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2024-04-19 16:16:18, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_011726281            6513 bp    mRNA    linear   PRI 24-APR-2018
DEFINITION  PREDICTED: Macaca nemestrina claudin 17 (CLDN17), mRNA.
ACCESSION   XM_011726281
VERSION     XM_011726281.1
DBLINK      BioProject: PRJNA279145
KEYWORDS    RefSeq.
SOURCE      Macaca nemestrina (pig-tailed macaque)
  ORGANISM  Macaca nemestrina
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Cercopithecidae; Cercopithecinae; Macaca.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_012015021.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Macaca nemestrina Annotation Release
                                           101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6513
                     /organism="Macaca nemestrina"
                     /mol_type="mRNA"
                     /isolate="M95218"
                     /db_xref="taxon:9545"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
     gene            1..6513
                     /gene="CLDN17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:105472757"
     CDS             1966..2640
                     /gene="CLDN17"
                     /codon_start=1
                     /product="claudin-17"
                     /protein_id="XP_011724583.1"
                     /db_xref="GeneID:105472757"
                     /translation="
MAFYPLQIAGLVLGFLGMVGTLATTLLPQWRVSAFVGSNIIVFERLWEGLWMNCIRQARARLQCKFYSSLLALPPVLETARALMCVAVALSLIALLIGICGMKQVQCTGSNERAKAYLLGTSGVLFILTGIFVLIPVSWTANVIIRDFYNPAVHIGQKRELGAALFLGWASAAVLFIGGGLLCGFCCCNRKKQRYRYPVPGHCVPHTDKRRNMKMPSNTSTSYV"
     misc_feature    1981..2511
                     /gene="CLDN17"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:451326"
ORIGIN      
gcctcagatttttatatttaaacaaacgtatgttttcacttataatacagacaatatgctctagctgatgagaaagcaaataattggaaaaaaattttggaaacttccaggacaaaatgagcatagcaatacatctgagatagaatgaggaagaggaactagaatgaggaagaggaactagaatgaggaagaagacccagaagtaacaagtcagagtaatgctggaaaatcctgtcagggagggaatggttaagcctatgtctcagtaaccatgaacaaagggccaaggaaacccttcatccaatctggtgttgggaaactgttaacaacacagaagtcatctgtttgctcaatgattcacattccttagagagggagttctcagaccaatcatcttgaaaactcaatggttttcacattcatgaagtcagtgaatggactctaaatctggttgccattggaccacccattaaatctttggcctgtaactgattgagatggaggacattttgcaaaccgtgatgtctcccacctggagtgtggttggcgttcttgctttggagtcattttcatctttacaatagatcccttgccagtgggatgtaaaaggaaaaggaaaaaggtccacttttcccacacgaagccccccactgcctctagggagtggcaggaaagtggcagtcaaaagttacaacttgacttaaattttgaaataatctcaactgaatttttcttcctttgaaaaccatttgaaaaactgtagatagtgccacatttccactaggtttagtcccacttatatgaaaagattgaaaaagtaatctctccttcctatttttgaatcagactagacagagaaagtaagcatagtgagttacagacctgggcttgttcccggatcaggtgccacatggcttgtctcagccaaacactttgcacaccttccgttcatctggcaaataagggtgttaagtttgatggccttgacgataacttccagcactaaaatgttctctagcgtctaaatttcaagtgactgcatagccaatttcaagggccacttttatattgttccataaaaatgaaaggtacgtgtttggccttaataaatgtgatctatttcaagctgccattgaagaaacactgaatgaaagtttccatactaaacattacttaacagagagaggtgttacttaacagttaaagtaataattaacagttcattcaaattaattataaggaatacttctctgttttcttcttttctggatcttaagagtaaactatgaaatgtgaatttcttgcttagggctcctcctaagtatcaatagttttcgtgtgtcttgaaactaatacgtaaacatttctgcatatcgaggtatctttattaaagccagaattgattaccatcttaaggaaaagtggcttacactagaataaagtaatagtttaaagtccaaaatgttttttaattactctccaataaactgacaaggttttggcattgtcttcagctgtgccttaacacatatatttatacttttatatcagagtgattttttacacaggaagtttcagctctgtaattagcaattcacaatggagactttgacacttaattacagcattgctaagacaataataatgtgagaaatcctaaagctgaatgcagtatttcttgacacacccctagctaccttcttattggctgggaaacaattatatatgactagtaaataatccatagagaaatgaatgtatatgaaaaaaggcaacatgcatttacaacaggtacttctagttaggccaagttcagtcacagccactgatttggactaaaatgatatgggcagcagccaaggagaacatcatcaaagacttctctagactcaagagccttccacgttctacatcttgagcatcttctaccactccgaattggactagtcttcaaagtaaaaggcaatggcattttatcccttgcaaattgctgggctggttcttgggttccttggcatggtggggactcttgccacgacgcttctgcctcagtggagagtatcagcttttgttggcagcaacattattgtctttgagaggctctgggaagggctctggatgaactgcatccgacaagccagggcccggttgcaatgcaagttctatagttcattgttggctcttccgcctgtcctggaaacagcccgggcactcatgtgtgtggctgttgctctctccttgatcgccctacttattggcatctgtggcatgaagcaggtccagtgcacgggctctaatgagagggccaaagcatatcttctgggaacttcaggagtcctcttcatcctgacgggcatcttcgttctgattccggtgagctggacagccaatgtaatcatcagagatttctacaacccagctgtccacataggtcagaaacgagagctgggagcagcacttttccttggctgggcaagcgctgctgtcctcttcattggaggcggtctgctttgtggattttgctgctgcaacagaaagaagcaaaggtacagatatccagtgcctggccactgtgtgccacacacagataagcgaagaaacatgaaaatgcctagtaatacctccaccagttatgtctaatgcctgcttttggctccaagtgtggactatggtcaatgtttgttataaagtcctgctagaaactgtaagtatgtgaggcaggagaacttgctttatgtctagatttaaattgatatgaaagtttcaatttgttactggtaggaaaacttggacattctgacttcaggtgtattaaatgcatttactattgttggactcaatcgctgttccaatgttcatattctaaatgtaagtatacccataatcattatcaagtgcacaatgatggactactagtttttgaccatcatattttatctgataagaatcaaaatttgaaatcgatattctataacaataaaacatatacctattctaaaatgtaagctattatttttcctctacattgtttcttgtactacacactaacaactaaatgatgacctttttcaaaagattatcatggaaaattgtagatatcaaacaataatttttagttgaaaatgtcaaaacatgaaaatgtccatctaatgaaagactttgttcctttaggaactcacacaattacaattagacactttagtgaaaagggagctctgatttatcttaggacaattaagaagacagattttaaggtctctaatttatacagttaaacttgcctagaatcactgtttaaaggaaaataatttataaatgaaaaataatatttttcatagcctatcatctgtacttcaagcaaacggaagcatctatcttgataagacacatcaatggaaggctattaacactcaattcttatctagaggttatacggtcccaattagagaattgcagttggggcattgaagggaatggtttctattctttgttttattctttagtcattgcacaggtacaaacatgctaagcaattcgaagaattaaggttatgattcagacaagtagtcaggctaagttaaataccttttttgtattctctactaaacaaataggtatggtgaaaatatttttgttttgcttgaattacatgcacaattttctcaatacttcatttcccatgtgtacatatcaatatcagggttaaaagtgtggtggatcatgtggggtaagagtgagtagggagtgtttatgaggcaagaccacctgtatgggttgcttctgaatagcttttacatcttgtgaatcaatcaatttttgtatgttcagttttaactcttcaaatattgtgcttattttgtaataaaaatgtatttaattttgagtatataattgcaatgagaagcctgaatttgctcaccaaatatttattgcatcttcatccttattataatgaaataaaatagattacaatgatgttgatatatttagctgtggggtcaattagaataaatttctgtcctcacaagatcacctagtaactctgaaacattaaatcagggataactcaagcctggatgttaatatccaaccttcactccattctacaaaccaccagcaagatgtcagtaggtgaagcccctggtaatataaaactgtatttaaaacactggtaatattaaatgataagatcacacaagtataaatatcttcaaagattagcaataaaaataagaaaaacagtgattaagatgaatttttcttaagattgattttttttaatcagacttgattcagaaaggcctaatattgggtatgttggaaaagagtcatttttcttttacagtcaaataagtaagccatctagacaagcaagatatatacctaaaagttgtcatagaatcatttttcttacctttttgctcacctagaagtaattagctttacaagaatggattcctcagcctaaacggggaagtatgttattctgctagccagtaggtcaaagagtaaaaaaacacttggtgcaattataagataatattagctattgaatatgtggcaacatttcaggaactacgttttttgttgcttgcccttccattaatcaatgtgtagctttagaaagattatttttccctgttccactctgctgtagtatttttccaattacaccaaaaataaattttactaattttccatgaacttaaagatgcatgaagagtgcatatttcctactacaaacccaagcgtgcacgacatttatctttattttctaaaatataattgaagttcaacttcttgagtacttgctcacatattatacagttgttaggatcttatgcagggctaaacagtgttccatggtggtttctgggatgagtccatgaccatcagtccctgcaggtgtctgagaagatgtctattttatctgcccacagagtctttgtgggcttcttagctctgtcgattctgtcatacttggccattaattgtcttgactcttgttctgggttgcttgaatcagtagatttcaaccctggcggtatgttagaatcgcttagggaactttgaaaaataccagtatagctggtgttgagatgatccatggcaccattttccagagtcttatccgggaacctgacctgctatccacaagcagtggtagagaaaatggctacttcccaataaaatgtttttaatgtcacctctgtaacccttcttcttcttccccactgtcaaaaaccttgtacaatttcataaaggttttcagaagcaaaatgcataggttgcttttgccttccatttttctacatactcagtgaaatgctttgctgaccaccttctggaatggggaccaaagcaaagggggaaaatgtaaggaggggaaatagttaacgtcacaaaatattatttaatcacacatggttaaagatgttttaagagagtgtagtttacaaatttaatgaaatgcataccaataatatttttcatttgtaaaaattcttgctatatttaaaagcattttgttaaactgttttgatctttgtaaccactgtgtgctatagaaagtatagatattgttaccaaaacatgcccagtaaaagaactgagacatacaaggttatctgactcggccaaagtcacacagctaacatacagaaatcaagaattcaacaacaggactaagttgttatttaataataatttgaggaatgattaaaaaacagtatacatagagtacaatggtttgagggtttaactgctatgcatcccctcttcccccagagaggagatgaaactatgaaattcagaaatgtaaaggcagttactgagttttaagtatgaaaagcacagattcttaggagatcatgggccaagaataacatggttacctttaagattaagagtataaaatgatttccttggctgaaggtataatagtaaggagcagagtttagagggtctagatatcagtgggtccctgggaggagcctggtggccactccctaattcagttcctggggactggggcataggggaataataaactctcagacgggttcgagaatacaagggcagaaacgatctgtgtcctgactcaggcggagctgaggatgtcgacaaagtattccctgtgacctcacagtgctggaggataagggacgtctctgtgatgcacttagtctgacagcctaaaagataatcttgccaagttccctgcaactggaacaccgtgggagcaggagaacatttcctacccacccgagaggggcacagagcatgccagacccaaaaatgtctagtgactgggactaagtgagacacaacagtcatgcgcatggacgagcgggtggcccacccatgcctgtgtgcctccagatccgctccttcactcctctgtctaatctgtatcctatggagcttgatgcttacggctgggcagtgtgtggcaagagcttgagatacaactgaaaatcatcctgaaatgggggcttctcagcagaatccaag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]