2024-04-19 10:49:38, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_013552724 2406 bp mRNA linear INV 28-FEB-2018 DEFINITION PREDICTED: Lingula anatina serine/threonine-protein kinase mos (LOC106172125), mRNA. ACCESSION XM_013552724 VERSION XM_013552724.2 DBLINK BioProject: PRJNA293030 KEYWORDS RefSeq. SOURCE Lingula anatina ORGANISM Lingula anatina Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Brachiopoda; Linguliformea; Lingulata; Lingulida; Linguloidea; Lingulidae; Lingula. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_019776079.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Feb 28, 2018 this sequence version replaced XM_013552724.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Lingula anatina Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2406 /organism="Lingula anatina" /mol_type="mRNA" /isolate="Amm_Jpn" /isolation_source="intertidal zone" /db_xref="taxon:7574" /chromosome="Unknown" /sex="male" /tissue_type="Gonads" /dev_stage="adult" /country="Japan: Amami, Kasari Bay" /lat_lon="28.4406 N 129.6676 E" /collection_date="2012" /collected_by="Nori Satoh, Kazuyoshi Endo" /identified_by="Kazuyoshi Endo" gene 1..2406 /gene="LOC106172125" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns" /db_xref="GeneID:106172125" CDS 380..1288 /gene="LOC106172125" /codon_start=1 /product="serine/threonine-protein kinase mos" /protein_id="XP_013408178.1" /db_xref="GeneID:106172125" /translation="
MPGCRVVNSPLARASPRRVLGAKIQLKDIKLVSLVGSGGFGSVFKGTYKGQNVAVKKLHTYTKNPKAQKESFKAELRVLRLSHPNVVKTFAYGYNEYESGEVSDIGFLLMEYAGDRNLQHIIDCERELLDPLRRLKYALDIVSALDFAHGIGIVHLDIKPANIIINGDDTCKVGDFGCCQHLVEGTGQVSPTQRSYLTGTFAYRAPELLKGEAPTAKADVYSLGITLWQMLSRESPYYKQNQHVVIFGVVAYNLRPKLPTKDDCPFDLCYQDLFVQCWDADRAIRPSASEIKEVLEIWREFA"
misc_feature 482..1267 /gene="LOC106172125" /note="Protein Kinases, catalytic domain; Region: PKc_like; cl21453" /db_xref="CDD:451246" misc_feature order(482..493,500..502,506..508,539..541,545..547, 638..640,707..718,848..850,860..865,869..871,899..904) /gene="LOC106172125" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270870" ORIGIN
cacatgtcgactcgctccgagcttgcccaatgcgggacctatgcactgcatattataacttatgaccagcgtaacggcgtagatcaacgcagcgtattttgtgcatgcccaaaaatatcgggcgtattggatcgtactgtgcgaatgttagaatgcgatttagatgcacgtggggtgcgtattgggcgaaaagaagtatcaatgcgcaactggtaaagaattatgatacgccgaatcaaggtgaggtaaggtgaacagttctcaaatgcgctgggctgaagacccgtcctctgctgggcccaaatattcggcctgttataagttggaactgagagcgaacgtacgtggttgaattgcgcggcagataaaaattatcaaaatgccgggatgtcgagtcgtcaattctcccttggcaagagcaagtcccaggagagttctcggcgctaaaatacagttgaaagatataaaattggtgtcacttgtaggcagcggtgggtttggttccgtttttaagggaacttacaaaggacaaaacgtagctgtcaagaagttgcacacgtataccaagaacccaaaagcacagaaggaaagtttcaaagcagaactccgggtgcttcgcctgagccatccaaatgtcgtgaaaacttttgcttacggatacaatgaatatgaatcgggtgaggtctcggacatcgggttcttactcatggagtatgctggagacaggaacctgcagcacataatagactgtgaacgtgaacttttggatcctctcaggcgtctcaaatatgccttagacattgtatcagcactagactttgcgcatggaatcggaattgttcatttggacataaagccagccaatatcatcataaatggcgacgacacatgtaaggtgggtgactttggttgctgccagcatcttgtggagggtacgggtcaggtcagtccgacacagcgttcatacctgacgggaacatttgcctacagagcaccagagttacttaaaggggaagccccgactgccaaagcagatgtctattctcttgggatcaccctttggcagatgctgtctagagaatcgccatactataagcagaatcagcatgttgtaatatttggcgtcgtggcatacaacctcaggccaaaactaccaaccaaggatgactgcccgtttgacttgtgttaccaagatctgtttgtacaatgttgggacgcggatagagcgattaggccttcggcctcagaaattaaggaagtactggagatttggcgggaatttgcataatgatattaaaaacgaaaaagacacgctttcagatcgctaagaggcgagacaatcgagtgtatatgcttataaattattacataagcattatgccttttttaatttttgatttgatgtggccatacagatatataaaagaacttgtgtaattgcatttggtgttttgtgaattgtatatgtgaaatgtgttaatatttttcttcctatatttcctcaaaatgatatcgactagaacaatgaatgtatacatttatatgtatttatttgtaaattttcataatttgtatagatttaatttgaactgtatatgtgttaatattctcttgtaaatatgtatacacgattttgtaaaagtggcaaatatctagcatgcagacttcaatgagtttgaagtacctgtacatatgttgatatattttctaagttcattgggtttcatttgtttcaaatgtatagtgtaagtaagtcctatggagcgctgtaatataaacatttcaatggaatcagattcgtcaccatcaaggaaaatagtcattgacgatttgataccttcggcaagactgcttaacttcttgcggtgtctgcatagcatttagactttctaatatgtatatagttcatttcgtggaagtataggaatgttttcatcaacatgtaggacctatcatatttggtgtttatatctgtatataaaaaattactgtacattcaaagacaaattgtacattatattgttttgcacggacagtttcaatatgtacataagggcattgtagatagatatttattgtttgtagatagtatgtataaaagagttaagccctcacagaaaaaaaattaaatgatatataagagacaggtaaattccgttttgcttattaaagaaatgttttaaatattttttatttgctatacatttaaaattagttacgtcatcaaatgttaattttttcttcgtgtcaagtctaacattgccaaaattgttggttgtataggcccaggggtgttctgtgttttgaaagtttcttagttgccacttttcgcgtcttttgacttactgcaataaccatcatgaaaatcgttcataataaaacgtagatatatttgataacattttt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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