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2024-04-20 03:32:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_011652654            3459 bp    mRNA    linear   PLN 17-DEC-2019
DEFINITION  PREDICTED: Cucumis sativus protein argonaute 10 (LOC101221352),
            transcript variant X2, mRNA.
ACCESSION   XM_011652654
VERSION     XM_011652654.2
DBLINK      BioProject: PRJNA182750
KEYWORDS    RefSeq.
SOURCE      Cucumis sativus (cucumber)
  ORGANISM  Cucumis sativus
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae;
            Benincaseae; Cucumis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_026657.2) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 17, 2019 this sequence version replaced XM_011652654.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Cucumis sativus Annotation Release
                                           102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3459
                     /organism="Cucumis sativus"
                     /mol_type="mRNA"
                     /cultivar="9930"
                     /db_xref="taxon:3659"
                     /chromosome="3"
                     /tissue_type="leaf"
     gene            1..3459
                     /gene="LOC101221352"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 96 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:101221352"
     CDS             505..3459
                     /gene="LOC101221352"
                     /codon_start=1
                     /product="protein argonaute 10"
                     /protein_id="XP_011650956.1"
                     /db_xref="GeneID:101221352"
                     /translation="
MPVRQMKESSEQHLVIKTHLQNTVQKAPKSTQNGKGPPNLEHQNIKFRNPSSPPSKNRGRRRSRGGRKSDQGDVFMRPSSRPCTVARKPDEPEFNAGAMVASTNPNGGIISGMQMGFRNSSKSLSFAPRPGFGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMAELVRLYRESDLGKRLPAYDGRKSLYTAGELPFVWKEFTIKLVDEEDGVSGPKREREYKVLIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSSKRYCPIGRSFFSPDIRSPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVLEFVAQLLGKDVLSRPLSDSDRVKIKKALRGVKVEVTHRGNVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHAHLPCLQVGNQKKANYLPMEACKIVGGQRYTKRLNEKQITALLKVTCQRPRDRENDILQTVQHNAYDNDPYAKEFGIKISEKLASVEARILPPPWLKYHDTGKEKDCLPQVGQWNMMNKKMINGMTVNRWACINFSRSVQESVARGFCSELAQMCQVSGMEFNPEPVIPIYNARPEQVEKALKHVYHASMNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNYRDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMQENGSAGRSAKSTRVTGECGVRPLPALKENVKRVMFYC"
     misc_feature    889..3456
                     /gene="LOC101221352"
                     /note="protein argonaute; Provisional; Region: PLN03202"
                     /db_xref="CDD:215631"
ORIGIN      
ttcttcctcttctttactgttacttcttgtgggcattcaatggggcctgccttttatttttttacatcattaaatctttgggtattggatggatagtgagtttactacccttttcaatgtttattctttgtctttggatttgttcttgatttttgttttcttctggatggttttattctctgtctctgccacttccctaagttccatatcttcctcttccttttaataccatttttctcttcttttgtatatactcctcttgcgtttttatctgtttgggtttacccatcatccccatcgagattttcgtttctaatagccagacaacactagtaaatagcaggatgacgtcttgaatccgtgaagaagagggaaaatgagttcagagtaaacgtgactgtgaagaaacttcatgttcaccattttgtgagcctttaagctcatttccaaacgagttcttgtaccattgccagtctattttccagacagtaaaagaaacccaccatgccagtacggcaaatgaaagagagctccgagcagcaccttgtaatcaaaacccacttgcagaacactgttcaaaaagctccaaaatcaacccaaaatggcaaaggtccgccgaatctggaacaccagaacatcaaatttcgaaacccctcttcccctccgagtaaaaacaggggtcggagaaggagcagaggtggtcggaaatccgatcagggagatgtgtttatgaggcccagttctcggccctgcacggtggcacgtaaacccgatgaacctgagtttaacgccggagctatggtggcgagtactaatccaaatggtggaatcattagtgggatgcaaatgggttttcgtaattcaagcaagtctttgagttttgccccaagacctggatttggtcaagttggaacaaagtgtattgtaaaagcaaaccatttctttgcagagttaccagacaaagatttgaatcaatatgatgttacaattactcctgaagtggcatcaagaactgtgaacagagccatcatggctgaattggtgagattatacagagaatctgatttgggaaaaagattaccagcttatgatggcagaaagagtctgtatacagctggtgagcttccttttgtatggaaagagtttaccatcaagcttgtggatgaagaagatggagtcagtggtcccaagagggagagggaatataaagtacttattaagttcgttgcacgtgcaaatttacaccatctgggtcagtttctggcgggcaagcgtgctgatgctccacaagaagctcttcagatactggacattgtattgagagagctttcatccaaaaggtactgtcctatagggagatctttcttttctcctgatattagatcacctcagcggctcggtgatgggctagaatcatggtgtggattttatcagagtattagacctactcaaatgggactgtctctgaacatagatatggcttcagctgcgttcattgagcctctccctgtccttgagtttgttgctcagcttctagggaaagatgttttgtcacggccactgtccgactccgatcgagtaaagattaaaaaggctctgagaggggtgaaagttgaagtaacacaccgtggaaatgttaggcggaagtatcgagtttcgggtctgacatcacagcctacaagagaattagtatttcctgttgatgacaactcaaccatgaagtcagttgttgaatacttccaggagatgtatggcttcaccattcagcatgcacatctcccttgccttcaagtaggaaaccagaagaaggcaaattatttgccaatggaggcctgcaaaattgtgggggggcaaagatatacaaagagattgaatgaaaagcaaataacagcacttctaaaagtcacgtgtcaaagacctagggatcgagaaaacgacattttgcagactgtccaacataacgcttatgacaatgatccttatgctaaagagtttgggattaaaatcagtgaaaaattggcttctgttgaagctagaattcttcctcctccatggctaaaatatcatgatactggtaaagagaaggattgtttgcctcaagtgggtcaatggaatatgatgaacaagaaaatgattaatggaatgactgttaaccggtgggcatgtatcaacttctctaggagcgtgcaagagagcgtagctcgtgggttttgttctgaacttgctcagatgtgtcaagtgtctggaatggaattcaatccagaaccagttattccaatatacaatgcaaggccagaacaggtagagaaagctttgaagcatgtgtaccatgcttccatgaacaagactaaaggaaaagagttggagttattattagctattttacctgacaataacgggtcgctttatggtgatcttaagcgaatttgtgaaactgatcttggtttaatatcacaatgctgtcttacaaagcacgtgttcaagataagcaagcaataccttgctaatgtgtcactgaagatcaatgtcaagatgggtggaagaaacaccgttcttctagatgctatcagctgcaggataccacttgtgagtgacataccaacaattatatttggagcagacgtgacccatccagagaatggcgaagattccagcccttcaatagctgctgtagtagcctctcaggattggcctgaagtgacaaaatatgcagggctagtatgtgctcaagctcatagacaagaacttatacaagacttgtacaaaacttggcaggatcctgtccgtggcactgtcagtggtggcatgatcagggatcttctgatttcgtttaggaaagcaacagggcagaagcctctcaggataatattttacagggacggcgtgagcgaaggacaattttatcaagtattactttatgagttggatgcaatcaggaaggcatgtgcttctttagaaccgaattaccaaccacctgtaacattcattgtcgtacaaaagcgacaccacacccgattgtttgccaacaactatagagatagaagtagcacagacaagagtgggaacattttacctggaactgtagtcgactccaaaatatgccacccaacagaatttgatttctatctctgtagtcatgctggaattcagggaacgagtcggccagctcactaccatgttctttgggatgaaaacaatttcactgcagatggaattcagtcgttaacaaacaatctttgctacacgtatgcaagatgtacacgttcagtttctgtcgtccctccagcatactatgcacatttagctgcattccgagctcgattctacatggaaccggagatgcaggagaatggctcagctggtcgttcggccaagagtacacgtgtcaccggagaatgtggggttcgtcctttgccagctctaaaagaaaacgtgaagagagtaatgttttactgttag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]