LOCUS       XM_009252600            2496 bp    mRNA    linear   PRI 06-MAR-2024
DEFINITION  PREDICTED: Pongo abelii retina and anterior neural fold homeobox 2
            (RAX2), transcript variant X1, mRNA.
ACCESSION   XM_009252600
VERSION     XM_009252600.4
DBLINK      BioProject: PRJNA944618
KEYWORDS    RefSeq.
SOURCE      Pongo abelii (Sumatran orangutan)
  ORGANISM  Pongo abelii
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Pongo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_072005) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 6, 2024 this sequence version replaced XM_009252600.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_028885655.2-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/27/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2496
                     /organism="Pongo abelii"
                     /mol_type="mRNA"
                     /isolate="AG06213"
                     /db_xref="taxon:9601"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="fibroblast"
     gene            1..2496
                     /gene="RAX2"
                     /note="retina and anterior neural fold homeobox 2; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 6 Proteins"
                     /db_xref="GeneID:100436730"
     CDS             192..884
                     /gene="RAX2"
                     /codon_start=1
                     /product="retina and anterior neural fold homeobox protein
                     2 isoform X1"
                     /protein_id="XP_009250875.3"
                     /db_xref="GeneID:100436730"
                     /translation="

MPAPVEGTDFPGAGRQAWGSPALCLPVAPPAVSPPSVLLPSRQVGAMFLSPGEGPAAEGGGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEPWLGPGPQAMPGLPRLLGPGPGLQASFGPHAFGPTFADGFALEEASLRLLAKEHAQALERAWPPA"

     misc_feature    411..581
                     /gene="RAX2"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
ORIGIN      

agacacggcgccgggcccgctggggcaggtgcctcgtggagatcgacggaggggctgccgtgggcggccgtgacagccacagagaggggaaaacagggacggtgacacacacagagagaaggaagagcagacagaggcacagcaggagacccccccaagcccgaggaggacagcccggggatgcagagcgcatgccggccccagtggagggaacagatttccccggagccgggaggcaagcctggggctcccctgccctgtgcctgccggtagcccccccggccgtctccccgccatctgtcctgctgccgtcccgccaggtgggagccatgttcctgagcccgggcgaggggccggcagccgagggtgggggtctggggccgggcgaggaggcccccaagaagaagcaccggaggaaccgcaccaccttcaccacctaccagctgcaccagctggagcgggcgttcgaggcctctcactacccggatgtgtacagccgtgaggagctggcggccaaggtgcacctacctgaggtgcgcgtgcaggtgtggttccagaaccgccgggccaagtggcgtcgccaggagcggctggagtcaggctcgggtgccgtggcagctccgagactccccgaggccccagcgctgccgttcgctcgccccccagccatgtcgctgcccctggagccctggttgggccccggaccgcaggccatgccaggcctcccccgcctcctgggcccgggcccggggctgcaagcgtccttcgggcctcatgcctttggtcccaccttcgcagatggcttcgccctggaggaggcgtccctgcggctgctggccaaggaacacgcacaggctctggaaagggcctggccgccggcctgagcctgccgccctcccggcccccctcctccgcccgacccgagaacccgggacgtgccctggtgacagccaccacgccttggcctaggcgaaggtcatggagcaaccgtggtcaggccaggccaccaccactggggagcgggacctgagagacaggctgctgggtcccctgcccccatcccgtcccccaccccatcaccacccgtcctgctggcagcggaccggcccccagtgtcagggaggaggtgacccaaatatttctcaggccacgggcagggccctcctcccctcctgaggcctcagtctcccgtctgttaattgggcgtgggggcctctgaggttcgtgggctgcgaggctgtgggtggtggggccgctgactctgggagatgagtgtgaatctctctgctgctcctaatccccatcagcagagctgcccactctccaggctcccagtcccccggaaataacaaacagcagcagctcccacgagcctggtctcctctccccgtgcacccgccatgtgagcgctcccctctccgttgcgccctggacctcgggcacagctgtcagcccattctacagagagggaaaccggggctcaggcaggaagccaggtccccaaggttgcagggccaggagtggatggagctgcctttcagacccatcaccagtcctaccgtccggggcacagcgacaggttctggagggagggtgggccccttgtgtggaggcgggctgatgctgggcgtgtcgtcatcgtcagcccgttcctcacgtccccacagaccccaggccccgtgcatgtcccctgcggaggcatggccagcatctgctctgtccaacccagttgcattgctcaagagctctgagcaaggaggctgtcgcggggccaagaacccgctgggactggcaagcacagctggcccagtgcagcaggagggccctgagccatgggatgggacagcctgggccagggccaccccctgggccacagaagtgtggcaccagggcaggagctgcagtagctaccctccccgtctccagcccgggctccccagatcactcccagatcaccggggcaccccatctctaggtggcacctcacacaccagtcctgtggcccaacgcccagccatcacccagtgtcaccgtgcaccaggcactggggacgtggcagtaagcacaagaaagatttttgtttttaaagctaaaccaggccaggtgcggtggctcacacctgtaatcccagtgctttgggaggctgaggtgggaggattgcttgagaccagccggggtgacacagcaagaccccatctccacaaacatttttaaaatgtgccaggtgtagtggtgcacacctgtcatcccagctacccaagaagctgaggcaagaggatcgcttgagcccagaaggtcgaggctgcagggagctgtgatcacaccgctgcactccagcctgtgcaacagagccagaccctgactcaaaacaaataaaaaacaaatctaaaacgaaagacttcagacagtgataagcgatagggagaaaaaaaaaaaacaaaaaaacaggaaaggcagatgcggagtgtggcaggggctgcaattttaatagggagt

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