2024-04-27 04:38:05, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_011264209 2284 bp mRNA linear INV 03-JUL-2018 DEFINITION PREDICTED: Camponotus floridanus flocculation protein FLO11 (LOC105255116), transcript variant X1, mRNA. ACCESSION XM_011264209 VERSION XM_011264209.3 DBLINK BioProject: PRJNA476946 KEYWORDS RefSeq. SOURCE Camponotus floridanus (Florida carpenter ant) ORGANISM Camponotus floridanus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Formicinae; Camponotus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_020229325.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 3, 2018 this sequence version replaced XM_011264209.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Camponotus floridanus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2284 /organism="Camponotus floridanus" /mol_type="mRNA" /strain="SB8" /db_xref="taxon:104421" /chromosome="Unknown" /sex="female" /tissue_type="whole body" /dev_stage="worker" gene 1..2284 /gene="LOC105255116" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:105255116" CDS 316..1650 /gene="LOC105255116" /codon_start=1 /product="flocculation protein FLO11" /protein_id="XP_011262511.3" /db_xref="GeneID:105255116" /translation="
MNMTKHPLYETSTDSTENIITSTSIETDSTEDITTSTSIETDSTEDITTSTSIETDSTEDITSTSIETDSTEHITTSTSIETDSTEDTNDTKSSASTNSTDDDDTASFTFINFHPHISDVTSADNQAETLKVEFEELRRNDDNLHKFTEMAIFRNHYMFPTVPNTVLSKQKNTLKSVLNQKSSKTNEDIAISTKQKLEKKDHISKNKHCKKPQSLVLWRPLAPPIQDLEEKSRIYKLLMKHVFTRESRLIFNYKRERRSSLPFTPIPKLLAICPPPPESTTSELLNVIEKPNTSKSDINLDSQSSKTCIFTKQAKIKTPKDSTNESNSSTDDESYIDTEQSTHSATHTDDDIRNLELSDNEEETIEESPPECSECALILVVSLLFVALTLIVSFSITALFFAYVFPFDPLGLSLGQNLEHTDTFTSVIVEMEEKILMKPYKKRS"
misc_feature 370..>657 /gene="LOC105255116" /note="amidase domain-containing protein; Region: PRK08581" /db_xref="CDD:236304" ORIGIN
ctagcacccatgaaacaaagattgtaccgtaagctagaagcatcggaatcgaacccgacttagttgagctacgtttcactttgtgatcgcaattcgcaacattcttgaacattatttgtctttgtttaacatttaatgaacaaagttattttacaagagtattgagagatcatcaaacaaaatatagtcttaacagtgttgcaaaaaggaggaacgaatgaactcggatttttggtgaatacgactgctagcacatggtttcagtagtaccatcacgttaaagaaaacagcaaatattgcgtatcatccacattcatgaatatgacgaaacatccactgtatgaaacatccacggattcaacggaaaatataataacatccacatccatagaaacggattcaacggaagatataacaacatctacatccatagaaacagattcaacggaagatataacaacatccacatccatagaaacggattcaacggaagatataacatccacatccatagaaacggattcaacggaacatataacaacatccacatccatagaaacggattcaacggaagatactaatgatacgaaatcatccgcatctacaaattcaacagatgatgacgacactgcatcattcacattcataaatttccatccacacatttccgatgtgacatctgcagataatcaagcagaaactttaaaagtagagtttgaagaacttagaagaaatgatgacaacttacataaattcactgaaatggcaatttttagaaatcattatatgtttccaactgtgccgaacactgttctgagcaagcagaagaatacattaaaatctgtccttaatcagaaatcttccaaaacaaacgaggatattgcgatttctacgaaacaaaagcttgaaaaaaaagatcatataagtaaaaacaaacattgcaagaagcctcaatctcttgtcttatggagaccgcttgctccaccgattcaggatttggaggaaaaatcgagaatctacaaattgttgatgaaacatgtattcacaagagaatcacgtttaatattcaattataaacgcgaaagaagaagcagcttaccgtttacacctattccgaaactgttggccatatgtcctcctccaccggaatcaaccacttcagaattattaaatgtaatcgagaaacctaatacatcaaagtctgacattaacctagactctcaatcttctaaaacatgtatttttacgaaacaagcaaaaataaaaacgccaaaagattctacgaacgagagcaatagctctacggatgatgaatcgtatatcgatacagagcaaagtacgcattcagcaacacatactgatgatgatataagaaatcttgagttatcagataatgaagaagagactatcgaggaatcgcctcctgagtgttctgagtgtgcactaatcctggtcgtatcacttttgtttgttgcactaaccctgatcgtatcattttcgattactgcactattttttgcgtacgtatttccgtttgatcctcttgggctttctctaggtcagaatcttgagcacactgatacttttacctctgttattgtcgaaatggaagaaaagatactgatgaaaccatacaagaaaagatcatgatgaaaccatacaagctttagctgaatatcttcagcaagatacacctcttttaaaagtagtagctctcatcaataatgcaagcgtcgataaatcatatacaatagacatcataagaaacaaatttgccggaagaagcggaaacgaacgtgtaagtttgtattcgagctttactgttttagaaaatttgagcctaaaaagtttcaaagtggtcatagattttgtgaacatgtgtcaaagagtatatccacgtgatcagcaagttaccatattagcggattttaaaattgatgacgatttgacacatatagacttaaatcgagctataaacacacttaaagaaactttaattaaagcaaatattaatttcaaaattcttctttacaaacctttaaatgaagaagctttagaaaaatacattcaaaatatggcagaaaatattggagaatcattctctcaaattcagatcgatgatattaaacgagatttgatagaaggcaattgcaaaaaagcctatggtcattgctatggttagtagaaaataaaaatcgtacattgctttcaagaagataaaactgcaaaaattattgtgtattgtgtctgataaatgtccaataaaaaacgatattttttcgta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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