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2021-01-24 05:38:22, GGRNA.v2 : RefSeq release 203 (Nov, 2020)

LOCUS       XM_009635352            3708 bp    mRNA    linear   VRT 20-AUG-2020
DEFINITION  PREDICTED: Egretta garzetta argonaute RISC component 4
            (LOC104123135), mRNA.
ACCESSION   XM_009635352
VERSION     XM_009635352.2
DBLINK      BioProject: PRJNA253831
KEYWORDS    RefSeq.
SOURCE      Egretta garzetta (little egret)
  ORGANISM  Egretta garzetta
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Pelecaniformes; Ardeidae; Egretta.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_009259109.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 20, 2020 this sequence version replaced XM_009635352.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Egretta garzetta Annotation Release
                                           101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3708
                     /organism="Egretta garzetta"
                     /mol_type="mRNA"
                     /isolate="BGI_Z169"
                     /db_xref="taxon:188379"
                     /chromosome="Unknown"
                     /sex="male"
                     /country="China"
     gene            1..3708
                     /gene="LOC104123135"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 37 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:104123135"
     CDS             181..2565
                     /gene="LOC104123135"
                     /codon_start=1
                     /product="protein argonaute-4"
                     /protein_id="XP_009633647.1"
                     /db_xref="GeneID:104123135"
                     /translation="
MVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGKDQTFKVSIQWVSVVSLQLLLEALAGHLNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKLTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQETSQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"
     misc_feature    190..444
                     /gene="LOC104123135"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:374571"
     misc_feature    475..627
                     /gene="LOC104123135"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:370073"
     misc_feature    628..990
                     /gene="LOC104123135"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(784..786,829..831,871..873,883..885,937..939,
                     958..960,964..966)
                     /gene="LOC104123135"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1129..2436
                     /gene="LOC104123135"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1540..1542,1552..1554,1588..1599,1606..1608,
                     1630..1632,1639..1641,1651..1653,1663..1665)
                     /gene="LOC104123135"
                     /note="5' RNA guide strand anchoring site; other site"
                     /db_xref="CDD:240015"
     misc_feature    order(1744..1746,1750..1752,1990..1992,2404..2406)
                     /gene="LOC104123135"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
cccccggcaagcctcttccagccgccccgtcgcccaggcctgggaactgttgggaaacccatccgcctcctagccaaccactttcaggttcagatccccaagattgatgtttatcactatgatgtggatatcaaaccagaaaaacgcccccgaagagtgaacagagaggtggtggatactatggtgagacacttcaagatgcagatatttggtgatcggcagcctggatacgatgggaaacggaacatgtatactgcacacccgctacctatcggccgggatagggtggatatggaggtgacgcttccaggagaggggaaggaccagactttcaaagtatccattcagtgggtgtccgtcgtcagcctgcagttgctgctggaagctctggcagggcacttgaatgaagttcctgaagattctgtacaggcacttgacgtaatcacgcggcaccttccctccatgaggtacactcctgtgggtcgctcctttttttccccccctgaaggttattaccaccctctgggtggtggcagagaggtctggtttggtttccaccagtcagtcaggcccgccatgtggaacatgatgctcaacattgatgtgtcagcaactgctttctatcgtgcgcagcctatcattgagttcatgtgtgaggtcctggacattcagaatatcaatgaacaaaccaagcctctcacggactcccagcgtgtcaaatttaccaaagaaatcagaggtctaaaagtagaggttacccactgtggccagatgaagagaaaataccgagtttgcaatgttactcggcgaccagccagtcatcagacgtttcctctgcagctggaaaatgggcaggctatggagtgtacagtagctcagtattttaagcagaagtacagcctgcagctaaaatatcctcaccttccctgtctccaagtaggacaggaacagaaacacacgtacttaccgcttgaggtgtgtaacatagtggcaggccagagatgtataaagaagctaacggacaatcagacatcgacgatgataaaagcaactgcaagatctgcaccggaccggcaggaagaaatcagcaggctcgtgaaaagtaacagtatggttggtggacccgatccatacctgaaggagtttggtattgttgtccataatgaaatgacagagctgacgggcagagttttgccagcaccaatgctgcagtacggaggcaggaacaagactgtggccacaccaaaccaaggtgtgtgggacatgagagggaaacagttctacgctggcattgagattaaagtttgggctgttgcctgttttgctcctcaaaaacaatgcagggaagacttactaaagagttttacggaccagctgcgcaagatctccaaggatgcagggatgcccatccaaggccagccctgtttctgcaaatacgcccagggtgcagacagcgtggagcccatgtttaaacacttaaaactgacttatgttggtctgcagctgatcgtggtgattctgcccggcaagacacccgtatatgctgaagtaaagcgagttggtgacactcttctaggaatggccactcagtgtgttcaggtaaagaatgtggtaaaaacctcaccgcaaacgctgtccaacctgtgtctgaagataaatgcaaagcttggaggaatcaacaatgtgcttgtacctcatcaaaggccctcggtgttccagcagccagtgatctttttgggagcagatgtcactcaccctcctgctggggacgggaagaagccttccatcgctgctgtggtaggcagcatggatggccaccctagccgttactgcgctacggtgcgcgtgcagacctcccgccaggagacctcccaggagttgctgtacagtcaggaggtgatacaggacctgactaatatggtgcgagaactattgattcagttctacaaatccactcgtttcaagcccacaaggatcatctactacagagggggagtatcagaaggacagatgaagcaggtagcttggccagaactgatagcaatccggaaggcctgtattagtttggaagaagattatagacccggaataacctacattgttgtgcagaaaaggcatcacaccagattgttctgtgctgacaagactgaaagggtgggtaagagcggcaacgtaccggcaggcactaccgtggacagcacgatcacgcatccttctgaattcgacttttacctctgtagccatgcaggaattcagggaaccagccggccctcccattaccaggtcttgtgggatgacaactgttttactgcagacgaactacagctgttgacgtaccagctgtgtcacacgtacgtccggtgtacgcgatccgtctctattccagctcctgcatactatgccaggctggtagcgtttagggccaggtaccatctcgtggacaaggatcatgacagtgctgaaggcagccacgtgtcgggacagagcaatggccgcgatcctcaggctctggcaaaggcagtgcagatccaccatgacactcagcatacgatgtattttgcttgagagcatctgggaagatgaggcaaaaccaacgacccgtgcagtcctgaaatgttttgaatgcctactgctatggctagggcccagtttatttcagactgcccgctaccagcagctctgaacagtcgcactgaatctgtacttcacagcaatgtctgatgcaccaacacaattgagccatttgtttcattattttatgtaatagaaattcatagactgtcttttctgatgcattggactgaatttttacctcaaagcgcaaaaggctgatcatcctgaaatttttaaaggacttggcacgaaaggtttctattgaatattttgctagctatcgtttttaagttatcttctcatcccgtgagtttatcatgacgactgattccctgtcttcatgcactgcttcgtgagtatgcgtattacggcaaaacgttttactccagtgaaatgtaattgttctattgtgtggggccatagattttttaatggagattttagacttcactactgtaaatgccttttaacgaacataactttcacaggtattgcagttttttgtcggttttcctaattatctttttaatctctgcagacttcggctgcaaagcaattgcactatactgcgagttcagatgggtggttcttgttctgtgaatgtgtaatataaccagatagcgatgcctgtcagtagattttaattgtaatggttacaaataatactgccatggtatcctaacaagtactgaaccatcgtttccccctctaaaaatgataaaaaaaaaaaaaaaaaaaaaaaattagcttttaggtattttgcagacttttacaaaagtgcccactttatgctgctgtgtggtttgataaatctaagtgattttaaaacttttttctcataggaggtttaactttggcaataaatatttgttttttaagccccccaacagtgtaattttctagctgaggattgtgcatgagtttaaccaatgttctcgtgtcgtttccgaacacacaattcggcagtttctgaaactcattagaaaagacgcacttccatgcttttttttaagaattatttttaactgttttatattcactgttggtgtcctgtctacaacatttttttataagcttggaaactgggtgttacgt
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]