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2024-03-29 19:06:02, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_012488465            3922 bp    mRNA    linear   INV 23-DEC-2019
DEFINITION  PREDICTED: Apis florea protein argonaute-2 (LOC100870792),
            transcript variant X3, mRNA.
ACCESSION   XM_012488465
VERSION     XM_012488465.2
DBLINK      BioProject: PRJNA86991
KEYWORDS    RefSeq.
SOURCE      Apis florea (little honeybee)
  ORGANISM  Apis florea
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita;
            Aculeata; Apoidea; Anthophila; Apidae; Apis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_003790919.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 23, 2019 this sequence version replaced XM_012488465.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Apis florea Annotation Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3922
                     /organism="Apis florea"
                     /mol_type="mRNA"
                     /db_xref="taxon:7463"
                     /chromosome="Unknown"
                     /sex="male"
                     /note="haploid drones"
     gene            1..3922
                     /gene="LOC100870792"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 ESTs, 69 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 71 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100870792"
     CDS             139..2832
                     /gene="LOC100870792"
                     /codon_start=1
                     /product="protein argonaute-2 isoform X2"
                     /protein_id="XP_012343919.1"
                     /db_xref="GeneID:100870792"
                     /translation="
MYPVGQPPPPGPTTSSSVGAAGATGSSVVASSSLGLVSTQQTHTPPQPPELPMFSCPRRPNIGREGRPIVLRANHFQITMPRGYVHHYDINIQPDKCPRKVNREIIETMVHAYTKIFGTLKPVFDGRNNLYTRDPLPIGTDKIELEVTLPGEGKDRVFRVVIKWLAQVSLFALEEALEGRTRQIPYDAILALDVVMRHLPSMTYTPVGRSFFSTPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRDIGDQKRPLTDSQRVKFTKEIKGLKIEITHCGTMRRKYRVCNVTRKPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRHPYLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREINNLVRRADFNNDSYVQEFGLTISNNMMEVRGRVLPPPKLQYGGRVSSLSGQTKQQAIPNGGVWDMRGKQFFTGVEIRVWAIACFAPQRTVRDDAIRNFIAQLQRISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKATFSSLQLVCVILPGKTPVYAEVKRVGDTLLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPTIRPKVFDEPVIFFGADVTHPPAGDNKKPSIAAVVASMDAHPSRYAATVRVQQHRQEIIQELSSMVRELLLMFYKSTGGYKPLRIILYRDGVSEGQFLHVLQHELTAIREACIKLEAEYRPGITFVVVQKRHHTRLFCSEKRDQSGKSGNIPAGTTVDVCITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNRFESDELQSLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSHQSGCSEDRTPGAMARAITVHANTKRVMYFA"
     misc_feature    337..726
                     /gene="LOC100870792"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    754..906
                     /gene="LOC100870792"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    907..1269
                     /gene="LOC100870792"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1063..1065,1108..1110,1150..1152,1162..1164,
                     1216..1218,1237..1239,1243..1245)
                     /gene="LOC100870792"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1405..2703
                     /gene="LOC100870792"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1834..1836,1846..1848,1882..1893,1900..1902,
                     1924..1926,1933..1935,1945..1947,1957..1959)
                     /gene="LOC100870792"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2038..2040,2044..2046,2257..2259,2671..2673)
                     /gene="LOC100870792"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
gtggcagccattgcaggaggcagtctcgttcgcagtgtgtattgtggagaagtgtgttgtgtggtcagtgggttttgtgttaaattttttacttatttattagtggttatctggtctttttcaccgtcagctgcaaaaatgtatcctgtagggcagcctcccccacctggacccacaacaagttcttctgttggagcagctggagcaactggaagcagtgttgtagcttctagttctttagggcttgtttccacacaacaaacacacactcctcctcaacctcctgaactgccaatgttttcatgtcctcggagaccaaatataggacgtgaaggcaggccaattgtcttaagagctaatcacttccaaataacaatgccacgtggttatgtgcaccattatgatattaatattcaacctgataaatgtcctcgtaaagttaatagagaaataatagaaacaatggttcatgcatataccaaaatatttggaactcttaagcctgtatttgatggaagaaataatttatatacaagggaccccttgcctattggtactgataaaatagaattagaagtaacactgcctggtgagggtaaagatagagttttcagagttgtgataaagtggttggctcaagtttcactatttgcattagaagaagctttagaaggacgaacaagacaaattccatatgatgctatacttgctttagatgttgtaatgaggcatttaccatctatgacatatactccagtaggtagatcattctttagcacaccagatggatattatcatccattaggtggtggaagagaagtttggtttggttttcatcaatcagttaggccatctcaatggaaaatgatgttaaatattgatgtatctgcaactgcattttataaagcacaacctgtcatagaatttatgtgtgaagtattagacattcgagatataggagaccaaaaaagacctttaacagattctcaacgggttaaatttaccaaagaaattaaaggacttaaaattgaaatcacacattgtggaacaatgagacgaaaatacagagtgtgtaatgttacacgtaaacctgctcaaatgcaatcattcccattacaattagaaaatggacaaacagttgaatgtacagttgcaaaatatttcttagataagtataaaatgaagttacgtcatccatatcttccatgtcttcaagttggacaggaacataaacatacatatttgccacttgaggtctgcaatattgttgctgggcaacgttgtatcaaaaaattgactgatatgcagacttctactatgataaaagctacagctcgttctgctccagatcgcgaaagagaaataaataatttagttagaagagctgattttaataatgattcatatgttcaagaatttggtttgacaatatcaaacaatatgatggaagttagaggtcgtgttctacctccacccaaactacagtacggagggcgcgtaagttccctcagtggacagacgaaacaacaagctatacctaatggtggtgtttgggatatgcgtggaaagcaatttttcacgggtgtggaaattagagtttgggcaattgcctgttttgctccacaaagaactgtacgagatgacgcaatacgtaattttatagcacaattacaaagaataagcaatgatgctgggatgccaattattgggcaaccatgtttttgtaaatatgctactgggccagatcaagtagagcccatgtttagatatttaaaagcaacattttcatcattacaacttgtttgtgttatattacctggaaaaacgcctgtatatgctgaagttaaaagagtaggagatacattattgggtatggcaacgcaatgtgtacaagcaaaaaatgttaataaaacatcaccacaaacgttgtcaaatttatgtttaaaaattaatgtaaaattaggtggtattaatagtattctagtacccactattagaccaaaagtatttgatgaacctgttatattttttggagctgatgtgactcatccacctgctggagataataaaaaacctagcatagctgcagtagttgccagtatggatgcacatccatctcgatatgcagctactgttagagttcaacaacatagacaagaaattattcaagaacttagttcaatggtgagggaacttcttcttatgttctacaaaagcactggaggatataaaccgctcaggataattctttatcgtgatggtgtctcagaaggtcaatttcttcatgttctgcaacacgagctaactgccattcgtgaagcttgtattaaacttgaagctgaatatagacctggaataacattcgttgtcgtccaaaaaagacatcacactcgcttattttgttcagaaaaaagagatcaaagcggtaaaagcggaaatatacctgcgggtacgacagttgatgtttgtataacgcatccaactgaatttgatttttatttatgtagtcatcaaggtatccagggcacgtcacgaccatcacattatcatgttttatgggatgataatcgttttgaaagtgatgaattacagtctctaacttatcaattatgtcacacatatgtcagatgtacgagatctgttagtatacctgcacctgcatattatgctcatcttgtagcattccgagccagatatcatttggtagaaaaagagcatgatagtggagaaggatctcaccaatctggctgcagtgaagacagaacaccaggtgcaatggcaagagctatcacagttcatgcaaatacaaagcgggttatgtactttgcataattttcttttgaatttttcttatacacatgcaattgatataaaaatcatcatatcttatacgaagatatttctagactatttaaatattagacaatcttcttgagtggtcaattttttttgcttatttttataatcaaatatgtcgaaaatatagctaaaatatgtcaaataattttttattaagcttggtttttttcttttttttatgttctatttaatatattgtcgattaggttttaggcaaattttctaacattttagtaagtaggtattaaaagaggtgcttttagttaatcatgttttagattgatgcagcttgaccagtgtgtcgttttatgataaagatcacacgaataaataatataagaaatcagctgccgtggatattacgcttatttcttttttttagaggttaaatttcctctagcatttgtagaatacaaaaatattacattaaaacataaattcatgattgtataaatcgctttgcaagactgttatcttgttgtttatatgtagttatatcatttgatcagtcattttttatataaaaaaaaaaataaaaaaaataaaaaaaattaagatttccaagtcatatgaggataaaatattagcatgtatatcctatcttcatgcttaagcatatttgttattatgcaattatgattctataatgattctatcttatgacattatgattctttataaatatcatatctttcatgtctatcatatttatcataagcattaaaaaatttggccacatcaagtaatgaattgtcaatcaagataatatatctaatttaatattataaattgaaaatccagaagtacatattttattctatttggtttaattgtactattttttgcatgtggaatgagaattatgatagcttgaactgtggtactttattcatatcaactatacattaacataacattttgacaaaggtaaatgaataccttttatctggtgtttcaaatacgcaacattatctcttcaggcaagacaagtacttttaagtgaaatctttatggcattagattcgggttaataactaacgccccatcaacgcagaaaataatt
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]