LOCUS       XM_013950384            6336 bp    mRNA    linear   VRT 09-SEP-2015
DEFINITION  PREDICTED: Apteryx australis mantelli protein argonaute-1-like
            (LOC106490864), mRNA.
ACCESSION   XM_013950384
VERSION     XM_013950384.1
DBLINK      BioProject: PRJNA294519
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Apteryx mantelli mantelli
  ORGANISM  Apteryx mantelli mantelli
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae;
            Apteryx; Apteryx mantelli.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_013998729.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Apteryx australis mantelli
                                           Annotation Release 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 6.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 13% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-36                NW_013998729.1     405009-405044
            37-171              NW_013998729.1     411090-411224
            172-291             NW_013998729.1     411639-411758
            292-324             NW_013998729.1     412095-412127
            325-325             "N"                1-1
            326-463             NW_013998729.1     412128-412265
            464-477             NW_013998729.1     412426-412439
            478-551             NW_013998729.1     413743-413816
            552-699             NW_013998729.1     428536-428683
            700-819             NW_013998729.1     429098-429217
            820-942             NW_013998729.1     429712-429834
            943-1076            NW_013998729.1     430354-430487
            1077-1261           NW_013998729.1     432077-432261
            1262-1421           NW_013998729.1     432426-432585
            1422-1689           NW_013998729.1     437531-437798
            1690-1824           NW_013998729.1     438241-438375
            1825-1926           NW_013998729.1     439333-439434
            1927-2126           NW_013998729.1     440598-440797
            2127-6336           NW_013998729.1     441298-445507
FEATURES             Location/Qualifiers
     source          1..6336
                     /organism="Apteryx mantelli mantelli"
                     /mol_type="mRNA"
                     /sub_species="mantelli"
                     /db_xref="taxon:202946"
                     /chromosome="Unknown"
     gene            1..6336
                     /gene="LOC106490864"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 17 ESTs, 28 Proteins, and 87%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:106490864"
     CDS             1..2235
                     /gene="LOC106490864"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: protein argonaute-1-like"
                     /protein_id="XP_013805838.1"
                     /db_xref="GeneID:106490864"
                     /translation="

MSKVGKEREGEMLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLESRAASWRLVLXVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRPGRSRVPSSLPAVTRGPGPPLLLQVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"

     misc_feature    <43..186
                     /gene="LOC106490864"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    352..714
                     /gene="LOC106490864"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(508..510,553..555,595..597,607..609,661..663,
                     682..684,688..690)
                     /gene="LOC106490864"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    847..2106
                     /gene="LOC106490864"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1258..1260,1270..1272,1306..1317,1324..1326,
                     1348..1350,1357..1359,1369..1371,1381..1383)
                     /gene="LOC106490864"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
ORIGIN      

atgagcaaagtggggaaggagcgagaaggggagatgctggagagcggtcagacggtggagtgtacagtggctcagtactttaagcagaaatacaacctgcagctgaaataccctcacctaccctgtctccaggttggccaggagcagaagcacacgtacctgcccttggaggtgtgtaacatcgtggcaggccagcggtgcatcaagaagctcacagacaatcagacgtcgaccatgataaaagcaacggccaggtccgccccagacaggcaggaggagatcagtcgcctggagagcagagccgcatcttggcgtcttgtcctgncagtgtcggccacggccttctacaaagcgcagcccgtcatcgagttcatgtgcgaggtgctggatatccggaacatagacgagcagccaaagccgctgacggactcgcagagggtgcgcttcaccaaggagatcaaaggtttgaaagtggaggttacccactgcgggcagatgaagaggaaataccgcgtgtgcaacgttaccaggcgaccggccagtcaccagacgtttcccctgcagctggagagcggtcagacggtggagtgtacagtggctcagtactttaagcagaaatacaacctgcagctgaaataccctcacctaccctgtctccaggttggccaggagcagaagcacacgtacctgcccttggaggtgtgtaacatcgtggcaggccagcggtgcatcaagaagctcacagacaatcagacgtcgaccatgataaaagcaacggccaggtccgccccagacaggcaggaggagatcagtcgcctgatgaagaatgccagctacaacctggatccatacattcaggagtttggcatcaaggtgaaagacgacatgacggaggtgacggggagggtcctgccagcacccatcctgcagtatggaggcaggaaccgggccattgcaactcccaaccaaggcgtgtgggacatgcgagggaagcagttctacaacggcattgagatcaaagtctgggcgattgcttgctttgccccgcagaagcagtgccgagaagaggtgctgaagaactttacggaccagctgcgcaagatctccaaggacgcagggatgccgatccaagggcagccctgtttctgtaaatatgcacaaggcgcggacagtgtggagcccatgtttcggcacctcaagaacacctattcagggcttcagctcatcattgtcatcctgccgggcaaaacgccggtgtacgccgaggtgaagcgcgttggagataccctcttgggaatggccacgcagtgcgtccaggtcaagaacgtggtgaaaacctccccgcagaccctttccaacctctgcctcaagatcaacgtcaagctcggcgggatcaacaacatccttgtgcctcaccagcggccgggaaggtcccgtgtcccctccagcctccccgctgtaacgcgtgggcctggcccgcctctgttgctgcaggtcgtgggcagcatggacgcccaccccagccggtactgcgccacggtgcgcgtgcagcgtcctcgccaggaaatcatcgaggacttgtcctacatggtgagggagctcctcatccagttctacaaatccacccgcttcaaacccaccaggatcatcttctaccgcgacggcgttcccgaggggcagctcccgcagatccttcactatgagctgctggcaatccgagacgcctgcatcaaactggagaaggattaccagcccggcatcacttacatcgtcgtccagaaaaggcatcacacccgcctcttctgcgcggacaagaacgagcggattgggaagagcgggaacatcccagcgggaacaacagtggatacaaatatcacccacccctttgagttcgacttctacctgtgcagtcatgcaggcattcagggtacaagccggccgtcccattactacgtcctctgggatgacaaccggttcaccgcggatgagctgcagatcctcacctaccagctgtgccatacctacgtgcgctgcacccgctcggtctccatcccggccccagcctactacgcccggctggtggcattcagagcccgctaccacctcgtggacaaggagcacgacagcggcgagggcagccatatatctggacagagcaacggcagagacccccaggccttggcgaaggctgtgcaggttcatcaggacactttacgtaccatgtactttgcttgaaagcctaacttttgttacctcactcaagaaagctttcagatttgtaggagccatacaaaaaaggaagcattgggacaccttgttttttttccaatgagaaatcactgcagggcaggcagcgtcgatttgaggcaggagaccagcaccacgggacagaaagatccaacacctttgtaggattggaagagactgattttttttttttaatttttctggcttgcaaaattttgacctgaccaaacacatgaaggcattcaaggaagggataaaacttccaggaggcagaagcaggttttcatttttaagatgcaatactatagactcctgactgtgaaatggcggatttggtcctccgttgcccaccaggcgctggtaggtattttttgtggggttggggggaggggatttttagagccttaaaacagaagactagatttataaaactaatattttagaatatgagatgctttaatgggttaaggggaaaaacaactagtttataggagaattctaacactaacagtccccccctcaaataactccccccatataatgtaaggcaccctagcacttagctcagaactgaaaactgtcttccttgtgttaaaagctagttagctgctgccattcgaagcaacagtcacagacttttccatgggtgagtgccttactatgatgctgcaaaatttcaatgtttttaatcttgtaaggaaaatagtaatcttgtcttgatggtggtccatatttccatcggaaggagttaatttttatggtcctaagttgcagtttgtgttagatcacaacctcatggtggttaaactccattgaaagatgtgcactttcatataggacaagtttaatggctgctgacccatttttgtttccaatgtactacttgttatttaaaactgtttctgacaaatgggggcatcttcatcccatgaggacagaaattgctatcgattattttttttttctgactttctatgatggaaaccgggatttttttactaaacattatttttatatgatactgagtctgttgccaaaatacacaagtcattaacattctcagagtttacatccctgcacttcctgaggctgtgtgatcacgccagagctctaacgttccctgtccgatgcgtgttacaaaccgcagtccgtgcggctctggggtgctcctcaatgctctcgtctgccatgcgtcacgcgcgttcctcgcgcatccgtgtgggccgaccgctttctgaaataccacgtaccccaacttcagcatgtccaaactgtcgtagattctgctgctaggttttgctgctcttttgtgtcatggtatcactgatttcatgcacaggtttttattctgaaagcacaccagattgttccttagtcagatttataaaatacttgttattgtcgtgggggaaacggctactggtttgtgttcgtaatggggagaaagcctttttttcccaacagtaaaacagtgactgcttttcagactcattttgccgtacagaatgaccattctgcacagcagggcagtagtagcaactccttaccaatagcatgtgggcagattatctgacttttttttttttttaataagaaaacgtgcacaaagcttccttcaagagaaggagttatgtgtacactgctactgagctcttaaggggaagagctctgttaccaatttactgccaaaagcgaacacattttcaaagcccgtcacgagcactgccctttgtcagtacccattgatagaagcacacctttttattttgtacttactgatgtttaaacttgccttgctagtagttcataaaaacagcattagtcatgttgacccattgctctgtcctaataccaagaattcactgtacttgttttcttttcgggcaacatgtttgtgaaaaaatgaagacatcaatatgctatgcaaactaagtgctgagcccactgatgtcacgttttgtgaagatcctacatttagcacagttgtatttttctcaagactgcagtatttggttcatactctcctttgcaccttgtgtcaaactccactgctgtatatctacaaggtgatggggaggaggccaagaaccgttcatggtcagtagggtagcgagctcttagggaggcttttagagagtagggaatgcataaacactaagtgtcaacatgagaagcctacattcctatacacaagtgcctgcatagtgacacaaattcagcacctctcccatttcatcctcagaactctggcttgtgttcattgaaagcaaaatgatctcagaggggctgtgcccaccccaccgtgtattaggaggcccctcattaagagtaaaactgggggttacggtcaaagttctctgcaaatcagtttgttcaccagcattatgactgaaagcaccttgctgctgttccgcggctaagggcaaaggtattttggtttctactttttattttaatgttttagttgggtctagaattctgaaatgtcttttagtagctgtggcatagcacatgccatttttaaccatttgaaaagagatagtgtgggcatttacagaaacagcttgttgctctgtaacaatttttttttttaaccttgagacttgaaatgtaaaatggacctttaagatttgcactcatttgtaaggtggctgttcatagaaaactatgaatgaagacttgctgatgtagcacctacttttaacagcaattttaactacacaaaagcttcacggcttctgaaactctcagctgttgacttgcagatcgtgttctgcccttatttcaccctctgcgttgggttttcatggttttaaataaataaataaaaaagccaaactcagctgctgtgccctttaaaaccgtatttccattttgaagaagtttagaaggggtttgagttacccgcatgttttgtataatggactatgcactgtaccttccacacggctccagcattcaatatttctacccttttcttgtccaagatgcaaatgagtaattgcatgttgaggtgctgtgcattttgctacccatagcagataggtgttaacccgtatacatatcacgatttgtagttaccacaaacccacacagtcatcctgaacggctcccgagtctctaccttctaaatgcgcacgtgtcccttgtgcaactggaaacattgccaagtgcatgcagatttgtgggaagaggaataactttcatttatctgtcaattgttgaatgctgtttgtttcccttatctcatatctgaacataacggggtgcatgagggcagaacagccctcaggaaagcttagcaggggcagtcggggggttctggtatttgcaagcgtatgacctgatgtctagtgttgaaaagcccaagcattcaacgttgcctcacggaaggttttcttcttggaaaattagtgtgaaataaaagaatgtgattctttcgggaagggaagccagacagcaggacagcaataaacaagtgaaattcatatcttgcctgagtgatttgcacttcaatagttgtgaaagaaaactgatgcggattccagtgcttttgtgttcaatttctagcccctttcgtacctcctttatacaagcaagcgttgaactgtacatagagtgtttacaagacactctgtttgggttgttatttttcttgtgttttttttgctttagcttgaactctgtatggtccatttgttgaatagacgtgaacagttgatgtacagtacttactaaacaagcagcagcacaaaacttattttattaagaaaatatggcttatattttaaaggttgaatatcaatttttttttgtatgcgtggaattaagactggtaaagagtaacaaaatccttggattaggccaaaagaaaatactgtaagatcataaccacctctttattaaagaaaatggtatgattaaagagctccagaacattgtatttatatttgatttgattgcctttgtggatttttttttttttctttgccttggtcctgagttttgcttgcaactttgactttgcagtccaaagtgtctgttaccctgtaactgttggcagaagacctaataaaagcaatgtgaata

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