2024-05-06 05:10:57, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_014077755 1191 bp mRNA linear PLN 29-DEC-2023 DEFINITION Ogataea parapolymorpha DL-1 Metacaspase-1 (HPODL_01251), partial mRNA. ACCESSION XM_014077755 VERSION XM_014077755.1 DBLINK BioProject: PRJNA264114 BioSample: SAMN02981294 KEYWORDS RefSeq. SOURCE Ogataea parapolymorpha DL-1 ORGANISM Ogataea parapolymorpha DL-1 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Pichiaceae; Ogataea. REFERENCE 1 (bases 1 to 1191) AUTHORS Ravin,N.V., Mardanov,A.V., Eldarov,M.A., Kadnikov,V.V., Beletsky,A.V., Zvereva,M.I., Smekalova,E.M., Dontsova,O.A. and Skryabin,K.G. TITLE Genome sequence of the methylotrophic yeast Hansenula polymorpha DL1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 1191) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (28-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1191) AUTHORS Mardanov,A.V., Kadnikov,V.V. and Beletsky,A.V. TITLE Direct Submission JOURNAL Submitted (25-OCT-2013) Lab of Molecular Cloning, Centre 'Bioengineering' RAS, Prosp. 60-let Oktyabrya, bld. 7-1, Moscow 117312, Russia COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_027861). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1191 /organism="Ogataea parapolymorpha DL-1" /mol_type="mRNA" /strain="DL-1" /type_material="holotype of Candida parapolymorpha" /db_xref="taxon:871575" /chromosome="VI" /country="Russia: Moscow" gene <1..>1191 /locus_tag="HPODL_01251" /db_xref="GeneID:25770714" CDS 1..1191 /locus_tag="HPODL_01251" /EC_number="3.4.22.-" /codon_start=1 /product="Metacaspase-1" /protein_id="XP_013933230.1" /db_xref="GeneID:25770714" /db_xref="GO:0004197" /db_xref="GO:0006508" /db_xref="GO:0006915" /translation="
MYPGNSHASYNNQYQRPSGPPPSRIYQPPAGAPPSRQYERPPAPPPNWGNQQTQTYQGTGGISYQQPTQQPPMPNFNMQNQQINGTNNVQQFQYSSCTGRKKALLIGINYIGTSNALRGCINDAHNMFNFLTQTQGYKAEDIVMLTDDQSELVKVPTKANMIRAMQWLVKDARPGDSLFFHYSGHGGQEEDQDGDEEDGYDDCIYPVDFQQAGSLIDDVMHDIMVKPLPAGCRLTCIFDSCHSGTALDLPFCYRAQDGGIKEYNVWKESSGDAVNLVTGYLTRNTGLMMSSVSNVFKRIKATSGSRAEQIKQAKMSPADVIMFSGCKDSQTSADANEAGSFTGALSYAFIKVLRENPIQSYLTLLQNIRAVLAQKYTQKPQLSSSHQIDPNVRFIM"
misc_feature <49..156 /locus_tag="HPODL_01251" /note="Proline-rich; Region: Pro-rich; pfam15240" /db_xref="CDD:434562" misc_feature 298..1176 /locus_tag="HPODL_01251" /note="Caspase domain; Region: Peptidase_C14; pfam00656" /db_xref="CDD:425803" ORIGIN
atgtacccaggaaactcacacgccagttacaacaaccagtaccagcgtccttcgggccctcctccctcgcggatttatcagcccccagcgggtgcaccgccttcccgccagtatgagcgcccgcctgctcctcctccaaactgggggaatcaacaaacgcagacgtatcaaggtaccggtggtatctcctaccagcagcccacccagcaacccccaatgccaaacttcaacatgcaaaatcaacaaataaatggcaccaacaacgtgcagcaattccaatactcatcttgtaccggccgcaaaaaagctttgttgatcggaatcaactatattggcacaagcaacgcattgagaggatgcatcaacgatgcgcacaacatgtttaatttcttgacccagactcagggatacaaggctgaggacatagtaatgctgacagacgatcaaagcgaacttgttaaggttccaactaaggccaacatgatccgtgctatgcaatggctcgtcaaagatgcacggccaggcgattctttatttttccattattcgggtcatggaggacaagaagaggaccaggatggagatgaggaagacggttatgacgattgtatttacccagtggactttcaacaagcgggatctttgattgacgacgtgatgcacgacatcatggtgaagccattgccagcaggttgcagactcacgtgtattttcgattcatgtcattcaggaactgctctcgacctacctttctgttacagagcccaagatggtggcatcaaggagtataatgtctggaaagaaagttcaggcgacgccgtgaatttggtgacaggctacctcactcgcaatactggcttgatgatgagctcggtaagcaacgttttcaagcgtatcaaagctacttctggatcacgcgctgagcagatcaagcaggctaaaatgtcacctgcagatgttattatgttctctggctgcaaagattcacaaacctctgccgatgccaatgaagctggctctttcacgggtgctttgagttacgcatttatcaaggttctgagggagaatcctatacagagttacctcacgctgttgcaaaacatcagggcagtacttgcacaaaaatacacccaaaaaccacagctctcttcatctcatcaaatcgatccaaatgttcgatttattatgtaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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