2024-04-25 08:53:08, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_012547321 4384 bp mRNA linear MAM 31-DEC-2019 DEFINITION PREDICTED: Sarcophilus harrisii NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X1, mRNA. ACCESSION XM_012547321 VERSION XM_012547321.3 DBLINK BioProject: PRJNA596784 KEYWORDS RefSeq. SOURCE Sarcophilus harrisii (Tasmanian devil) ORGANISM Sarcophilus harrisii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_045427.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 31, 2019 this sequence version replaced XM_012547321.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Sarcophilus harrisii Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4384 /organism="Sarcophilus harrisii" /mol_type="mRNA" /db_xref="taxon:9305" /chromosome="2" /cell_line="91H" gene 1..4384 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 35 samples with support for all annotated introns" /db_xref="GeneID:100929271" CDS 152..3760 /gene="NRDE2" /codon_start=1 /product="nuclear exosome regulator NRDE2 isoform X1" /protein_id="XP_012402775.2" /db_xref="GeneID:100929271" /translation="
MPRAQRAHAQCSISGVYPYVRVTEWGRRPWPGTMALFPAFAGVSAAPESSAGGSSRKDLDWLSNPSFCTGNVPTLQQNTVEITALASEKELLTRSPLKLELSEGSDTHKRIKQASRKKKKEKKKKKKHQHHKKTKKKYEQSSDSESYSATDSEKETSTGCIIYSKKEVEKPNSQENNATDNSGSHLVWLDDIQTLTTETFRTDKKPDPANWEYKSLYRGDIARYKRKGNSCLGINPKKQRISWEGTSTEKKQLHKKFERYFSKKSMRSVSSDGAPVCSKAEVFSSDLSPFIPVKDSDDEVPSSTSTWVNPLGVYDKSTTLWLQGQGPSDQETKQPTSQKDSEEVILKAKVEEFNRKVRENPRDIQLWLEFVSFQDEVMKRPSLYTISEGEQESRRKSLKLILEKKLSILERAIESNQNSVELKLARLKLCTEFWEPSTLIKEWQKLIFLHPNNTSLWQKYLLFCQSQFSTFTVSKIHNLYGKCLSTLAAVQDGSILSHPALPGTEEAMFALFLQQCHFLRQAGHTEKAISLFQAMIDFTFFKPDSVKDLPTRGQVEFFEPFWDSGEPRVGEKGARGWRAWMHQQERGGWVVIKPDEDEDEPEEDDQEIKNKTLPKWQIWLSVEHSREQRHWLPWRPDKTKKQTDEDCDDPERQVLFDDLGLSLIKLPSLDLKFQLIDSFLQFLGVPSSYNLPASCLYLAMDENGIFDDGISDEKPLTFFNPSFSGINCVGRMDKMNRQEHRMGHCKEGEEFIQNIFHLVLPLFSGKEKSHLCLSWLQYEIAKVTWCLQTKNKKRLKSQGKKCKKLAKNLLKEPDNRNNFCLWKAYAHLEWLLGNIEDARKVFDTAISMAGPEDLSSRLFDLSLLYAELEVELSGNLEGATTSRAIHILTKLTENGPYIPYTGQVLAMNILKARKAYEHMLQKHLNESSAPDPSSFNCSGHLVGMVGCFMLFQYLTIGVNAAMHIYKQVYERLKGSISSEFSRLSANIGAQNLTNALEAVTLMHANLLRYHMKVSVFPLNPLRETLSEALKLYPDNQVLWRSYIQIQNKSHNASKTRRFFDIIIRSSESLEPRLFAIQAEKMRKRLVEAVLREEAGEIHSTIPETGLSNRIKVLFENAVQSDNGSNCPLLWRMYLNFLVSLGNKERSKGVFYRALQHCPWAKVLYMDAMDYFPDQFQEILDLMTEKELRVRVPIEELELLLED"
misc_feature 746..1036 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(746..772,779..784,794..799,803..805,809..853, 860..868,872..880,902..910,920..925,929..934,941..961, 986..997,1007..1036) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1205..2203 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
taaatgacactgtggtggtcggtttgaagatattgcaaaatgaggttggattgtggggcctggaagcccccggcctcttgagttccacggcggtctatctcggctaaacagtctcacttacacacagcgctaaaagaccacatcccccacaatgccccgcgcccagcgcgcgcatgctcagtgctcgatatcgggtgtttatccttatgtgcgtgttacggagtggggccggcggccctggcccggaaccatggccctgttcccggcctttgctggtgttagtgcagcccctgagtcctccgctggtggtagctcgaggaaggatttagactggttgagcaacccaagcttttgtactggaaatgtgccaactctgcaacaaaatactgtagagattacagctcttgcttctgaaaaggaactgctcacaaggagccctttaaaactggaactttcagaagggagtgatacacacaaaaggattaaacaagcaagtagaaaaaagaagaaagaaaaaaagaaaaagaaaaaacaccaacatcacaagaaaaccaagaaaaaatatgagcagtctagtgacagtgaatcttattcagctactgactctgaaaaggagacatctacaggatgcatcatttacagtaaaaaggaagttgagaaaccaaacagccaagaaaataatgccactgacaacagtggaagccaccttgtttggcttgatgacattcagaccctgacaacagaaactttcagaacagataagaaaccagatccagcaaactgggagtataaatccctttatcgtggagatatagcaagatacaagaggaagggaaactcttgccttggtattaaccccaaaaagcaacgtatatcttgggaaggtacctctacagaaaagaaacaattgcataagaaatttgaacgctacttttctaagaaaagcatgcgttcagtaagcagtgatggagctcctgtttgtagcaaagctgaagtattctcatctgatctcagcccattcatcccagtgaaagactctgatgatgaagttccatcttctacctcaacttgggtgaatcctttgggagtctatgataaatctacaacactctggttacaaggacagggtccttcagaccaagaaacaaagcaacctacatctcagaaagatagtgaagaagttattctaaaagctaaagtagaggaatttaacagaaaagtccgagagaatcctagggatattcaactgtggctggaatttgtgtcttttcaagatgaagtgatgaaaagaccaagcctatacaccatcagtgaaggagagcaagagtccagaagaaaatcactgaagctaattctggaaaagaaattgtccattttagaacgtgccattgaaagcaaccagaacagtgtggaactgaagcttgccaggctaaaactctgtacagaattctgggaaccatctactttgatcaaagagtggcagaaactgatttttttacaccccaataatacatccttatggcagaaatacctcttattttgccagagccaatttagcacctttacagtatccaaaattcacaatctgtatggaaaatgccttagcaccctggcagcagtacaagatgggagcatcttatctcatcctgcattgcctggaactgaagaagctatgttcgccctctttcttcagcagtgtcattttctcagacaagctggccacactgaaaaagcgatttctttgttccaagccatgattgactttaccttcttcaaacctgacagtgtgaaagatcttcctaccaggggacaggtggaattctttgaacctttttgggatagtggagaacctcgggttggagaaaagggagcaagaggctggcgagcctggatgcaccagcaagaaaggggtggctgggtcgttattaagcctgatgaggatgaagacgaacctgaggaggatgatcaagaaataaagaataaaactcttccaaagtggcagatctggctcagtgttgagcattcccgtgaacaaaggcactggctgccctggcgccctgacaaaaccaaaaaacaaactgacgaggattgtgatgacccagagagacaggtgttatttgatgatctaggcctatctctcataaaacttcctagtttggatctaaaatttcaactgattgattcatttctacaattcttgggagtcccttcaagctataatcttccagcttcatgcctctatcttgccatggatgaaaatggtattttcgatgatgggatttctgatgaaaaaccattgacttttttcaatccatcattttccgggattaattgcgtcggtcgcatggacaaaatgaacagacaggaacatcggatgggtcactgcaaagaaggcgaggagttcatacagaatatatttcatcttgtattgcccctattttcagggaaagaaaaatctcatctctgcctttcgtggttacagtatgaaattgctaaggtcacttggtgtctgcaaactaaaaacaagaagagactgaagtctcaagggaaaaaatgcaaaaaactagccaagaatctcctcaaggaacctgacaacagaaacaacttttgcctttggaaagcatatgcccacctagaatggttacttggcaacatagaagatgcaaggaaggtttttgacactgctattagcatggcagggccagaagacttaagttctagactctttgacttaagcttgctttatgctgaactagaagtagaactctcagggaacttggaaggggctactacatccagagcaattcatatattaactaaactgactgagaatggtccatacataccttatactggacaggtattagctatgaacattttgaaagcccgcaaagcatatgagcacatgctgcagaagcatttaaatgaaagttcagctcctgacccatcttcttttaattgttctggtcatttggttggcatggttggctgctttatgcttttccagtatttgaccataggagttaatgctgctatgcatatatataaacaagtgtatgaaagacttaaagggtccatttcatcagaattctcaaggctgagtgcaaatattggagcccaaaatttgaccaatgcccttgaagctgtcacactgatgcatgcaaatctactcaggtaccacatgaaagtgagtgtgttccctttgaatcctctgagagaaacgctttcagaggctttaaaattatatccggacaaccaggttctttggagatcgtatatacagatccaaaataaatcccataatgccagcaagacaagaagattctttgatatcattataaggtcttccgaatccctagagccacggctgtttgcaatccaagctgagaaaatgagaaaaaggctggtggaagctgttctgagagaagaagctggagaaatccattcaacaattcctgaaacaggtttatcaaatcgaatcaaagtcttatttgaaaatgcagttcagagtgataatggcagcaattgccccttgttatggaggatgtatttgaattttctggtttctctaggaaacaaagaacgaagcaaaggtgtattttacagagccctccagcactgtccttgggcaaaggtgttatatatggatgcaatggattatttccctgatcaattccaggaaatcctggatctgatgactgaaaaggaattaagagttcgggtaccaatagaagaactagagcttctcttagaagattaataatgagtggaacaagatgattaatggagttaagactgaggtttgacagtcctgtaatagctgtgggaatgtacaaattgggaaacttggactaggagtggaacatttttttcctttattttttaaggacttatttaaaattttaaggtttctgggccagtgtaatgtatttttaagtattcagatgtctctcacaacctccatgtgtttagaagatttatttacacagaatgagttattttatagatcatatatatgaatatgatgtacatatgtacagaaagacagacttgggaataaataaatcttttgtaattggttccctttaaagccaatgcttcatgtggttcattatcagcatgctaaatgtttcttcttagaggacttggagatcaagagccaagtatactcgcctccttcacctgaattagatgtgggttatgtatgattctggggctaaagatctaatcctattgtgaccatcatctgttagggatcatttatttgcgtaaaataaaactttgaccttctctttgccaagtcaaatttgagggttgatatttttcagtcacgttcaactttgtgaccctgtgaaccatactgtctatgggttttcttggcaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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