2024-05-20 08:58:14, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_009884873 1434 bp mRNA linear VRT 24-OCT-2014 DEFINITION PREDICTED: Charadrius vociferus ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 (ST6GALNAC5), mRNA. ACCESSION XM_009884873 VERSION XM_009884873.1 DBLINK BioProject: PRJNA263452 KEYWORDS RefSeq; includes ab initio. SOURCE Charadrius vociferus (killdeer) ORGANISM Charadrius vociferus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Charadriidae; Charadrius. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_009648332.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Charadrius vociferus Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1434 /organism="Charadrius vociferus" /mol_type="mRNA" /isolate="BGI_N301" /db_xref="taxon:50402" /chromosome="Unknown" /sex="female" /country="Peru" gene 1..1434 /gene="ST6GALNAC5" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 11 Proteins" /db_xref="GeneID:104286297" CDS 1..789 /gene="ST6GALNAC5" /codon_start=1 /product="alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5" /protein_id="XP_009883175.1" /db_xref="GeneID:104286297" /translation="
MFTANFEVCMSLQPLKMHCKSCALVTSSGHLLGSKQGDRIDETECVIRMNDAPTRGYGKDVGNKTSVRVIAHSSIQRILRNRNELLNMSHGAVFIFWGPSSYMRRDGKGLVYNNLQLMNQILPQLKAYMISRHKMLQFDDLFKRETGKDRKISNTWLSTGWFTMTIALELCDRINVYGMVPPDFCRDPNHLSVPYHYYEPLGPDECTMYISHERGRKGSHHRFITEKRVFENWARTFNIHFFQPDWKPEPLTVNHPEIKPVV"
misc_feature 31..597 /gene="ST6GALNAC5" /note="Glycosyltransferase family 29 (sialyltransferase); Region: Glyco_transf_29; pfam00777" /db_xref="CDD:425864" ORIGIN
atgtttacagctaattttgaagtatgtatgtctttgcagcctttaaaaatgcactgcaagagttgtgcgttggtaaccagctctggacaccttctgggaagtaaacaaggtgacagaatcgacgagacagaatgcgtaatacgaatgaatgatgcacctactcgaggttatggaaaagatgttggaaacaaaacgagcgttcgagtcattgcacactccagtattcagaggattttgcgaaatcgcaatgaactcttaaatatgagccatggtgctgtgtttatcttctggggtcctagcagctacatgaggagagatggtaaaggcttggtgtataataacctgcagctgatgaatcagatactgcctcaattaaaagcatatatgatttctcgccacaagatgcttcaatttgatgacctttttaaacgggaaactgggaaagacaggaagatatccaacacttggcttagcacgggctggttcacaatgactatcgcgttagagctctgtgacaggataaatgtttatggcatggtgccaccggatttctgcagggatcctaatcatctttccgtaccttatcattattacgaacctttgggacctgatgaatgcacaatgtacatttcacacgagcggggacgaaagggcagtcatcatcgtttcatcacagagaaacgcgtgtttgagaactgggcacggacattcaatattcactttttccaaccagactggaaaccagaaccactcactgtaaatcaccctgagattaaaccggtggtctgagggatgaatgcacaagaccgcaatcacagtcacccactgcatcagcctttggggtgttggaccttctgggacagcaaggcgacccagaggagaagggtaacaggatttgcagctgatgactgcaacaacagtcaggaagttacgatgaaggagcagagcgtatcaagagtactttctgtcaaactgtgttaatccagtatatagccttttctggccatctgacttcctatatgtgtatgtgatttgtgaaaaacaacttgagtatcattaacggctggttaatcattacggttttttaaagtacaatgccactgaattttcatagtgaaaacttacgctatttatttaatggaggttttttatgcaacctaggccagtatttttctaagtcacagttatgtgattgtctatctttcataatctttcaaatcccaaatcaagattgctgatggtttgaaaggcctagctttttatttataaaatttgtttgaaaaatatgattctatatagcatgtaattaatattttatctggaaatgttgcatttcttttaaaaattttgggctccgttccagcctaaagcctttaacagcaagaatggtcccatgtgcagatctagctaactttacattctgacatctcatgt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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