2024-04-20 18:22:00, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_013087288 4660 bp mRNA linear INV 31-AUG-2020 DEFINITION PREDICTED: Aplysia californica protein argonaute-1 (LOC101846762), mRNA. ACCESSION XM_013087288 VERSION XM_013087288.2 DBLINK BioProject: PRJNA209509 KEYWORDS RefSeq. SOURCE Aplysia californica (California sea hare) ORGANISM Aplysia californica Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Heterobranchia; Euthyneura; Tectipleura; Aplysiida; Aplysioidea; Aplysiidae; Aplysia. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004797840.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Aug 31, 2020 this sequence version replaced XM_013087288.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Aplysia californica Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4660 /organism="Aplysia californica" /mol_type="mRNA" /isolate="F4 #8" /db_xref="taxon:6500" /chromosome="Unknown" /sex="hermaphrodite" gene 1..4660 /gene="LOC101846762" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:101846762" CDS 56..2506 /gene="LOC101846762" /codon_start=1 /product="protein argonaute-1" /protein_id="XP_012942742.1" /db_xref="GeneID:101846762" /translation="
MFPMQPGQGGYGQPPTGQGLPPAFLGSHLGNGQPAGLHFPFSGMQTQDVPPLPPTMPTPIGPMTQTDAPPPLSFAVGQPPLSESFTPPSPPLADFVSPPRPNQGTEGRTISLRANHFQVRVPKGIIHHYDISITPDKCPRRVNREIIDTMVTAYQQKIFEGQKPVFDGRKNMYSRETLPVGSEKIELEVTLPGEGRDRVFKVAIRYVGQVSLFALEEALEGRTRQIPMEAVQALDVVMRHLPSKIYTPVGRSFFSPPEGYNHPLGGGREVWFGFHQSVRPSHWKMMLNIDVSATAFYKEQPVIEFMCEVLELPDINDQKRPLADSQRVKFTKEIRGLKVEITHCGTMKRKYRVCNVTRRPAQTQSFPLQLNTGQTIECTVARYFMEKHKMKLQHPHLPCLQVGQEQKHTYLPLEVCNVVGGQRCIKKLTDLQTSTMIKATARSAPDREKEINNLIRKANFNADPYLQTFGISINTQMMDVQGRVLTAPKLQYGGRTKAQAIPNQGVWDMRGKQFYQGIEIVVWAVACFAPQRTVREDALRPRVFREPIIFLGADVTHPPAGDTLKPSIAAVVGSMDAHPSRYSATVRIQEHRQEIIRDLATMVKDLLIQFYRSTSFKPTRIILYRDGVSEGQFQSVLGHELRAIREACMKLEVDYQPGITFIVVQKRHHTRLFCADRRDHTGRSGNIPAGTTVDQGITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFNADELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSRHSDNSEDRNPLYLARAVSVHQDTRRVMYYA"
misc_feature 248..2356 /gene="LOC101846762" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1445..2377 /gene="LOC101846762" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1715..1717,1721..1723,1931..1933,2345..2347) /gene="LOC101846762" /note="active site" /db_xref="CDD:240015" ORIGIN
tgtaaattgtgatcttaggggtagaagtggataaacaatacacaagcttgcctctatgtttccaatgcagccagggcaaggtggctatggccaacctccaactggccaaggcttaccccctgctttcttaggatcccatttaggaaatggccaacccgctggtcttcatttccccttttctgggatgcaaactcaggatgtcccaccgctcccaccgacaatgcccacacccattgggccgatgacccagacagacgcaccccctcccctatcctttgccgtgggccagccccccctctctgaatccttcaccccaccgtccccaccgctggcagattttgtctctccaccgcgacccaaccagggcacagagggccgcaccatctcactgcgagccaaccacttccaggtgcgcgtgcctaagggtattatccaccattatgacatcagcatcacgccagacaaatgccctcggcgggtgaacagagaaatcatcgacacaatggtaactgcctatcaacaaaagatctttgaaggtcaaaagcctgtgtttgatgggaggaaaaacatgtacagtagggaaacgcttccagtgggatccgagaagattgagttagaagtgaccttgcccggtgaaggtcgggaccgagtgttcaaggtggcgatccgctacgtgggtcaggtcagcctgttcgctctggaggaagccttggaaggtcgcacccgccagatccccatggaggctgtccaggctctggatgtggtcatgaggcacctgcccagcaaaatctatactcctgtcggccgctccttcttctccccgcctgagggctacaaccatccgctgggtggggggcgagaggtttggttcggtttccaccagtccgtccgtccgtcccactggaaaatgatgctcaacattgatgtgtctgccactgccttctacaaagaacaaccggtgattgagttcatgtgcgaggtgctggaattgccagatatcaacgaccagaagcgccctctggcggattcccaacgagtcaagttcacaaaagaaatcagaggtctcaaagtggaaatcacgcactgtggaacaatgaaacgcaagtacagagtgtgcaacgtcacgcggcggccggcccagacacaatcattccccttacagctgaacaccgggcagaccattgagtgcacagtggctcgctacttcatggagaagcacaagatgaaattacaacatccacatttgccgtgccttcaggttggacaagaacaaaaacacacttatctgcccttggaggtgtgcaatgttgtgggtggacagcgctgtatcaaaaagctaacagacttacagacatcgaccatgatcaaggccacagcgaggtcagctccagacagagagaaagaaattaacaacttgatccgtaaggccaacttcaatgcagacccctatctccaaacctttggcatcagcatcaacacgcaaatgatggacgttcagggtcgtgtgttgacggctcccaagttgcaatatggtggacggaccaaagcccaggccatccccaaccagggcgtgtgggacatgaggggcaagcagttctaccagggcatcgagatcgttgtgtgggccgtggcctgcttcgcacctcagaggactgtcagggaggacgctctcaggcctcgtgtgttcagagagccaatcatcttccttggtgctgacgtgacccacccccccgctggcgacaccctcaagccttcaattgctgccgttgtcggcagcatggacgctcaccccagtcgctactcggccacagttcgaatccaggagcaccggcaggagatcatccgcgacctggccacgatggtgaaagacctgcttatccagttctaccgctccaccagcttcaagcccacccggatcatcctctaccgcgacggcgtcagtgagggacagttccaatccgtgctggggcatgaactgcgtgccatccgcgaagcctgcatgaagctggaggtggactaccagccgggcatcaccttcatcgtggtgcagaaacgccaccacacacggctgttctgcgccgaccgtcgggaccacaccggccgcagcggcaacattccagcgggcaccacggtggaccagggaatcacgcaccccaccgagtttgacttttacctctgctcacacgcaggcatacagggtaccagccgaccgtcacactaccacgtcctgtgggacgacaatcgcttcaacgcggatgagctccagatcctgacgtaccagctgtgccacacgtacgtgcgctgcacgcgctccgtctccatccccgccccggcctactacgcacacctggtagcctttcgggcgagatatcatctggtggagaaagaacatgacagcggcgagggctctcgtcactcggacaacagcgaagaccgcaaccccttgtacctagccagagccgtcagtgtgcaccaagatacacgtcgagtcatgtactatgcctgattggctggcgcgtgtactctgctctgcctataggaagtgatcaacacaatgccctgaaagtaacacaagagatgttcatgagggtgggaaagacatacttctgcatcccttctctgacaagactgaccttggctcctgctggaagggcacagagctggaagtgctgtgcgtgtatgcagattgatgcatatgtatcatgtgcaactgagagtgacgtgcatatcttctgcttagtgtaagactgccccactcgccattttgaaaagcagttgatatatgtgagaatgatatatatatatatatatgtgtatatcgtgtgcaactgaaagtgatatgcctatgtgagggtaatgtatacgtatcatgtttaactgagagtgacatacatatcgactgctcagtgtaagactgccgccccccatgccattttgaaaaatagtcaatatatgcagagtgatgtatatatctctgtcatgtgcaacagaaagtgttgcacatatttgggagtgatgtatgtgcatcatgtgcaattaaaagtgatgtatatatatatatgtatactgtgtgcaactaaaagtgatgtgcctatttgggagcggtgtttgtgtatatcgtgtgcaattgaaagtgatgtgcattttaaggagtaccgtatgtgcatcatgagcaactgagtgtgatataatgcatatgtgggagcaatgtatgtgtatcgttggcaacttttctccactaatgcttgatgggtcttgggggacttcttggactgaactggcccaggagacaaagctgcgagggacactctcggatctccacaacatcacttacatctatcaaaaccccaaacaatcagataaaggagaagagacattgtaaatttcagttacatatcccctactcgaaagaagggtgcttgcgctttgcgattaaaaaaatttctctgtcagatctattaacattccgaaactttctcagcttcctgtttgacatttttctttcgtgtgtctgatctgtgcattggttttttggctcgacgtaactctgtaactgggatatatatatatacacacttcccattcctggtgttaatttgctggcttgaagtcattgaacatgtctttctttcagtgccactcttttttttttcttttttttttttgagcctgtgaaagatgcaagcatgttccctgctagagaagtgtggatcagtgcgcttactagcctgaacggtattgcccactagtaggcaagttacaagttgtggtaatgctaggggatcaccagagcagtgagaggagtgggcggtaggaaaatgctagcctcttaaaggtagcacaagtaggcacctgactttgctgtcgttgttgattgttgttgttgttgttgttgttaatccaatagccttagagtatgtgcccttcggcacaaccaccgttgtgttggaaaaaggtggaggtcttaaacatttgctctttgctgcagtatagggtgcagctattattattttttctaattcacaactgctggcgaataatgaatggctttccaaaagtatggactgaagaaaagatttgtgagtcttggctgctcagttcattcaaggttagagcgtcgtacatcgacaaaagaaaaaactttctggaagatttttgcagctatatcaacaacagtaaatttatgaaagtcatcaggcaaaagtaggagttccacggtcctttgttgttctggtttttccttgtgatattgctttggtccaatgatgtactggggtcttaataaactattattgtgcgtgcaagtaggatgggtcaaagctacccttgattttttaaaggatttgcatttattgattttctttattatagttgaggtggttaaaggaacccactgggagataagatatgataagaggtctacttctttcctgttcatctttctttatgcatgttttcttgctttttttcccctcaacactacatgtccatcctcatatcaatttcctttttgaactacagatacggttactggcgtctgtgctgcagcggttaaccctattcgtacatcgtcttttacttctatcatatccgtacgatgtggggaactcagtgccaccactttccaaagaggaaatttactcattaatccgatccgtac
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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