2024-03-29 19:41:03, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_010588803 3357 bp mRNA linear MAM 16-JAN-2018 DEFINITION PREDICTED: Loxodonta africana NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X3, mRNA. ACCESSION XM_010588803 VERSION XM_010588803.2 DBLINK BioProject: PRJNA70973 KEYWORDS RefSeq. SOURCE Loxodonta africana (African savanna elephant) ORGANISM Loxodonta africana Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003573429.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Jan 16, 2018 this sequence version replaced XM_010588803.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Loxodonta africana Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3357 /organism="Loxodonta africana" /mol_type="mRNA" /isolate="ISIS603380" /db_xref="taxon:9785" /chromosome="Unknown" /sex="female" /country="USA: San Diego Zoo, CA" gene 1..3357 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns" /db_xref="GeneID:100659618" CDS 69..3254 /gene="NRDE2" /codon_start=1 /product="protein NRDE2 homolog isoform X2" /protein_id="XP_010587105.1" /db_xref="GeneID:100659618" /translation="
MALFPAFAGVSEAADSGSSRKELDWLSNPSFCVGTIIPPSQQLEEAPNLVPEGPPLTRSPLKSEPSDESDTNKKLKQTSRKKKKEKKKKRRHQHHKKTKRKHGQSSGSTSEPDTDAERDKSSRSNSKRESEKPNQENHAAADIGHRCVWLEDIQAATGETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGAPMEKKNSHKHVERYFTKKNVGLMSIDGAAVSSKTEPPSSEAASFIPVKDSEDVAPSVTTWMNPLGIYDHSTTQWLQGQGPLEQETKLPDSQPDRENAVLKAKVEEFNRKIRENPQDIELWMAFVAFQDEVMRRPGLYALDEGEQEKRKRSLKLTLEKKLAILERAIESNPSSVDLKLAKLKLCTEFWEPATLVKEWQKLIFLHPNNTALWQKYLLFCQSQFSTFSVSKIHNLYGKCLSTLSSVKDGSILSHPVLPGTEEAMFALFLQQCHFLRQAGHSEKAVSLFQAMIDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRAGEKGARGWRAWMHQQERGGWVVINPDEDDDEPEEDDQEIRDKTLPRWQIWLGAERSRDQRHWQPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSRDLQFQLVEAFLQFLGVPSGFAPPVSCLYLAMDENSVFVHRLSDEKPLTCSTPSFAGVGCVGRMDRLGCQRWSRGHNREGEEFIRNIFHLVMPLFSGEEKSRLCFSWLRHETAKVIWCLQTKNKKKLKSQGRNCKKLAKSLLKEPENCSSLCLWRQYAHLEWLLGNTEDARKVFDTALSMVGARELKDAALCELSLLYAELEVELLSDLRGAATSRAVHVLTKLTESGPYGPYSGQVLAVHILKARKAYERVLQDCLDESCIPDPAPTDSFNCLVSLVRCFMLFQYLTMGIDAAVQIYEQVFTKLKGSVSREGTGLEHSGSPRSLASALEAVTLMYTSLLQFHVKVSVYPLTPLREALSEALKLYPANQALWRSYVQIQNKSHSASKTRRFFDAITRSTKSLEPWLFAIEAEKMRKRLVETVQRRWRSTCHNP"
misc_feature 546..836 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(546..572,579..584,594..599,603..605,609..653, 660..668,672..680,702..710,720..725,729..734,741..761, 786..797,807..836) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1002..2000 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
gccgcgcggccggcgcgcgctcggaggcgccatttctgtagaggggagcggcggcgcagtctgcgaacatggcgctgttcccagcctttgcgggtgttagtgaggccgccgacagcgggagctccaggaaagaattagactggctgagcaacccaagcttctgtgttggaaccataataccaccgagccagcagctggaagaagccccaaaccttgttcctgaggggccaccactgaccaggagtcctttgaaatcagagccttcagatgaaagtgacactaacaaaaaactcaaacaaacaagcaggaaaaagaagaaagagaaaaagaagaaaaggagacatcagcaccacaagaaaaccaagagaaaacatgggcagtcgagtggcagcacatctgagccagatactgacgctgaaagggacaaatcttctagaagcaacagtaaaagggaatctgagaaaccaaatcaagaaaatcatgctgctgcagatattggacatcggtgtgtttggctggaggacattcaggctgcgacgggagaaaccttccgaacagataagaaaccagatcctgcaaactgggagtataagtctctctaccggggggatatagcaagatacaagaggaaaggagactcctgcctgggcattaaccctaagaagcagtgtatatcttgggaaggggctcccatggaaaagaagaattcacacaagcatgttgaacgctattttaccaagaagaacgtgggattgatgagcattgatggagctgctgttagcagtaaaaccgaacctccctcatctgaggcggcctcgtttataccagtgaaggactcggaggatgtggctccttccgtcaccacctggatgaaccctctggggatttacgaccattccaccacgcagtggttacaaggacagggccctttggagcaagagacaaagctgccagactcacagccagacagagagaatgctgttctcaaggccaaggtggaggaatttaacaggaagattcgggagaatcctcaggacattgagctgtggatggcatttgtcgcttttcaggacgaggtcatgagaaggccaggcctgtatgcccttgacgaaggagagcaggagaagcgaaagcggtccctgaagctcaccctggagaagaagctggctatcctggagcgggccatcgagagcaacccaagcagcgtcgacctgaaactcgccaagctgaagctctgcacggagttctgggagcccgccactctggtcaaagagtggcagaagctgatattcttgcaccccaacaatacagccctttggcagaagtaccttctattttgccagagtcaatttagcaccttctcggtatcaaaaattcacaatctttatggaaaatgcttgagtactttgtcttccgttaaggacggcagcatcttatctcatcccgtgttgcctggcactgaggaggccatgtttgctctctttcttcagcagtgccactttctgcggcaggctggccactcggagaaggcagtctctttgttccaggccatgattgacttcaccttcttcaaacctgacagtgtgaaagatctgcctaccaaaggacaggtggaattctttgagcccttttgggacagcggcgagccccgggctggggagaagggggcccgaggctggagagcatggatgcaccagcaggagcggggcggctgggtggtcatcaacccagatgaggatgacgatgagccggaagaggatgaccaggaaataagagataagaccctgcccaggtggcagatctggcttggtgctgagcgttcccgagaccagaggcattggcaaccttggcgccctgataagaccaagaagcaaaccgaggaagattgtgaggatccagagaggcaggtgttgtttgatgatattggacagtctctgatcagactctcaagcagagatctccagtttcagctggttgaagccttcctgcagttcttgggtgtgccttctggctttgcgcccccagtctcctgcctttatctggccatggatgaaaacagcgtcttcgttcacagactttctgatgaaaagccattgacttgttctaccccttcctttgccggcgtgggctgtgttggccgcatggaccgcttgggctgtcagcgctggagcagggggcacaaccgagagggcgaggagtttatccgtaacatcttccacctggtgatgcctttgttctcaggcgaggagaagtctcggctctgcttctcctggttacggcacgagacggcaaaggtcatttggtgtctgcaaactaaaaacaagaagaaattaaagtcacaaggaaggaactgcaaaaaactagccaagagtctcctgaaggagccagaaaactgcagtagtctgtgcctctggaggcagtatgcacatctggagtggctgctgggcaatacagaggatgccaggaaggtttttgatacggcactcagcatggtgggagccagggagctgaaggacgctgcgctctgtgagctcagtcttctgtatgcggaactggaggtggagctgctgtcggacttgagaggggccgccacgtccagagctgtccatgtactaaccaaactgaccgagagcggtccctacgggccctactctgggcaggtcttggctgttcacattctgaaggcccggaaggcttacgagcgagtgcttcaggactgcttggacgagagctgcatcccagacccagctcccaccgactcctttaactgcctggtcagcttggtcagatgctttatgctcttccagtacttgaccatgggcattgatgctgctgtgcagatatacgagcaggtatttacgaaactgaagggctctgtgtcccgtgaaggcactggcctggagcacagcggcagcccccggagcctggccagcgctctggaagctgtcacactgatgtacacgagtctgctccagttccacgtgaaagttagcgtttaccctctgacccctttgcgagaggcactctctgaggctttgaagttgtatccggccaaccaagctctttggaggtcatatgttcaaattcaaaacaagtcccacagtgccagcaagaccagaagattctttgatgcgatcaccaggtccaccaaatccttggagccttggttgtttgcaattgaagccgagaaaatgaggaaaagactggtggaaactgttcagagaaggtggagaagtacatgccacaatccctgagagcggcttaacaaaccgaatcaaagccctgtttgaacatgcgatccagagtgacaacggcagccagtgccccttgctgtggagaatgtacttgaactttttg
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]