2024-05-05 23:15:07, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_014077232 2931 bp mRNA linear PLN 29-DEC-2023 DEFINITION Ogataea parapolymorpha DL-1 Pro-apoptotic serine protease NMA111 (HPODL_02904), partial mRNA. ACCESSION XM_014077232 VERSION XM_014077232.1 DBLINK BioProject: PRJNA264114 BioSample: SAMN02981294 KEYWORDS RefSeq. SOURCE Ogataea parapolymorpha DL-1 ORGANISM Ogataea parapolymorpha DL-1 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Pichiaceae; Ogataea. REFERENCE 1 (bases 1 to 2931) AUTHORS Ravin,N.V., Mardanov,A.V., Eldarov,M.A., Kadnikov,V.V., Beletsky,A.V., Zvereva,M.I., Smekalova,E.M., Dontsova,O.A. and Skryabin,K.G. TITLE Genome sequence of the methylotrophic yeast Hansenula polymorpha DL1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 2931) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (28-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2931) AUTHORS Mardanov,A.V., Kadnikov,V.V. and Beletsky,A.V. TITLE Direct Submission JOURNAL Submitted (25-OCT-2013) Lab of Molecular Cloning, Centre 'Bioengineering' RAS, Prosp. 60-let Oktyabrya, bld. 7-1, Moscow 117312, Russia COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_027860). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2931 /organism="Ogataea parapolymorpha DL-1" /mol_type="mRNA" /strain="DL-1" /type_material="holotype of Candida parapolymorpha" /db_xref="taxon:871575" /chromosome="VII" /country="Russia: Moscow" gene <1..>2931 /locus_tag="HPODL_02904" /db_xref="GeneID:25772351" CDS 1..2931 /locus_tag="HPODL_02904" /EC_number="3.4.21.-" /codon_start=1 /product="Pro-apoptotic serine protease NMA111" /protein_id="XP_013932707.1" /db_xref="GeneID:25772351" /db_xref="GO:0004252" /db_xref="GO:0005634" /db_xref="GO:0006508" /db_xref="GO:0006915" /translation="
MFETEDYHPKRHGDPPSNGHAKKQKCDDISMDDVDSVLGSELGDFVKQDHSRWQHIVEKVVKSVVSIHFAQVVNFDTESALCSEATGFVVDAKLGIILTNRHVVGPGPFIGYAVFDNHEECEVKPIYRDPVHDFGFLRYNPADIKYMDVGELQLRPDLAKIGAEIMVIGNDSGEKLSILSGFISRLDRNAPDYGINSYNDFNTEYLQAAASASGGSSGSPVVNIDGHAVALQAGGNTETSTDFFLPVYRVLRALKCIQNNEPITRGSIQVQWLLEPFDKCRRLGLRAETEKLMREKFPSLNGLLVSAVTLPEGPADGLIREGDCLISINGELISTFITVDEILDTHVGKEIEIVIQRGGKDLTVRCTVGDLHSITPRRYVTVCGATFNDLSYQLARIYAVAVKGVHVSNAAGSFVFGNNVPNGWLLDSIDDKDVSNLDEFIEVMKSIPDSAFVTVKCRHLTDLHVPIIKIIQIDRHWHSSFRLAERNDTTGLWDFTTLQEKPLPPPALSPKNAKFVGLPIEFEGCKQLDRSLVMLKSTMPVPLDSFSGQSRKSYAVVIDATNGYLLASRYCVPHDLLDVTMTVAESIIVPAKVVFLHPTKGYAILKYDPKLILAPLQTPQFGEKPLGRGDKVVFIGHNRAQRVVVDETKVSDIGIIHLPNNVTSPRFKASNFEALLIDSNLGQQCGSGVLCDPSGLVRAFWLAFDADEDKTYSMGLDATDVLWELENLKTQQVPELKFIDAEFGNIPIVNARISGVPQEWITKIEEKSADQPRLLSVPKVSISLDNKPSCGLRHGDIVLSANNRVITQFRDIDHVIRDLEENKNEIAFKIVRNKQIMDINVPLVLSSSFVTKHMVYWAGAVLQEPHHGVRQVIKQLPSKVYCTAMAPGSPSRLYTIGVTNFITHVNEKPTPTLDEFVKVVKEIKDNSYCKLRIVSFDNVPFAQTLKVNYHYFETMEMKNEEGWHEYGELDSSSLHA"
misc_feature <247..1131 /locus_tag="HPODL_02904" /note="Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]; Region: DegQ; COG0265" /db_xref="CDD:223343" misc_feature 1117..1347 /locus_tag="HPODL_02904" /note="PDZ-like domain; Region: PDZ_1; pfam12812" /db_xref="CDD:372324" misc_feature <2371..2523 /locus_tag="HPODL_02904" /note="PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated; Region: PDZ; cl00117" /db_xref="CDD:444702" misc_feature 2560..2778 /locus_tag="HPODL_02904" /note="PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated; Region: PDZ; cl00117" /db_xref="CDD:444702" ORIGIN
atgttcgagactgaggattatcaccctaagcgacatggagatcctccgtcaaatggccacgctaaaaaacaaaagtgtgatgatatatccatggatgatgtggattcagtgttgggatctgagctaggagactttgtaaagcaagatcattcgagatggcagcatatcgtggaaaaagttgtcaaatctgtggtttcgatccactttgctcaagtggtgaactttgatacggagagcgctctttgcagtgaggctacgggatttgttgttgacgcaaaactgggaataattctgactaatagacatgtcgttggaccagggcccttcatcggatatgctgtgtttgataaccatgaagaatgcgaggtcaaaccaatctacagggatcccgtgcacgactttggatttctcagatataacccagcagatataaaatacatggatgttggtgaattacagttaaggccagatcttgccaagatcggagcagaaataatggtcataggcaacgattcgggtgaaaaactttctatactctccggcttcatctcaagactcgacagaaatgccccagactatggaattaactcatacaacgacttcaacacagaatatttgcaagcagcagcttcggcttcgggagggtcctcgggttcccccgttgtcaatatagatggccatgcggtggctttacaagcaggaggtaatacagaaacctctacggacttttttctgcctgtgtatcgagttcttcgcgctctgaaatgcattcagaataacgagcctattacgagaggaagtattcaagttcaatggctattggaaccgttcgataaatgtcgccggctgggacttcgcgcagagacagaaaaactgatgagagaaaagtttccgagtctcaatggtcttctagtctctgctgtcacgttacctgaaggccctgctgatgggctgataagagaaggtgattgtttgatatcgatcaacggagagttgatatccacatttatcactgtggatgaaattctggacactcatgtcggtaaagagattgagatagtcattcagagaggaggcaaagatttaactgttcgctgtactgttggagatcttcactcaattacacctagacggtacgtcaccgtttgcggtgcaactttcaatgatctgagttaccaactcgctagaatttatgcagtggcagtgaaaggtgttcacgttagcaatgccgctggctcttttgtgtttggcaacaatgttcctaatggatggctcttagactcgatcgacgataaagatgtgtctaatctcgacgaattcatcgaggtcatgaaatcaatcccggactctgcttttgtgaccgtcaagtgccgccatcttacggaccttcatgtcccaattatcaaaatcatccaaatcgatcgccactggcactctagtttccgtttagcagaaagaaacgacacgactggtctttgggatttcacaactctgcaagagaaaccattaccaccaccggctctgtccccgaaaaatgccaagtttgtggggcttccgatcgaatttgaaggttgtaagcaactcgatcgttctttggtgatgttaaagagcaccatgcctgtcccgctggattcgttcagtggacaatctcgcaagtcgtacgcagttgtgattgatgctaccaacggatatcttcttgcttcgaggtactgtgtacctcatgacctcttggatgttactatgaccgttgcagaatcgatcatagtgccagctaaggttgtcttcttacacccaaccaagggatatgctattttgaaatacgatcccaaattaatattggctcctttgcaaactccccagttcggcgagaagcctttgggaagaggtgacaaagtggtgtttattggccacaacagagctcagagggtggttgttgacgaaacaaaagtcagtgacattggaatcatacatcttccgaataatgtcacctcccccagattcaaggcctccaatttcgaagccctactaattgactcaaacttaggccagcaatgtggttctggagttctttgtgaccccagtggactggtccgcgcgttttggcttgccttcgacgcggacgaggacaagacctattctatggggctggacgctacagatgtgctctgggaactcgaaaacctcaaaacccagcaggtcccggagctcaaattcattgatgctgaatttggtaacatccctatcgttaatgctagaatcagtggtgttccgcaggaatggatcacaaaaattgaagaaaagtctgcagatcaacccagactgctcagcgttcccaaggtaagcatttcactcgataacaagccctcttgtggtctcagacacggagatattgtgctgagtgcaaataatcgagtcatcacacaatttcgtgatattgaccatgttatcagagacctcgaagagaataaaaacgaaattgcgttcaaaatcgtcagaaacaagcaaatcatggacatcaatgttcctttggttttgagtagctcctttgtcactaagcacatggtctactgggccggtgctgtgttacaggagcctcatcatggtgtaagacaagtgatcaaacaactaccttccaaagtctattgtacggccatggcgccaggatctccctctagattatacaccattggcgtcacgaatttcatcacgcatgttaatgaaaagccaacaccaactttggacgagttcgttaaggtcgtgaaagaaatcaaagacaattcatattgcaagttaagaatcgtgtcttttgacaacgtcccatttgcacaaacgctcaaagtcaactaccactactttgagactatggagatgaaaaacgaggaggggtggcatgaatacggtgagctggactcctcctctttgcatgcatag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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