2024-04-25 21:01:35, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_010711814 4730 bp mRNA linear VRT 18-NOV-2019 DEFINITION PREDICTED: Meleagris gallopavo NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X2, mRNA. ACCESSION XM_010711814 VERSION XM_010711814.3 DBLINK BioProject: PRJNA62397 KEYWORDS RefSeq. SOURCE Meleagris gallopavo (turkey) ORGANISM Meleagris gallopavo Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_015015.2) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Nov 18, 2019 this sequence version replaced XM_010711814.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Meleagris gallopavo Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4730 /organism="Meleagris gallopavo" /mol_type="mRNA" /isolate="NT-WF06-2002-E0010" /db_xref="taxon:9103" /chromosome="5" /sex="female" /tissue_type="blood" /breed="Aviagen turkey brand Nicholas breeding stock" /note="donated by Nicholas Turkey Breeding Farms" gene 1..4730 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 112 samples with support for all annotated introns" /db_xref="GeneID:100539300" CDS 635..4114 /gene="NRDE2" /codon_start=1 /product="nuclear exosome regulator NRDE2 isoform X2" /protein_id="XP_010710116.1" /db_xref="GeneID:100539300" /translation="
MALFPAFAGAPEPGEAPAGSSEGSRKELDWLSNPSFSTEDALLLHQRTAEAANLTPEKSPLIRKTSRSDLSGESDTDESLKKSSKKRKKKKKKHHHYKTKKKAKGDSSSSESELDTKRIKDKAATNLDDKTSNLTSNRFVWLDDVQAFTAETFRIDKKSDPANWAYKSLYRGDIARYKRRGESCLGIDAKKQCISWDGTTSEKKQLQRRPERYFSKNNVKSLNTDGIPVCNRSSPSGPAAFIPVFHVETSDPSDTTEVNPLGIYDPSTTEWLQGKGYKGEEQEPVNPQQAFQDSGINVNPILMTKVEEHNKKVRENPRDIQAWMNFVSFQDELMRGPSPYASMGEQEVRRKSLKLILEKKLAILERAIESNPSNVDLKLARLNVCTEFWESPAVIKEWQKLIFIHPNNPELWKKYLLFCQSQFSTFSVSKINSLYGKCLTTLAAVQDGSMVSHPPLPGTEEAMLAIFIQQCHFLRQAGHSEKAVSLFQALIDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRIGEKGARGWRAWMHQQEKGGWVAVDNPDDDDEEEMDEDEEIKDKTLPKWHIWMDIEYSRESRHWLPWRPDKTKNQAEEDCEDPERQVLFDDLGPSLIQLSNPDIQHQLLYSFLQFLGVPCISKLFPPNLYIAMDENNIFDNVLSDEKPLTSTDTPLSGFNSIGHMDTMLRRRHHIGHCKDGEEFIQNVFHVLSPLFSGKEKSNLSICWLQYEISKVVQCIQTKKKKKLKAQGRKSKKLAKNLLKAPDNRNNLTLWKLYAYLEWLLGNTDDARKVFDTALCTAGTGGLKSPQLCSLSLLYAQLEVELLQSLEGAVTSRAVHILTKLTESGPYVPYNGQVLSVSVLKARKTYEHALQDYLNKAPVSDQDRASNSNQLVNIVGCYTVFQYLTVGIDAAESVCVQALEKLEASHPQKCENTAETSSIQHFPTALEAVTLLRANLLRFHMKISAYPLSPLREALTGALKWFPSNQALWRAYIQSQRKSHSASKARRFFDGVTRSTNSLEPWLFAIQAEQMRKKLIENVQRADVGEIYTTIPETGLTNRIISLFEHAIQSENGTHCPLLWRMYLNFLVSVGKKEKSKGLFYKAIQSCPWAKVLYMDAVEYFPEQLQETLDLMTEKELRVRVPMEELDLLLEV"
misc_feature 1088..1366 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(1088..1114,1121..1126,1136..1141,1145..1147, 1151..1195,1202..1210,1214..1222,1244..1252,1262..1267, 1271..1276,1283..1303,1322..1333,1343..1366) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1556..2554 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
gataaaaaaaatagatacaagtatcttaatggtgtgtaaaattgtgtggagaagtaaatagggatgcttacatttttcctcacactgcacgcaattcgtaattaaacattctgcccaagaggtcataagaataaaagtgtttgttgttttcccatctcctttatggagggcttgctcattgaagctatttgatatgataagcatctcctccggttagaaaacgtatcaattctgaaagcgggaatagttatttttttcctaaaccactgctaccgccatttgggatggactctccagccatgtagacctgcagtcagtgttccccccagcgttctgcatgagggaaaatggggcggtgggggaaggacagattgcctctgactgtagaagcctcatcccttaatcttccctacgggctggacggcagccccgtcagaagttcggaaaacgcaggacacccgcagcaccgagtctgcctgcctgccttccttcagcaattcccgcgttcccgccgccattttgggagctggggcaggcggactacacctcccagcatacccggcgccgcagcgccatcttgctccgccgctccgcggggcacttcgggcaggtactgctggcgacgagctgggacatggccttgttcccggctttcgccggtgccccagagcccggggaggccccagccggcagcagcgagggctccaggaaagagctggactggcttagtaacccaagcttctctacggaagatgccctgttactgcatcagcgcactgcagaagctgcaaatctcacccctgaaaaatcaccactaataaggaagacttcaagatcagatttatcaggggaaagtgatacagatgagagtctgaaaaagtcaagtaagaaaaggaaaaagaaaaagaaaaagcatcaccactataagacaaaaaagaaagccaagggggactccagtagcagcgaatcagagctggacacgaagcgcatcaaggacaaagctgccacaaatctagatgataaaacatcaaatcttaccagcaaccgctttgtctggctggatgatgtccaggctttcacagcagaaactttcagaatagacaaaaaatcagatcctgcaaactgggcctacaaatccctgtatcgaggggacatcgcaagatacaaaaggagaggagagtcctgtcttggcatagatgcaaagaaacagtgtatatcttgggacggcacaacgtcagaaaagaagcaattgcagaggcgacctgagcgctacttctcaaagaacaacgtgaagagcctgaacacagatgggattcctgtttgcaatagaagttctccatctggcccagctgcgtttataccagttttccacgtggaaaccagtgatccttctgacacaacagaagtaaatcctcttgggatttatgatccatcaactacagagtggctacaaggaaaagggtacaaaggtgaagaacaggagcctgtaaatccgcagcaggcgtttcaagattctgggataaatgttaaccccattctaatgacaaaagtggaagaacataataagaaagtcagagaaaatccaagagacattcaggcttggatgaattttgtttcatttcaggatgaattaatgagaggacctagcccttatgccagtatgggagagcaggaagtaagaagaaaatcactgaagttaatcttggagaagaaactagctattttagagagggcaattgaaagcaatccaagtaacgttgatctgaaactcgccaggctgaatgtttgcacggaattctgggaatcaccagctgtgatcaaagaatggcagaagctaattttcatacatcccaataatccagagctgtggaagaaatatctcctgttctgccaaagtcaattcagtaccttttctgtttcaaaaatcaatagcctctatggaaaatgtttgactaccttggcagctgtacaggatggcagcatggtatcacatcctccactgcctggcacagaggaagctatgcttgctatctttattcagcagtgccactttctgagacaagctggccattctgagaaggcggtgtctttgtttcaggctctgattgacttcaccttctttaaacctgacagcgtaaaagatctgccaacaaagggacaggtggaattctttgagcctttttgggatagtggagaaccacgaattggagaaaaaggagcaagaggctggagagcatggatgcaccaacaagaaaagggtggctgggttgctgttgacaatcctgatgatgatgatgaagaagaaatggatgaggatgaagaaataaaggataaaactctccccaagtggcacatttggatggatattgaatattctcgtgaatcaagacattggttaccttggaggccagacaaaaccaaaaatcaagcagaagaagactgtgaagatccagaaagacaggtattatttgatgatcttgggccatctttaatccagctttctaatccagacattcagcatcaattactgtactcatttttgcaattcctgggagttccatgtataagtaaactctttcctcccaacctctatattgccatggatgaaaataatatctttgacaacgtgctttctgatgaaaagccactgacttctactgatacaccactttctggattcaacagtattggtcatatggacacaatgctaaggaggagacatcacataggccactgtaaagatggagaggagttcatacagaatgtttttcatgttctatctccgctgttttcaggaaaggaaaaatcaaacctgtccatttgttggttacagtatgaaatatcaaaggtagttcagtgtatccaaacaaaaaagaagaagaagctgaaggctcaagggaggaaaagtaaaaaattggccaagaatctccttaaagcacctgacaacagaaataaccttactctctggaaactctacgcctacctggaatggctgcttggaaacactgacgatgctaggaaggtgtttgacacagccctctgcacagcagggacgggaggactgaagagtccccagctgtgcagcctcagtctgctttatgcccagctggaagtggagctactgcaaagtttagaaggagctgttacgtcacgtgctgttcatatattgaccaaattgactgaaagtggaccatacgtaccctacaatggacaagtgttatctgttagtgtcttgaaagctcgtaagacatacgagcatgcactgcaagattatttaaataaggcaccggtttctgatcaggatcgggccagtaattccaatcaactggttaacatagttggctgttacacagtgttccagtatttgactgttggaattgacgctgcagaatcagtatgtgtgcaggctttggaaaagcttgaagcttctcatccacagaaatgtgaaaatactgcagagacttccagcattcagcattttcccactgctcttgaggctgtcacactgctgcgtgcaaatttactcagattccacatgaaaattagtgcttatcctttgagtcctttgcgagaagcactaacaggggccctcaaatggtttcctagcaaccaggctctatggagagcatatattcaaagccagaggaagtctcacagtgctagcaaggcacgaaggtttttcgatggtgtcacaaggtctactaactctttagagccatggctgtttgccatccaagcagagcagatgagaaaaaaactgattgagaatgtccagagggcagatgttggtgaaatatatactactattcctgaaactgggttaacaaataggattatatctctatttgaacacgcgattcagagtgaaaatggtacccactgtcccttgctgtggagaatgtatttgaactttctggtttcagttggaaaaaaagaaaagagtaaaggattgttttataaagccattcaaagctgtccttgggcaaaggtactctacatggacgcagtggaatacttccctgagcagctgcaggagacgctcgatctcatgactgaaaaagaattaagagtgcgggtacctatggaagagctggatctactattagaggtttaaaagaagataaggatgaagaaaatacaaagccggttctaaaactaacacttagaactcttttcaaacaagaactctgttttgtgacttgagtattgtatacttctccccaccccctccccccaagtttttgtacaaattgctaccaaaatggagttctagctgaaagcattccaggatcaagaactgcatttagcccacaaaaatgcacccattcactgaagtagcgctgacttccacaggataccctcttacaaacgtagtcctgttgtacactgcccacatttcttattctattgtttgaagttatatgccatcgagttcagtagagattccatatgcgctaactatagcttggtgagccccacaggaaataaacatctgccccatgggttccccactctcttcctgctggcagacctcagtaatctccttcagtttggtatgcacgtgtctgtaagtaccaagtcactgcgagttacatctgttgtggacagctggtaaaagccaaatcttatcttcaacagacacctgttatggacttgtattggaatgttttgacaaatgacttttaatatgaatatttatgaaatacataccttaatttttataattcaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]