2024-03-29 18:52:27, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_012552314 2058 bp mRNA linear MAM 31-DEC-2019 DEFINITION PREDICTED: Sarcophilus harrisii fibroblast growth factor binding protein 1 (FGFBP1), mRNA. ACCESSION XM_012552314 VERSION XM_012552314.2 DBLINK BioProject: PRJNA596784 KEYWORDS RefSeq. SOURCE Sarcophilus harrisii (Tasmanian devil) ORGANISM Sarcophilus harrisii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_045431.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 31, 2019 this sequence version replaced XM_012552314.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Sarcophilus harrisii Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2058 /organism="Sarcophilus harrisii" /mol_type="mRNA" /db_xref="taxon:9305" /chromosome="6" /cell_line="91H" gene 1..2058 /gene="FGFBP1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns" /db_xref="GeneID:100915364" CDS 102..803 /gene="FGFBP1" /codon_start=1 /product="fibroblast growth factor-binding protein 1" /protein_id="XP_012407768.1" /db_xref="GeneID:100915364" /translation="
MKMKCIALFSVLLLVSQLLLVDCEKQRKRKHGRDEKGEGKHPPGSPDKEEKGQKAKGGKRLPRGKFSTQENVPCTWAVTEKEGVALKVQCKGQEAQFECTFAGSPSSCPHYAGNEKAYWKQIGRALQKQRNLCADPKSILKSRVCKQGPKEAHLRMVDSSKKSQSQDKKGRKDPQTAAPTVGPAAATVQPTTAAQCEEDMEAINQRKVASEYCGDTWGSLCTFLLTMLQDKKC"
misc_feature 165..791 /gene="FGFBP1" /note="FGF binding protein 1 (FGF-BP1); Region: FGF-BP1; pfam06473" /db_xref="CDD:428962" ORIGIN
gccccggctgtataagtaacacgctggctcacgctgggttaccgagcagcctgcagtgcacccagtcggagcccggaaaggtttcctacccgagtggaagcatgaagatgaagtgcattgccctattctctgtcctgctcctggtctcacagctgctcttggtggactgtgaaaaacagaggaaaagaaaacacgggagagatgaaaagggcgaagggaaacatccccccggctctcctgacaaggaggagaaaggccaaaaggctaagggaggaaaaaggctccccaggggcaagttttccactcaagagaatgtcccttgtacttgggcagtgactgagaaggagggcgtcgccttgaaagttcaatgcaaagggcaggaggcccaatttgagtgtacctttgcaggcagcccttcctcctgcccccattacgcaggcaatgaaaaagcctactggaaacaaataggccgagccctgcagaaacagaggaacctttgcgcagaccccaagagcatcctcaagtcccgcgtgtgcaaacaagggcctaaagaagctcatctcagaatggtggactccagcaagaagagccagagtcaggataagaagggcagaaaggaccctcagacagcagcccccaccgtcggaccggctgccgccaccgtccagcccacgactgctgcccagtgtgaggaggacatggaggcgatcaaccagagaaaggtggccagcgaatactgtggggacacctggggctccctgtgcaccttcctgctcaccatgctgcaggacaaaaagtgctagcggactcccagctggagcctgtgctccccatgtgctgcagaaaagcctttcacgcttccctcccgcacggacttctctggcgtcacaagggaggggagcccagctacgtatttaagtctgttttgtattgttttgcttgttttgtattttggaatttatactttattggattttgttttcagtggccaacaatgttacaaaaactgtaaaagggcatgtgtgtgtacacataaatatagatgtaggtacatacacatgtatataaaagtgcaaatgttatacacaagtacgtggtctgtatagatacatacaaggtggtgtgtgtgtgtgtgtgtgtgtacacataaatatacatgcaggtagatgtaggtgcacatacatgtgtgtatatatatatatatatatatatatatgcaaatgtgcacaggtacatggtttgtatagatgcataccaggttgttgtgtacatgtaaatatacacatataaatgtagatgtgtatatatacatatatatgcaaattgcaaagcacatggtctgtatagatacatacaaggtgtgtgtgtacatgtaaatatacatgaaggtagatctaggtctatatacacatgtgtatgtacatgcaaatgtgcacaggtacatgatctgtgtaaatacataaactgtgtgtcttatgtacacataaatatacatgtgggtaaatgtagggacataaacgtgtatatacatgcaaatgtgcacaggtgcaaggtctgtctagatacaaggtggttgtatgtgtgtacacataaatatacatgcaggtagatgtaggtgtatatatacatatgtgtgtacatgcaaatgtgcacaggtacatggtcggtatagatacatacaaggttgtttttgtggatttgtggattcataaatatacatacaggtagttgtaggtacatatacacatgtgtatatacatgcaaaatgcatataggtccatggtctgtgtagataaacacaaggtggttgtatgtgtgtgcacataaacatacacgcaggtagatgtagggacatatacatgtgtatgtacacgtacatgggcacaggttcatggtcttatgtggtctgtgtagataacacacgctctcttcagttcctctttgggctcagctggccagagggggtttcagcgcagtgcactccctaacaccctgagaatgtttctgacctggccagcatctactttggccaagataataaagttttgcaaacatgtt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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