2024-04-19 14:12:26, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_011609285 6380 bp mRNA linear VRT 05-JUL-2019 DEFINITION PREDICTED: Takifugu rubripes argonaute RISC component 4 (LOC101078091), transcript variant X2, mRNA. ACCESSION XM_011609285 VERSION XM_011609285.2 DBLINK BioProject: PRJNA543527 KEYWORDS RefSeq. SOURCE Takifugu rubripes (Fugu rubripes) ORGANISM Takifugu rubripes Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_042296.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 5, 2019 this sequence version replaced XM_011609285.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Takifugu rubripes Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6380 /organism="Takifugu rubripes" /mol_type="mRNA" /db_xref="taxon:31033" /chromosome="12" gene 1..6380 /gene="LOC101078091" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 41 samples with support for all annotated introns" /db_xref="GeneID:101078091" CDS 196..2820 /gene="LOC101078091" /codon_start=1 /product="protein argonaute-4 isoform X2" /protein_id="XP_011607587.1" /db_xref="GeneID:101078091" /translation="
MEALGPGPPAPTSLFQPPRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYEIDIKPEKRPRRVNREVVDTMVRHFKMQIFGDRQPGYDGKKNMYTAHPLPIGRDRVDLEVTLPGEGKDQTFKVSLQWVSVVSLQMLQEALSGHLNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPVIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNDMTEVTGRVLPAPMLQYGGRVSTDTGRDCGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMSYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQDMSQEQLFSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCSDKAERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHYDTQHTMYFA"
misc_feature 277..666 /gene="LOC101078091" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 697..849 /gene="LOC101078091" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 850..1212 /gene="LOC101078091" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1006..1008,1051..1053,1093..1095,1105..1107, 1159..1161,1180..1182,1186..1188) /gene="LOC101078091" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1351..2691 /gene="LOC101078091" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1795..1797,1807..1809,1843..1854,1861..1863, 1885..1887,1894..1896,1906..1908,1918..1920) /gene="LOC101078091" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1999..2001,2005..2007,2245..2247,2659..2661) /gene="LOC101078091" /note="active site" /db_xref="CDD:240015" ORIGIN
acaaatcctcagtaggagcaggagcagcagcggtagtttgggtcagtcagtcagtccagtcggcaggcagccacgcaactgtctgtattccttcttcttaaattagccactttaagcttcgagataccgcccccaatttcagcgtcggtacggagccgccaggccgggacagagacggagagcgaggcctcggccatggaagcgctcggacctggccctcctgccccgacctctctgtttcagcctccacgccgtcccggcctcggcacagtgggaaaacccatccggctccttgccaatcacttccaggtgcagattcccaagattgatgtctatcattatgagatcgacatcaagcctgagaaacggcctcggagggtcaacagggaagtggtggacaccatggtgcggcacttcaagatgcagatctttggagaccgacagcctggttatgatgggaagaagaacatgtacacagcacacccactgccaattggaagagacagggtggatctggaggtgactcttcctggggaggggaaagatcagacgttcaaggtgtctctgcagtgggtgtctgtggtcagcctccagatgctgcaggaagctctctcgggtcacctaaacgaggtccctgaagattctgttcaggctctggacgtcatcacacgacacctaccttccatgaggtatactcctgtgggccgctcttttttctcccctccagagggctattaccatcctcttgggggaggcagagaagtgtggtttggtttccatcaatccgtccgtcctgcgatgtggaacatgatgctcaacattgatgtgtcagcaacagccttctaccgtgctcaacctgtgatcgagttcatgtgcgaggtgctggatatacagaatattaatgaacagaccaaaccgctgacagactcccagcgcgtcaaattcaccaaggagataagagggttgaaagtggaggtcacacactgtgggcaaatgaagaggaagtaccgtgtgtgtaatgtaactcgccgacctgccagccatcaaacttttcccttacagcttgaaaatggccaagccatggagtgcactgtagctcagtatttcaagcagaagtacaatctgcagctcaagtatccacatttaccctgtctgcaagtaggacaagaacaaaagcacacgtaccttcccctggaggtctgtaacatcgtagcaggtcagcgctgcatcaagaaactgacagacaaccagacgtccaccatgatcaaagctacagcccgttcagcccccgaccgacaggaggagatcagccgactggtcaaaagtaacagcatggtggggggtccagacccgtacctaaaagagtttggcattgtggtgcacaatgacatgactgaagtgacgggacgtgttctcccagcacccatgctgcagtatgggggccgggtgagtacagacacagggagggactgtggcaggaacaaaacggtggcaacgcccaaccagggcgtttgggacatgagagggaagcagttctacgctggcatagagatcaaggtctgggctgtggcctgctttgctccacagaaacaatgccgagaggatctactcaagagtttcactgaccagcttcgaaagatctccaaggacgccgggatgccgatccagggtcagccatgtttctgtaaatacgcccagggagccgacagcgtggagcccatgttcaaacacctcaagatgtcctacgttgggctacagctgattgtagtcatcctcccagggaaaacgccagtctatgctgaggtgaagcgagtgggcgacaccctgctgggcatggccacgcagtgtgtgcaggtgaagaacgtagtgaagacgtcccctcagaccctgtccaacctgtgtctgaagatcaatgccaaactgggcggcatcaacaatgtcctggtgccccatcagaggccctcggtgttccagcagcctgtcatcttcctgggggctgatgttactcaccctccagctggtgatggcaagaagccctccatcgcagcagtagtgggcagcatggacggtcaccccagtcgctactgcgccacggttcgggtccagacgtcgaggcaagacatgtcccaggagcagctcttcagccaggaggtcattcaagatctgaccaacatggtgcgggagctgctcattcagttctacaagtccacccgctttaagcccacacggatcatctattaccgcggtggagtgtcggaggggcaaatgaagcaggttgcttggccagagctaatagccatcaggaaggcctgcatcagtctggaggaggactaccggccgggcatcacctacatcgtggttcagaaacgtcaccacacgcgtctcttctgttctgacaaagccgagagggttgggaagagtggaaatgttccagcaggcaccacagtcgacagcaccatcacacacccgtccgagtttgacttctacttgtgcagccatgcagggattcagggaaccagtcgtccctcccactaccacgtcctttgggatgacaactgtttcaccgccgatgagctgcagctcctcacctaccagctgtgccacacttacgtccgctgcactcgctccgtctccatcccggcgccggcgtactacgccaggctggtggctttccgagcacgctaccacctggtggacaaagatcacgacagtgctgaaggcagccacgtgtctggtcagagcaacggccgtgacccccaggctttagccaaggcggttcagatccactatgatactcagcacaccatgtacttcgcctgaactagtgagcacatcgacgatccacccgcagctcctcctcctttctttttctttttcaagtctgttgccagtctctctgcttgtagtctctttacacttgatcttattttctaaatctgcacccgagcggcactcggatggtggggaaacctgctgtctcctgatgtccagcaggtttttgtattaaggaacaaccaaccaaccagcgttcccactcgagctgcctttcaaaccagcaatccagtgctgtgacaccagcgaggtgtttccagtacacaaaagaagaaagaaaaaaccaagttgagccattattttccttattttctatttgaatgtctgcactcttgtgttgtaagatacactgagcgagggagtgatgtgacacggtgtgtcagcacagctctttagctctcccagctaagcaggactcttatctacttttacctcaaagcccgtttgggcaaaatctgtcacaaggtctcgggtttattgggtggtggggagggaactctaccagaacagagatggaggggcatcgaccttttgagaatgagagagagatatatatctatatacatatattttttccttttaatgagtgtgttttaccttttctcctttgccgtcttttacaattaaggtgacctggttgtcatgcccacgactactttccttcaacgttggtgatgaaaatgtagtctgtgtgtgagaatgtgtctatttgtatatacatgtactgctgtaagagtgtgtgtgtgtgtgtgtgtgtgtgtgtttcatggcaggccactgaattgtaaagggaaatcacggggataactgctgtaaatgcctcagatttgttttttatatccactcatacagtacatataagcatatatttacatctataaaacaactttgagacgtatgacttaaacaggcctcctgaagaccagcgtgtgggtatttgtagctttcctgggtcacttaataaacatttggtttgaattgggtttgaatcgttggctggcctgctgctggagccggatgggacgtgcaccttcggtagggggtggctttgttcgtgcctggtaacatctttgaatccccagaaacaaaagtgatggaagcattttcggtgggaggtgcagtcatgtctgatatgtagcattagtaaccagtttgggccctgactggctcagctttggggcccgttgattggctgaaggcattaaaccgtacggttgcgccacctctgtgcatgaaaggcaggatgttgtttttctttggacctgattatcagagagtttttgtacagttactcggctgcgtttatttttttttttgcagggccagaaaccagtaagcttttttcttttcccctctcccatcttaataattcattgcactgacccgggatgcaggcgagcaacagagggcactctcaatctcttgtacctttatgcatttatacatacgaatcaacaagtcagatttgtaaaagtttaatataagatgttttgtggctatattaaaagctgtcgtttagaaatagtttaccgttgttgttgtttattgttgtcaatgttgttactattgtgatgaaattttacagttggcagcaacgccagttttatattttctagtttgacttcaggaatagttgttgggctgcaggtcgaaggcttcggagctttggagcagatatattttgtagcattttggttaatgtgagatgtagaccccagctaggaggagttcacgcctcctccgacagcttcaaggccactaaaccttagcgggagactctgggtgtttggtggcagctttgatcggatggaaacaatcggggatcgtaatcggaccgaagctgagatcgaggattggtcaaaggtggtcagtgacgtaaaatgagctgaatttttactctttgaaatggtttctatcgctgtatttgaggttatcccatgatgaaattgatgtttttagatttttgacactggatgtagaggtaaacgccctttgaaccgcagtgacacccagtaatgtgcactggtggcggaaatggcgccccctggtgttgcggagatgagaagcagtcgacgtgcacgcctcgtcaggggggcagctcagtggaagcctttttgtaataaaccgcccgtaaagcagcaggtttactatgaaatggtgtgagcgcctgcctgttgaaggcgtgggcgttggcagggttcaggaccgttttttgaaggagggggtgcgctgtgatttgcgggcattgtccaggttttgcatgcaataatttttttggttaaaggagcagatgtttttaaaatgtgcactagttttaccaagccaatgcgggtgtaattggaaagtcacccggcttctaaagggtgaacgttttctaccttccacactgtttgaactccactcggatcagccatcactccccgtttgacaaggttgcagagcaatatgaccccagttctagatttcagatgtggaaatacaaatctcatcatggttgtctactcttgcaattgtgttgtgtgtactcttcctttactttgttctttttagttgatatcatttgcttgtatcaatcagtgggaatgtgcatttggtggaatagatgtataggctctagacaatttccttttaaagtaacaaagtgtagactttgctcacctgcatgccagagtattgtccttttttttaaaaaaaaaaaaaaagaaaaaactttagaaacatatttatcaaagagaagaaagtataaatgcttctttttggggtaaatgttgaatttagtaggactattttaggctagcaatatttgtccagatgcattttaaagattcctacacaaatgtcagtaattctccaagtacactgttattgaggcgaggtgactccgctcttttctgggcgttcacattcaaaacgaggtacctttcttcaaacgtggagcccttcaagagctgactcgcctcgcctttgccaggtttcaacggcgagcatccatttttgtctccttgttcctggttttgtacccacagccacacctcttgatgagggaggcctttgtctcggtggcccctctgctgacctctcacaaatgcacttcctctttgtgtaggggtcccctgtgacatcagcagagcacgcttacctctttctacacctttttatttttttttttaaatgaaaagtccctaattgtttctgtgccccaagtgaatgaaagcatgaattcttttgaaattcctcttcctttgatatattgttatatcttaacagatttgtaattgtgtgttacatatttttagtttcattttgtggttccttttcaggggtttcttaaaactgttttcccccccactagtggtctctgatgcttttgtgactgttttaatggtaacaacaggttctgggggaagggggtgggcatgcccagcccctgttattgctattatgccacatgttcacgtatattttattttttttattttatttttttttagcctgcagggaattcttgtgttaatgtgcaaagtaataaattggtattttaagcctca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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