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2019-03-26 15:04:17, GGRNA.v2 : RefSeq release 92 (Jan, 2019)

LOCUS       XM_008501529            1339 bp    mRNA    linear   VRT 10-JUL-2014
DEFINITION  PREDICTED: Calypte anna zinc finger protein 420-like
            (LOC103535473), partial mRNA.
ACCESSION   XM_008501529
VERSION     XM_008501529.1
DBLINK      BioProject: PRJNA253828
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Calypte anna (Anna's hummingbird)
  ORGANISM  Calypte anna
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Trochiliformes; Trochilidae;
            Calypte.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_007621678.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Calypte anna Annotation Release 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 6.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 89% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..1339
                     /organism="Calypte anna"
                     /mol_type="mRNA"
                     /isolate="BGI_N300"
                     /db_xref="taxon:9244"
                     /chromosome="Unknown"
                     /sex="female"
                     /country="USA"
     gene            <1..>1339
                     /gene="LOC103535473"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins"
                     /db_xref="GeneID:103535473"
     CDS             <1..>1339
                     /gene="LOC103535473"
                     /codon_start=2
                     /product="zinc finger protein 420-like"
                     /protein_id="XP_008499751.1"
                     /db_xref="GeneID:103535473"
                     /translation="
PCPCPDCGKSFNDKSNLTQHRRIHSGERPHACPVCRKTFTDKSTLNQHRSVHSREKPFSCGRCGKSFTRSFHHKRHLRRAQARGGWPCAKSPPGKRNGRNGRNGHEWSEGQEGSKGQELATGQELAKGQDPLSTQELAKGQEKTKGQEEIEGQELTKSQELTKGQEEIEGQELTKGLEKTKGQELTKSQELTKGQEEIDGQELTKNQELTNGQESANPQALPGAALLIRHPCPPLTKKPYGCPHCGRRRHLRRAQARGGWPCAKSPPGKRNGRNGRNGHEWSEGQEGSKGQELAKGQELTKGQEEIEGQELTKSQELTKGQEEIEGQELTKGLEKTKGQELTKSQELTKGQEEIDGQELTKGQEEIDGQELAKSQELTKGPKKVDGQELTKNQELTNGQESANPQALPGAALLIRHPCPPLTKKPYGCPHCGRRFSLGSALLQHRQ"
     misc_feature    8..>181
                     /gene="LOC103535473"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    11..73
                     /gene="LOC103535473"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    11..73
                     /gene="LOC103535473"
                     /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096"
                     /db_xref="CDD:278523"
     misc_feature    order(11..13,20..22,59..61,71..73)
                     /gene="LOC103535473"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(26..28,32..34,38..40,44..49,56..61,68..70,110..112,
                     116..118,128..133,140..145,152..154,194..196,200..202,
                     206..208,212..217,224..229)
                     /gene="LOC103535473"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    47..121
                     /gene="LOC103535473"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:290200"
     misc_feature    95..157
                     /gene="LOC103535473"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(95..97,104..106,143..145,155..157)
                     /gene="LOC103535473"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    134..208
                     /gene="LOC103535473"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:290200"
     misc_feature    179..235
                     /gene="LOC103535473"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1283..1336
                     /gene="LOC103535473"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
gccctgcccctgccccgactgcgggaagagcttcaacgacaagtccaacctgacccagcaccgccggatccacagcggggagcggccccacgcctgccccgtctgccgcaaaaccttcaccgacaagtccacgctcaaccagcaccgcagcgtccacagccgcgagaaacccttctcctgcgggcgctgcgggaagagcttcacccggagcttccaccataagaggcacctccggagggcgcaggcccgtggggggtggccctgtgcaaagagcccccccggcaagagaaacgggagaaacgggagaaacgggcacgagtggagcgaggggcaagaggggagcaagggccaagagttggccacgggtcaagagttggccaagggtcaagaccctctctccactcaagagttggccaagggccaagagaagaccaaggggcaagaggagattgagggccaagagttgaccaagagtcaagagttgaccaagggtcaagaagagattgagggccaagagttgaccaagggcctagagaagaccaaggggcaagagttgaccaagagccaagagttgaccaagggtcaagaggagattgacggccaagagttgaccaagaaccaagagttgaccaacggccaagagtcagccaatccccaggccctccccggcgccgccctgctgatccgacacccgtgtccccccctcaccaagaagccctacgggtgcccccactgcgggcggaggaggcacctccggagggcgcaggcccgtggggggtggccctgtgcaaagagcccccccggcaagagaaacgggagaaacgggagaaacgggcacgagtggagcgaggggcaagaggggagcaagggccaagagttggccaagggtcaagagttgaccaagggccaagaggagattgagggccaagagttgaccaagagtcaagagttgaccaagggtcaagaagagattgagggccaagagttgaccaagggcctagagaagaccaaggggcaagagttgaccaagagccaagagttgaccaagggtcaagaggagattgatggtcaagagttgaccaagggtcaagaggagattgatggccaagagttggccaagagccaagagttgaccaagggtccaaagaaggttgacggccaagagttgaccaagaaccaagagttgaccaacggccaagagtcagccaatccccaggccctccccggcgccgccctgctgatccgacacccgtgtccccccctcaccaagaagccctacgggtgcccccactgcgggcggaggttcagcctgggctcggcgctgctccagcaccgccag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]