2024-04-29 07:02:06, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_013039291 1203 bp mRNA linear PLN 29-JUN-2015 DEFINITION Blastocystis hominis mRNA. ACCESSION XM_013039291 VERSION XM_013039291.1 DBLINK BioProject: PRJNA263384 KEYWORDS RefSeq. SOURCE Blastocystis hominis ORGANISM Blastocystis hominis Eukaryota; Sar; Stramenopiles; Bigyra; Opalozoa; Opalinata; Blastocystidae; Blastocystis. REFERENCE 1 AUTHORS Wincker,P. TITLE Sequencing and annotation of the Blastocystis hominis genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1203) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (26-JUN-2015) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1203) AUTHORS Wincker,P. TITLE Direct Submission JOURNAL Submitted (12-FEB-2010) Wincker P., Genoscope - CEA, Sequencing, 2 rue Gaston Cremieux, F-91057, FRANCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_013171816). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1203 /organism="Blastocystis hominis" /mol_type="mRNA" /isolate="Singapore isolate B (sub-type 7)" /db_xref="taxon:12968" /note="scaffold_1" gene <1..>1203 /locus_tag="GSBLH_T00006172001" /db_xref="GeneID:24922297" CDS 1..1203 /locus_tag="GSBLH_T00006172001" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_012894745.1" /db_xref="GeneID:24922297" /db_xref="GOA:D8LYP2" /db_xref="InterPro:IPR000212" /db_xref="UniProtKB/TrEMBL:D8LYP2" /translation="
MSDFISILDLKVNAAKSKSKSNVIQIPNSWNRENSLKKPEVFQWKDIEKNGYGVRLNEFYSAVEEQEEIVNQIKKILKGPAMAKTRSENSVEELVKENRFENHPMNHVIGVFFKTQKEVEQFCTLLKQEGLPYRGNEETSNFSEGINILRLLYDPNDSRSYDMMTVLQLPSLEISTTTLQTFIQNCKRNHQSLYETVKEALKTEANLPQNEWRNLSKLMSTIQSLHNQLLNYPGSYLLYQFYNRIHELPQIMNDSERQSSLIGLLNELMYLEDGHSPLLKSNSSSPFFKLHDYIDFLSFIPLFPSTSILDRLRSLQGHPLTKLLLTQCDSNPEEKDETSPIDSNVILVGTYADRYPNYFTVAHFVYSFISVSLFASVECFQDFTSSRQFFLFVPGMRHCP"
misc_feature 91..>564 /locus_tag="GSBLH_T00006172001" /note="UvrD-like helicase C-terminal domain; Region: UvrD_C; pfam13361" /db_xref="CDD:433145" ORIGIN
atgagcgatttcatttcgattttggacttgaaagtgaatgctgcgaaatcaaaatcaaaatcgaatgtgattcagatcccgaactcatggaatcgagagaattctctcaagaaaccggaagtgtttcagtggaaagatatcgaaaagaacggctatggagtgcgattgaatgagttctattctgcagtggaggaacaagaagagattgtgaatcagatcaaaaagatcttgaagggtcctgcgatggcaaaaacaagatccgagaattcagtcgaggaattggtgaaagaaaatcggtttgaaaaccatccaatgaatcacgtcattggagtattcttcaagacacagaaagaagtcgagcagttctgcacgcttctgaaacaagaagggcttccctatcgtggaaacgaggaaactagcaacttttcggagggaatcaacattctccgtcttctttatgatccaaacgactctagaagttatgatatgatgacagtgttacaacttccttcgcttgaaatctccacaacgaccctccaaacttttattcagaactgtaaacgaaatcatcaaagtctttatgaaacggtgaaggaggcgttgaaaactgaagcgaatcttccacagaatgaatggagaaacttgtcgaaattaatgtcgacgatccaatcattgcataatcaattactgaattatcctgggtcttatcttctttaccagttttataatcgaattcatgaattaccacaaatcatgaacgattctgaacgccagtcttcattgattggtctgttgaatgaattgatgtatttggaagacggccattcgcctcttttgaaatcgaactcgtcttctccattctttaaacttcacgactacattgatttcctttcattcattcctctctttccttccacttccatcttggatcgattgcgaagccttcaaggccatcctttaacgaaacttcttcttacgcaatgtgactccaatccagaagaaaaggatgaaaccagcccaatcgattccaacgttattcttgtcggaacatacgcagatcgatatcccaattacttcacagtagctcattttgtgtattcattcatttcagtctctctttttgcctcagttgaatgcttccaggatttcacttcatcgcgtcagttcttcctgtttgttcccggaatgcgccattgtccctga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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