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2019-03-23 04:07:51, GGRNA.v2 : RefSeq release 92 (Jan, 2019)

LOCUS       XM_010588803            3357 bp    mRNA    linear   MAM 16-JAN-2018
DEFINITION  PREDICTED: Loxodonta africana NRDE-2, necessary for RNA
            interference, domain containing (NRDE2), transcript variant X3,
            mRNA.
ACCESSION   XM_010588803
VERSION     XM_010588803.2
DBLINK      BioProject: PRJNA70973
KEYWORDS    RefSeq.
SOURCE      Loxodonta africana (African savanna elephant)
  ORGANISM  Loxodonta africana
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae;
            Loxodonta.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_003573429.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 16, 2018 this sequence version replaced XM_010588803.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Loxodonta africana Annotation
                                           Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3357
                     /organism="Loxodonta africana"
                     /mol_type="mRNA"
                     /isolate="ISIS603380"
                     /db_xref="taxon:9785"
                     /chromosome="Unknown"
                     /sex="female"
                     /country="USA: San Diego Zoo, CA"
     gene            1..3357
                     /gene="NRDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 14 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100659618"
     CDS             69..3254
                     /gene="NRDE2"
                     /codon_start=1
                     /product="protein NRDE2 homolog isoform X2"
                     /protein_id="XP_010587105.1"
                     /db_xref="GeneID:100659618"
                     /translation="
MALFPAFAGVSEAADSGSSRKELDWLSNPSFCVGTIIPPSQQLEEAPNLVPEGPPLTRSPLKSEPSDESDTNKKLKQTSRKKKKEKKKKRRHQHHKKTKRKHGQSSGSTSEPDTDAERDKSSRSNSKRESEKPNQENHAAADIGHRCVWLEDIQAATGETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGAPMEKKNSHKHVERYFTKKNVGLMSIDGAAVSSKTEPPSSEAASFIPVKDSEDVAPSVTTWMNPLGIYDHSTTQWLQGQGPLEQETKLPDSQPDRENAVLKAKVEEFNRKIRENPQDIELWMAFVAFQDEVMRRPGLYALDEGEQEKRKRSLKLTLEKKLAILERAIESNPSSVDLKLAKLKLCTEFWEPATLVKEWQKLIFLHPNNTALWQKYLLFCQSQFSTFSVSKIHNLYGKCLSTLSSVKDGSILSHPVLPGTEEAMFALFLQQCHFLRQAGHSEKAVSLFQAMIDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRAGEKGARGWRAWMHQQERGGWVVINPDEDDDEPEEDDQEIRDKTLPRWQIWLGAERSRDQRHWQPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSRDLQFQLVEAFLQFLGVPSGFAPPVSCLYLAMDENSVFVHRLSDEKPLTCSTPSFAGVGCVGRMDRLGCQRWSRGHNREGEEFIRNIFHLVMPLFSGEEKSRLCFSWLRHETAKVIWCLQTKNKKKLKSQGRNCKKLAKSLLKEPENCSSLCLWRQYAHLEWLLGNTEDARKVFDTALSMVGARELKDAALCELSLLYAELEVELLSDLRGAATSRAVHVLTKLTESGPYGPYSGQVLAVHILKARKAYERVLQDCLDESCIPDPAPTDSFNCLVSLVRCFMLFQYLTMGIDAAVQIYEQVFTKLKGSVSREGTGLEHSGSPRSLASALEAVTLMYTSLLQFHVKVSVYPLTPLREALSEALKLYPANQALWRSYVQIQNKSHSASKTRRFFDAITRSTKSLEPWLFAIEAEKMRKRLVETVQRRWRSTCHNP"
     misc_feature    1002..2000
                     /gene="NRDE2"
                     /note="NRDE-2, necessary for RNA interference; Region:
                     NRDE-2; pfam08424"
                     /db_xref="CDD:285605"
ORIGIN      
gccgcgcggccggcgcgcgctcggaggcgccatttctgtagaggggagcggcggcgcagtctgcgaacatggcgctgttcccagcctttgcgggtgttagtgaggccgccgacagcgggagctccaggaaagaattagactggctgagcaacccaagcttctgtgttggaaccataataccaccgagccagcagctggaagaagccccaaaccttgttcctgaggggccaccactgaccaggagtcctttgaaatcagagccttcagatgaaagtgacactaacaaaaaactcaaacaaacaagcaggaaaaagaagaaagagaaaaagaagaaaaggagacatcagcaccacaagaaaaccaagagaaaacatgggcagtcgagtggcagcacatctgagccagatactgacgctgaaagggacaaatcttctagaagcaacagtaaaagggaatctgagaaaccaaatcaagaaaatcatgctgctgcagatattggacatcggtgtgtttggctggaggacattcaggctgcgacgggagaaaccttccgaacagataagaaaccagatcctgcaaactgggagtataagtctctctaccggggggatatagcaagatacaagaggaaaggagactcctgcctgggcattaaccctaagaagcagtgtatatcttgggaaggggctcccatggaaaagaagaattcacacaagcatgttgaacgctattttaccaagaagaacgtgggattgatgagcattgatggagctgctgttagcagtaaaaccgaacctccctcatctgaggcggcctcgtttataccagtgaaggactcggaggatgtggctccttccgtcaccacctggatgaaccctctggggatttacgaccattccaccacgcagtggttacaaggacagggccctttggagcaagagacaaagctgccagactcacagccagacagagagaatgctgttctcaaggccaaggtggaggaatttaacaggaagattcgggagaatcctcaggacattgagctgtggatggcatttgtcgcttttcaggacgaggtcatgagaaggccaggcctgtatgcccttgacgaaggagagcaggagaagcgaaagcggtccctgaagctcaccctggagaagaagctggctatcctggagcgggccatcgagagcaacccaagcagcgtcgacctgaaactcgccaagctgaagctctgcacggagttctgggagcccgccactctggtcaaagagtggcagaagctgatattcttgcaccccaacaatacagccctttggcagaagtaccttctattttgccagagtcaatttagcaccttctcggtatcaaaaattcacaatctttatggaaaatgcttgagtactttgtcttccgttaaggacggcagcatcttatctcatcccgtgttgcctggcactgaggaggccatgtttgctctctttcttcagcagtgccactttctgcggcaggctggccactcggagaaggcagtctctttgttccaggccatgattgacttcaccttcttcaaacctgacagtgtgaaagatctgcctaccaaaggacaggtggaattctttgagcccttttgggacagcggcgagccccgggctggggagaagggggcccgaggctggagagcatggatgcaccagcaggagcggggcggctgggtggtcatcaacccagatgaggatgacgatgagccggaagaggatgaccaggaaataagagataagaccctgcccaggtggcagatctggcttggtgctgagcgttcccgagaccagaggcattggcaaccttggcgccctgataagaccaagaagcaaaccgaggaagattgtgaggatccagagaggcaggtgttgtttgatgatattggacagtctctgatcagactctcaagcagagatctccagtttcagctggttgaagccttcctgcagttcttgggtgtgccttctggctttgcgcccccagtctcctgcctttatctggccatggatgaaaacagcgtcttcgttcacagactttctgatgaaaagccattgacttgttctaccccttcctttgccggcgtgggctgtgttggccgcatggaccgcttgggctgtcagcgctggagcagggggcacaaccgagagggcgaggagtttatccgtaacatcttccacctggtgatgcctttgttctcaggcgaggagaagtctcggctctgcttctcctggttacggcacgagacggcaaaggtcatttggtgtctgcaaactaaaaacaagaagaaattaaagtcacaaggaaggaactgcaaaaaactagccaagagtctcctgaaggagccagaaaactgcagtagtctgtgcctctggaggcagtatgcacatctggagtggctgctgggcaatacagaggatgccaggaaggtttttgatacggcactcagcatggtgggagccagggagctgaaggacgctgcgctctgtgagctcagtcttctgtatgcggaactggaggtggagctgctgtcggacttgagaggggccgccacgtccagagctgtccatgtactaaccaaactgaccgagagcggtccctacgggccctactctgggcaggtcttggctgttcacattctgaaggcccggaaggcttacgagcgagtgcttcaggactgcttggacgagagctgcatcccagacccagctcccaccgactcctttaactgcctggtcagcttggtcagatgctttatgctcttccagtacttgaccatgggcattgatgctgctgtgcagatatacgagcaggtatttacgaaactgaagggctctgtgtcccgtgaaggcactggcctggagcacagcggcagcccccggagcctggccagcgctctggaagctgtcacactgatgtacacgagtctgctccagttccacgtgaaagttagcgtttaccctctgacccctttgcgagaggcactctctgaggctttgaagttgtatccggccaaccaagctctttggaggtcatatgttcaaattcaaaacaagtcccacagtgccagcaagaccagaagattctttgatgcgatcaccaggtccaccaaatccttggagccttggttgtttgcaattgaagccgagaaaatgaggaaaagactggtggaaactgttcagagaaggtggagaagtacatgccacaatccctgagagcggcttaacaaaccgaatcaaagccctgtttgaacatgcgatccagagtgacaacggcagccagtgccccttgctgtggagaatgtacttgaactttttg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]