2024-03-29 19:06:02, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_012488465 3922 bp mRNA linear INV 23-DEC-2019 DEFINITION PREDICTED: Apis florea protein argonaute-2 (LOC100870792), transcript variant X3, mRNA. ACCESSION XM_012488465 VERSION XM_012488465.2 DBLINK BioProject: PRJNA86991 KEYWORDS RefSeq. SOURCE Apis florea (little honeybee) ORGANISM Apis florea Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003790919.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 23, 2019 this sequence version replaced XM_012488465.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Apis florea Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3922 /organism="Apis florea" /mol_type="mRNA" /db_xref="taxon:7463" /chromosome="Unknown" /sex="male" /note="haploid drones" gene 1..3922 /gene="LOC100870792" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 69 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 71 samples with support for all annotated introns" /db_xref="GeneID:100870792" CDS 139..2832 /gene="LOC100870792" /codon_start=1 /product="protein argonaute-2 isoform X2" /protein_id="XP_012343919.1" /db_xref="GeneID:100870792" /translation="
MYPVGQPPPPGPTTSSSVGAAGATGSSVVASSSLGLVSTQQTHTPPQPPELPMFSCPRRPNIGREGRPIVLRANHFQITMPRGYVHHYDINIQPDKCPRKVNREIIETMVHAYTKIFGTLKPVFDGRNNLYTRDPLPIGTDKIELEVTLPGEGKDRVFRVVIKWLAQVSLFALEEALEGRTRQIPYDAILALDVVMRHLPSMTYTPVGRSFFSTPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRDIGDQKRPLTDSQRVKFTKEIKGLKIEITHCGTMRRKYRVCNVTRKPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRHPYLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREINNLVRRADFNNDSYVQEFGLTISNNMMEVRGRVLPPPKLQYGGRVSSLSGQTKQQAIPNGGVWDMRGKQFFTGVEIRVWAIACFAPQRTVRDDAIRNFIAQLQRISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKATFSSLQLVCVILPGKTPVYAEVKRVGDTLLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPTIRPKVFDEPVIFFGADVTHPPAGDNKKPSIAAVVASMDAHPSRYAATVRVQQHRQEIIQELSSMVRELLLMFYKSTGGYKPLRIILYRDGVSEGQFLHVLQHELTAIREACIKLEAEYRPGITFVVVQKRHHTRLFCSEKRDQSGKSGNIPAGTTVDVCITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNRFESDELQSLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSHQSGCSEDRTPGAMARAITVHANTKRVMYFA"
misc_feature 337..726 /gene="LOC100870792" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 754..906 /gene="LOC100870792" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 907..1269 /gene="LOC100870792" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1063..1065,1108..1110,1150..1152,1162..1164, 1216..1218,1237..1239,1243..1245) /gene="LOC100870792" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1405..2703 /gene="LOC100870792" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1834..1836,1846..1848,1882..1893,1900..1902, 1924..1926,1933..1935,1945..1947,1957..1959) /gene="LOC100870792" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2038..2040,2044..2046,2257..2259,2671..2673) /gene="LOC100870792" /note="active site" /db_xref="CDD:240015" ORIGIN
gtggcagccattgcaggaggcagtctcgttcgcagtgtgtattgtggagaagtgtgttgtgtggtcagtgggttttgtgttaaattttttacttatttattagtggttatctggtctttttcaccgtcagctgcaaaaatgtatcctgtagggcagcctcccccacctggacccacaacaagttcttctgttggagcagctggagcaactggaagcagtgttgtagcttctagttctttagggcttgtttccacacaacaaacacacactcctcctcaacctcctgaactgccaatgttttcatgtcctcggagaccaaatataggacgtgaaggcaggccaattgtcttaagagctaatcacttccaaataacaatgccacgtggttatgtgcaccattatgatattaatattcaacctgataaatgtcctcgtaaagttaatagagaaataatagaaacaatggttcatgcatataccaaaatatttggaactcttaagcctgtatttgatggaagaaataatttatatacaagggaccccttgcctattggtactgataaaatagaattagaagtaacactgcctggtgagggtaaagatagagttttcagagttgtgataaagtggttggctcaagtttcactatttgcattagaagaagctttagaaggacgaacaagacaaattccatatgatgctatacttgctttagatgttgtaatgaggcatttaccatctatgacatatactccagtaggtagatcattctttagcacaccagatggatattatcatccattaggtggtggaagagaagtttggtttggttttcatcaatcagttaggccatctcaatggaaaatgatgttaaatattgatgtatctgcaactgcattttataaagcacaacctgtcatagaatttatgtgtgaagtattagacattcgagatataggagaccaaaaaagacctttaacagattctcaacgggttaaatttaccaaagaaattaaaggacttaaaattgaaatcacacattgtggaacaatgagacgaaaatacagagtgtgtaatgttacacgtaaacctgctcaaatgcaatcattcccattacaattagaaaatggacaaacagttgaatgtacagttgcaaaatatttcttagataagtataaaatgaagttacgtcatccatatcttccatgtcttcaagttggacaggaacataaacatacatatttgccacttgaggtctgcaatattgttgctgggcaacgttgtatcaaaaaattgactgatatgcagacttctactatgataaaagctacagctcgttctgctccagatcgcgaaagagaaataaataatttagttagaagagctgattttaataatgattcatatgttcaagaatttggtttgacaatatcaaacaatatgatggaagttagaggtcgtgttctacctccacccaaactacagtacggagggcgcgtaagttccctcagtggacagacgaaacaacaagctatacctaatggtggtgtttgggatatgcgtggaaagcaatttttcacgggtgtggaaattagagtttgggcaattgcctgttttgctccacaaagaactgtacgagatgacgcaatacgtaattttatagcacaattacaaagaataagcaatgatgctgggatgccaattattgggcaaccatgtttttgtaaatatgctactgggccagatcaagtagagcccatgtttagatatttaaaagcaacattttcatcattacaacttgtttgtgttatattacctggaaaaacgcctgtatatgctgaagttaaaagagtaggagatacattattgggtatggcaacgcaatgtgtacaagcaaaaaatgttaataaaacatcaccacaaacgttgtcaaatttatgtttaaaaattaatgtaaaattaggtggtattaatagtattctagtacccactattagaccaaaagtatttgatgaacctgttatattttttggagctgatgtgactcatccacctgctggagataataaaaaacctagcatagctgcagtagttgccagtatggatgcacatccatctcgatatgcagctactgttagagttcaacaacatagacaagaaattattcaagaacttagttcaatggtgagggaacttcttcttatgttctacaaaagcactggaggatataaaccgctcaggataattctttatcgtgatggtgtctcagaaggtcaatttcttcatgttctgcaacacgagctaactgccattcgtgaagcttgtattaaacttgaagctgaatatagacctggaataacattcgttgtcgtccaaaaaagacatcacactcgcttattttgttcagaaaaaagagatcaaagcggtaaaagcggaaatatacctgcgggtacgacagttgatgtttgtataacgcatccaactgaatttgatttttatttatgtagtcatcaaggtatccagggcacgtcacgaccatcacattatcatgttttatgggatgataatcgttttgaaagtgatgaattacagtctctaacttatcaattatgtcacacatatgtcagatgtacgagatctgttagtatacctgcacctgcatattatgctcatcttgtagcattccgagccagatatcatttggtagaaaaagagcatgatagtggagaaggatctcaccaatctggctgcagtgaagacagaacaccaggtgcaatggcaagagctatcacagttcatgcaaatacaaagcgggttatgtactttgcataattttcttttgaatttttcttatacacatgcaattgatataaaaatcatcatatcttatacgaagatatttctagactatttaaatattagacaatcttcttgagtggtcaattttttttgcttatttttataatcaaatatgtcgaaaatatagctaaaatatgtcaaataattttttattaagcttggtttttttcttttttttatgttctatttaatatattgtcgattaggttttaggcaaattttctaacattttagtaagtaggtattaaaagaggtgcttttagttaatcatgttttagattgatgcagcttgaccagtgtgtcgttttatgataaagatcacacgaataaataatataagaaatcagctgccgtggatattacgcttatttcttttttttagaggttaaatttcctctagcatttgtagaatacaaaaatattacattaaaacataaattcatgattgtataaatcgctttgcaagactgttatcttgttgtttatatgtagttatatcatttgatcagtcattttttatataaaaaaaaaaataaaaaaaataaaaaaaattaagatttccaagtcatatgaggataaaatattagcatgtatatcctatcttcatgcttaagcatatttgttattatgcaattatgattctataatgattctatcttatgacattatgattctttataaatatcatatctttcatgtctatcatatttatcataagcattaaaaaatttggccacatcaagtaatgaattgtcaatcaagataatatatctaatttaatattataaattgaaaatccagaagtacatattttattctatttggtttaattgtactattttttgcatgtggaatgagaattatgatagcttgaactgtggtactttattcatatcaactatacattaacataacattttgacaaaggtaaatgaataccttttatctggtgtttcaaatacgcaacattatctcttcaggcaagacaagtacttttaagtgaaatctttatggcattagattcgggttaataactaacgccccatcaacgcagaaaataatt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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