2024-04-19 16:16:18, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_011726281 6513 bp mRNA linear PRI 24-APR-2018 DEFINITION PREDICTED: Macaca nemestrina claudin 17 (CLDN17), mRNA. ACCESSION XM_011726281 VERSION XM_011726281.1 DBLINK BioProject: PRJNA279145 KEYWORDS RefSeq. SOURCE Macaca nemestrina (pig-tailed macaque) ORGANISM Macaca nemestrina Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_012015021.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Macaca nemestrina Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6513 /organism="Macaca nemestrina" /mol_type="mRNA" /isolate="M95218" /db_xref="taxon:9545" /chromosome="Unknown" /sex="female" /tissue_type="blood" gene 1..6513 /gene="CLDN17" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns" /db_xref="GeneID:105472757" CDS 1966..2640 /gene="CLDN17" /codon_start=1 /product="claudin-17" /protein_id="XP_011724583.1" /db_xref="GeneID:105472757" /translation="
MAFYPLQIAGLVLGFLGMVGTLATTLLPQWRVSAFVGSNIIVFERLWEGLWMNCIRQARARLQCKFYSSLLALPPVLETARALMCVAVALSLIALLIGICGMKQVQCTGSNERAKAYLLGTSGVLFILTGIFVLIPVSWTANVIIRDFYNPAVHIGQKRELGAALFLGWASAAVLFIGGGLLCGFCCCNRKKQRYRYPVPGHCVPHTDKRRNMKMPSNTSTSYV"
misc_feature 1981..2511 /gene="CLDN17" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN
gcctcagatttttatatttaaacaaacgtatgttttcacttataatacagacaatatgctctagctgatgagaaagcaaataattggaaaaaaattttggaaacttccaggacaaaatgagcatagcaatacatctgagatagaatgaggaagaggaactagaatgaggaagaggaactagaatgaggaagaagacccagaagtaacaagtcagagtaatgctggaaaatcctgtcagggagggaatggttaagcctatgtctcagtaaccatgaacaaagggccaaggaaacccttcatccaatctggtgttgggaaactgttaacaacacagaagtcatctgtttgctcaatgattcacattccttagagagggagttctcagaccaatcatcttgaaaactcaatggttttcacattcatgaagtcagtgaatggactctaaatctggttgccattggaccacccattaaatctttggcctgtaactgattgagatggaggacattttgcaaaccgtgatgtctcccacctggagtgtggttggcgttcttgctttggagtcattttcatctttacaatagatcccttgccagtgggatgtaaaaggaaaaggaaaaaggtccacttttcccacacgaagccccccactgcctctagggagtggcaggaaagtggcagtcaaaagttacaacttgacttaaattttgaaataatctcaactgaatttttcttcctttgaaaaccatttgaaaaactgtagatagtgccacatttccactaggtttagtcccacttatatgaaaagattgaaaaagtaatctctccttcctatttttgaatcagactagacagagaaagtaagcatagtgagttacagacctgggcttgttcccggatcaggtgccacatggcttgtctcagccaaacactttgcacaccttccgttcatctggcaaataagggtgttaagtttgatggccttgacgataacttccagcactaaaatgttctctagcgtctaaatttcaagtgactgcatagccaatttcaagggccacttttatattgttccataaaaatgaaaggtacgtgtttggccttaataaatgtgatctatttcaagctgccattgaagaaacactgaatgaaagtttccatactaaacattacttaacagagagaggtgttacttaacagttaaagtaataattaacagttcattcaaattaattataaggaatacttctctgttttcttcttttctggatcttaagagtaaactatgaaatgtgaatttcttgcttagggctcctcctaagtatcaatagttttcgtgtgtcttgaaactaatacgtaaacatttctgcatatcgaggtatctttattaaagccagaattgattaccatcttaaggaaaagtggcttacactagaataaagtaatagtttaaagtccaaaatgttttttaattactctccaataaactgacaaggttttggcattgtcttcagctgtgccttaacacatatatttatacttttatatcagagtgattttttacacaggaagtttcagctctgtaattagcaattcacaatggagactttgacacttaattacagcattgctaagacaataataatgtgagaaatcctaaagctgaatgcagtatttcttgacacacccctagctaccttcttattggctgggaaacaattatatatgactagtaaataatccatagagaaatgaatgtatatgaaaaaaggcaacatgcatttacaacaggtacttctagttaggccaagttcagtcacagccactgatttggactaaaatgatatgggcagcagccaaggagaacatcatcaaagacttctctagactcaagagccttccacgttctacatcttgagcatcttctaccactccgaattggactagtcttcaaagtaaaaggcaatggcattttatcccttgcaaattgctgggctggttcttgggttccttggcatggtggggactcttgccacgacgcttctgcctcagtggagagtatcagcttttgttggcagcaacattattgtctttgagaggctctgggaagggctctggatgaactgcatccgacaagccagggcccggttgcaatgcaagttctatagttcattgttggctcttccgcctgtcctggaaacagcccgggcactcatgtgtgtggctgttgctctctccttgatcgccctacttattggcatctgtggcatgaagcaggtccagtgcacgggctctaatgagagggccaaagcatatcttctgggaacttcaggagtcctcttcatcctgacgggcatcttcgttctgattccggtgagctggacagccaatgtaatcatcagagatttctacaacccagctgtccacataggtcagaaacgagagctgggagcagcacttttccttggctgggcaagcgctgctgtcctcttcattggaggcggtctgctttgtggattttgctgctgcaacagaaagaagcaaaggtacagatatccagtgcctggccactgtgtgccacacacagataagcgaagaaacatgaaaatgcctagtaatacctccaccagttatgtctaatgcctgcttttggctccaagtgtggactatggtcaatgtttgttataaagtcctgctagaaactgtaagtatgtgaggcaggagaacttgctttatgtctagatttaaattgatatgaaagtttcaatttgttactggtaggaaaacttggacattctgacttcaggtgtattaaatgcatttactattgttggactcaatcgctgttccaatgttcatattctaaatgtaagtatacccataatcattatcaagtgcacaatgatggactactagtttttgaccatcatattttatctgataagaatcaaaatttgaaatcgatattctataacaataaaacatatacctattctaaaatgtaagctattatttttcctctacattgtttcttgtactacacactaacaactaaatgatgacctttttcaaaagattatcatggaaaattgtagatatcaaacaataatttttagttgaaaatgtcaaaacatgaaaatgtccatctaatgaaagactttgttcctttaggaactcacacaattacaattagacactttagtgaaaagggagctctgatttatcttaggacaattaagaagacagattttaaggtctctaatttatacagttaaacttgcctagaatcactgtttaaaggaaaataatttataaatgaaaaataatatttttcatagcctatcatctgtacttcaagcaaacggaagcatctatcttgataagacacatcaatggaaggctattaacactcaattcttatctagaggttatacggtcccaattagagaattgcagttggggcattgaagggaatggtttctattctttgttttattctttagtcattgcacaggtacaaacatgctaagcaattcgaagaattaaggttatgattcagacaagtagtcaggctaagttaaataccttttttgtattctctactaaacaaataggtatggtgaaaatatttttgttttgcttgaattacatgcacaattttctcaatacttcatttcccatgtgtacatatcaatatcagggttaaaagtgtggtggatcatgtggggtaagagtgagtagggagtgtttatgaggcaagaccacctgtatgggttgcttctgaatagcttttacatcttgtgaatcaatcaatttttgtatgttcagttttaactcttcaaatattgtgcttattttgtaataaaaatgtatttaattttgagtatataattgcaatgagaagcctgaatttgctcaccaaatatttattgcatcttcatccttattataatgaaataaaatagattacaatgatgttgatatatttagctgtggggtcaattagaataaatttctgtcctcacaagatcacctagtaactctgaaacattaaatcagggataactcaagcctggatgttaatatccaaccttcactccattctacaaaccaccagcaagatgtcagtaggtgaagcccctggtaatataaaactgtatttaaaacactggtaatattaaatgataagatcacacaagtataaatatcttcaaagattagcaataaaaataagaaaaacagtgattaagatgaatttttcttaagattgattttttttaatcagacttgattcagaaaggcctaatattgggtatgttggaaaagagtcatttttcttttacagtcaaataagtaagccatctagacaagcaagatatatacctaaaagttgtcatagaatcatttttcttacctttttgctcacctagaagtaattagctttacaagaatggattcctcagcctaaacggggaagtatgttattctgctagccagtaggtcaaagagtaaaaaaacacttggtgcaattataagataatattagctattgaatatgtggcaacatttcaggaactacgttttttgttgcttgcccttccattaatcaatgtgtagctttagaaagattatttttccctgttccactctgctgtagtatttttccaattacaccaaaaataaattttactaattttccatgaacttaaagatgcatgaagagtgcatatttcctactacaaacccaagcgtgcacgacatttatctttattttctaaaatataattgaagttcaacttcttgagtacttgctcacatattatacagttgttaggatcttatgcagggctaaacagtgttccatggtggtttctgggatgagtccatgaccatcagtccctgcaggtgtctgagaagatgtctattttatctgcccacagagtctttgtgggcttcttagctctgtcgattctgtcatacttggccattaattgtcttgactcttgttctgggttgcttgaatcagtagatttcaaccctggcggtatgttagaatcgcttagggaactttgaaaaataccagtatagctggtgttgagatgatccatggcaccattttccagagtcttatccgggaacctgacctgctatccacaagcagtggtagagaaaatggctacttcccaataaaatgtttttaatgtcacctctgtaacccttcttcttcttccccactgtcaaaaaccttgtacaatttcataaaggttttcagaagcaaaatgcataggttgcttttgccttccatttttctacatactcagtgaaatgctttgctgaccaccttctggaatggggaccaaagcaaagggggaaaatgtaaggaggggaaatagttaacgtcacaaaatattatttaatcacacatggttaaagatgttttaagagagtgtagtttacaaatttaatgaaatgcataccaataatatttttcatttgtaaaaattcttgctatatttaaaagcattttgttaaactgttttgatctttgtaaccactgtgtgctatagaaagtatagatattgttaccaaaacatgcccagtaaaagaactgagacatacaaggttatctgactcggccaaagtcacacagctaacatacagaaatcaagaattcaacaacaggactaagttgttatttaataataatttgaggaatgattaaaaaacagtatacatagagtacaatggtttgagggtttaactgctatgcatcccctcttcccccagagaggagatgaaactatgaaattcagaaatgtaaaggcagttactgagttttaagtatgaaaagcacagattcttaggagatcatgggccaagaataacatggttacctttaagattaagagtataaaatgatttccttggctgaaggtataatagtaaggagcagagtttagagggtctagatatcagtgggtccctgggaggagcctggtggccactccctaattcagttcctggggactggggcataggggaataataaactctcagacgggttcgagaatacaagggcagaaacgatctgtgtcctgactcaggcggagctgaggatgtcgacaaagtattccctgtgacctcacagtgctggaggataagggacgtctctgtgatgcacttagtctgacagcctaaaagataatcttgccaagttccctgcaactggaacaccgtgggagcaggagaacatttcctacccacccgagaggggcacagagcatgccagacccaaaaatgtctagtgactgggactaagtgagacacaacagtcatgcgcatggacgagcgggtggcccacccatgcctgtgtgcctccagatccgctccttcactcctctgtctaatctgtatcctatggagcttgatgcttacggctgggcagtgtgtggcaagagcttgagatacaactgaaaatcatcctgaaatgggggcttctcagcagaatccaag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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