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2020-03-31 05:27:03, GGRNA.v2 : RefSeq release 99 (Mar, 2020)

LOCUS       XM_012964738            3359 bp    mRNA    linear   VRT 18-DEC-2019
DEFINITION  PREDICTED: Xenopus tropicalis claudin 12 (cldn12), transcript
            variant X1, mRNA.
ACCESSION   XM_012964738
VERSION     XM_012964738.3
DBLINK      BioProject: PRJNA205740
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_030682.2) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 18, 2019 this sequence version replaced XM_012964738.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Xenopus tropicalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3359
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /strain="Nigerian"
                     /db_xref="taxon:8364"
                     /chromosome="6"
                     /sex="female"
                     /tissue_type="liver and blood"
                     /dev_stage="adult"
                     /note="F17 inbred"
     gene            1..3359
                     /gene="cldn12"
                     /gene_synonym="claudin-12"
                     /note="claudin 12; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 90 ESTs, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 77 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:549605"
                     /db_xref="Xenbase:XB-GENE-974236"
     CDS             412..1188
                     /gene="cldn12"
                     /gene_synonym="claudin-12"
                     /codon_start=1
                     /product="claudin-12 isoform X1"
                     /protein_id="XP_012820192.1"
                     /db_xref="GeneID:549605"
                     /db_xref="Xenbase:XB-GENE-974236"
                     /translation="
MREFLPELSRETIMGCQEVHAVTLFAFVCGTASISGLFAATLLPQWRQMKLYTYNRNEKNLTVSIGLWVKCTRLEWSRECMMYDMEWYASVDQLDIRVLQFALPFSILTAASALILCLTGICNTTFTSGVPNLKLVKCLVNSSGCHLVAGLLYILAGIMSIMPSIWSVFYNSVLNTKYGPYFTYDIAVFVAIGSSGGMFFTAVLLFLWYCACKSLPSPFWQPLYSHVPSMHSYVPPSYQSRSRMSAIEIDIPVVTHTA"
ORIGIN      
gccttttcttgcatttctattccttgcctccctgttccctcggcatatcaatatgcctatcgattatcacgcagaatatgcgctgctgccggcgcagacccgtactgcggccctcggttagcgcacctcccccgtctgcctgctagagattaggcacctccagtacgccgctcagtttattagggatgtgctgctgccatagatcgacagctacaagtcccagcatgcctctgctagattaactggaggggccagccagtgcatactgggagttgtgggggctgccaatgatgcctagcaattctatgttatatatatgcaggggtgatttttggctagagcagaaaaggcagtggctcctatccaactgcaacacaggggcctttgccggtaaaacacagataaaagtacatgagagagtttttgccagaactttcaagagagaccataatgggctgtcaggaagtccacgcagtgaccttattcgccttcgtatgcgggacagcctccatctcggggctctttgctgccactctgctgcctcagtggaggcaaatgaaactttacacgtacaaccggaatgagaaaaacctgactgttagcattgggctgtgggtgaaatgcacacgcttggagtggagcagggagtgcatgatgtatgacatggagtggtacgcaagcgtggatcagctggacatccgtgttctgcaattcgctctgccctttagcatcctgaccgctgcctcggcactcatattgtgtctgactggaatctgtaacactacctttacctccggtgtgccaaacctaaagcttgtcaaatgcctcgttaacagttctgggtgccatcttgtggcagggctgttatatatactagcaggtatcatgagcattatgccatccatctggtctgtgttttacaacagcgttctaaacaccaagtacgggccctactttacttacgacattgcagtttttgtggctattggcagttctgggggcatgttctttactgctgtcctgctgtttctgtggtattgtgcctgcaaatctctgccctctccattctggcagcccttgtattcccacgtccctagtatgcacagctacgtgcccccgtcctaccagtctcgctcccgcatgtcagccattgagatagacattcccgttgttacacacactgcctaacgttagcatggtatgcctgtgcttatggactttcatggtacacctcacttttgtgtatatatatattattttttttgtacatattaggattccttcaatttgtttccacttctctttttttcttgtgtaacctgctaaggtagtacttacagtatcccaacagtgctatgatttgttgatccaacttggacacagatctaagaacaataacctccctgtaaataatgccttaggattacttaacctaaaatactagctgccctgatataaaaataaatagaaatataaaaaaaaaaaaaaatttagtgggtaatataacaggagcagtggttgctccaggtctagtaaaccactagaccagatgtttgctttctctgattggctgcatttctagaactggtgcagacttatttatacattaccccaatactgtttatcatgggagggtagaacacacaatactttttagcctttacaagcagactgtattcatatgggatttctcaaaactgatccaagggcttactctgagcgataattataaaatatggttataaatgataatattgccaaccattactgtgtgtgtgggcagctatagccacaggacgtttggtaggaatgggaaaatggtctcaagaatgactgtgccatctactcttgcatgctgggattatataatccgggtttagggcctgttggattggcctctgctttttaatgctaagtgactttagtgccaattcccgattggcaaaggtacaataacactgaattattttttcttttgatgaactgaagcaaaatagtaattgacctgtatctgtaacactataatacagcaacacgttacttttagtagtgtaagtttgtaataagagtcagtatgtatatttattgttaattggaaagcttaatttttatgcatttgtatttaaagttgtttcagctacaaatatgaaactagcacccctcgttctccctaggttgtagcatccagaactagccattgattgagagaggatgctgggaattatagtttatccgtgctggaagactaccatctattctttatctagtagggattattgtatattttatgctgtgacaagtgtttacagaagtagactaaatcactggtgttctgtttagtactggtttctcaagtgcattcctataaaatgtctcttttctattttgtttgttctgttccagtacagtatattgagcaaaactgctgctaaatgaattgtgtaatgcactgtagataatcttacgtatctgcctttaaattgtgtgcttgtatcatgcattaaaggcaaactcatttttgggggaaaaaagctgattatttgtgcctgtgagcctattttatagagttctagttgggttgttcccccaaatatgcattattgtaacctaattctgtataggctgtaagatttttatactacagaataataataatgtggtgtgttattactttatataaatgtgaaacataaaacagcattgcagtaaagaggctttgtttaccttcccctttctagaatagaaataggattttgtgttctctttacaatacacattttgcagtgacttattatttttaatctacagtacattccctttctgtatactttttatttacatatcatgctgccatgtgtcatgttataaggataatgtcccacagggttattagtcgcctgcggttaaatctgggcaacatatctacccagaatgctttcttactggctataaagtgaatcgctgggggcaaaacataagcagcgcctcattttccaaagttgtctgaagttttctcaggtgacttcagaaaacaaagtgcagcaaattttgagcagatatcggtcggtccccatacacacacagataagctcggacacaagcaagacatggggctagggtacatggtaaaacaggatatttccttctctagactctgcagtaaaactgcatgatgtatatatctctctgctgcacatggctgggaattgtgctgcttttggtatcgatgtatttcatgtgctcagtatatatgtgcaccttttatgactacacgagtccatttctgtgccactaatgggctagtatgtaattattactgtgctattggcacgcgctcaataaaaacttttttaatacat
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]