ver.2
Home
|
Help
|
Advanced search
Previous release (v1)
2025-12-23 04:22:20, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_012898411 411 bp mRNA linear INV 15-JUN-2015
DEFINITION Acytostelium subglobosum LB1 hypothetical protein partial mRNA.
ACCESSION XM_012898411
VERSION XM_012898411.1
DBLINK BioProject: PRJNA280978
BioSample: SAMD00019534
KEYWORDS RefSeq.
SOURCE Acytostelium subglobosum LB1
ORGANISM Acytostelium subglobosum LB1
Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia;
Acytosteliales; Acytosteliaceae; Acytostelium.
REFERENCE 1
AUTHORS Urushihara,H., Kuwayama,H., Fukuhara,K., Ithoh,T., Kagoshima,H.,
Shin-I,T., Ohishi,K., Taniguchi,T., Noguchi,H., Kuroki,Y., Hata,T.,
Uchi,K., Mohri,K., Kohara,Y. and Fujiyama,Y.
TITLE Comparative genome and transcriptome analyses of the social amoeba
Acytostelium subglobosum that accomplishes multicellular
development without germ-soma differentiation
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 411)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (15-JUN-2015) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 411)
AUTHORS Urushihara,H., Itoh,T., Shin-I,T. and Fujiyama,A.
CONSRTM Acytostelium Genome Consortium
TITLE Direct Submission
JOURNAL Submitted (05-SEP-2014) Contact:Hideko Urushihara University of
Tsukuba, Faculty of Life and Environmental Sciences; Tennodai
1-1-1, Tsukuba, Ibaraki 305-8572, Japan
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. This record is derived from an annotated genomic
sequence (NW_012236521).
COMPLETENESS: incomplete on both ends.
FEATURES Location/Qualifiers
source 1..411
/organism="Acytostelium subglobosum LB1"
/mol_type="mRNA"
/strain="LB1"
/db_xref="taxon:1410327"
/note="scaffold: scaffold12"
gene <1..>411
/locus_tag="SAMD00019534_065910"
/db_xref="GeneID:24521918"
CDS <1..411
/locus_tag="SAMD00019534_065910"
/note="ADB0002164;
ASU06623;
homolog of Dictyostelium discoideum cofB"
/codon_start=1
/product="hypothetical protein"
/protein_id="XP_012753865.1"
/db_xref="GeneID:24521918"
/translation="
STGVKLANNCMEIFDQMKIRRQYGIVFYKLNDDNTQIVVEKTLPYGSPFTTFLTELPPTECRYVLVDFAYTEESTSKKRLVFVSWCPGTSSIRSRMIYTASKDALRKALVGIQTEVQGCDISEVQEEQFLEKITRL"
misc_feature 4..399
/locus_tag="SAMD00019534_065910"
/note="Cofilin, Destrin, and related actin depolymerizing
factors; Region: ADF_cofilin_like; cd11286"
/db_xref="CDD:200442"
misc_feature 4..9
/locus_tag="SAMD00019534_065910"
/note="putative G-actin interface [polypeptide binding];
other site"
/db_xref="CDD:200442"
misc_feature order(232..234,235..237,277..279,358..360,367..369)
/locus_tag="SAMD00019534_065910"
/note="putative F-actin interface [polypeptide binding];
other site"
/db_xref="CDD:200442"
ORIGIN
tcaactggagtcaaacttgcaaacaattgtatggagattttcgatcagatgaagattcgtcgtcaatatggaatagtcttttataagttgaacgatgacaatactcagattgtggtcgagaagactttaccatatggatcaccattcactactttcctcaccgagctacctcccactgaatgtagatacgtcttagttgactttgcctacaccgaagagtcaacctccaagaagagattggtgttcgtctcatggtgtccaggtacatcaagtattagaagtagaatgatatatactgcttcaaaggatgcacttcgcaaggcattggttggtatccaaactgaggtccaaggttgtgatatatctgaggtccaagaggaacaattccttgagaagatcacgaggttgtag
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]