2024-05-02 06:31:44, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_008248328 2547 bp mRNA linear PLN 11-MAY-2016 DEFINITION PREDICTED: Prunus mume uncharacterized LOC103344706 (LOC103344706), transcript variant X2, mRNA. ACCESSION XM_008248328 VERSION XM_008248328.2 DBLINK BioProject: PRJNA246160 KEYWORDS RefSeq. SOURCE Prunus mume (Japanese apricot) ORGANISM Prunus mume Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024126.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On May 11, 2016 this sequence version replaced XM_008248328.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Prunus mume Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2547 /organism="Prunus mume" /mol_type="mRNA" /isolate="4" /db_xref="taxon:102107" /country="China: Tongmai, Bomi County, Tibet" /lat_lon="30.1039 N 95.0856 E" /linkage_group="LG1" gene 1..2547 /gene="LOC103344706" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 mRNAs, 2 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns" /db_xref="GeneID:103344706" CDS 387..2294 /gene="LOC103344706" /codon_start=1 /product="uncharacterized protein LOC103344706 isoform X2" /protein_id="XP_008246550.1" /db_xref="GeneID:103344706" /translation="
MKMSSPAEVSNKPDVSEKKIASPAEASNSGKKTPRSLKGKAKIVKKTPIHNSLKTSKGTTSSQVNGRKRRRNRGNNESGNKREEDAKKMNSKREKQENIVNEKHAEKSHWAQKNPVKIDESEKSRQKQQSTEKRRGSDKSVKSQRNSEKHDEKREKLGGLIFMCSGKTKPDCFHYRIMGVSMGKKDLVLGIKPGLKLFLFDFDLKLLYGVYKASSSGGLKLEPKAFGGAFPAQVRFNVEKDCLPLPESVFKKAIQENYNEKKKFKTELTVRQVRKLTALFQPAQVHSTALATRSPVQAKVRDRGVHEGARESLPHAHRDAHARDLYANGDARSYPVLAHERDQHVKYRDVASVRREETSHDLYLTEKEYRAYGLRGERRNVSPCIVPPALEAHHREYEREHLARQPNLIYREAVPAHRENVHNVSPRIVPPALEARHREYERERLARQPNLIYREAVPAHRETVHSDPLYLNDRDYPAYTRGARHELPPATSASAVDAYASDPYYGYSYYGSSSLDPYLAPQRREEVPSGSFSVVGRRENHLIETDPPRRETDRVERLYSTHAFGGRRENYLIETDPVLRRETDRGERLYSMHAAPADAASGYNRTENYQATKADALPAPVSSRYAFAGPSYSYR"
misc_feature <408..>854 /gene="LOC103344706" /note="MAEBL; Provisional; Region: PTZ00121" /db_xref="CDD:173412" misc_feature 858..1226 /gene="LOC103344706" /note="Development and cell death domain; Region: Dev_Cell_Death; pfam10539" /db_xref="CDD:431346" ORIGIN
gagggagatatggttattttcttttgatgcccttaaaagaaaaaagtgccgaaagaaattagcgggtataaaaggaggctactccggtaattggcaaattccagacagagagaaggaacaaatcgttcttgattttattatctttctttctgttccagatattctcccctcccctgtttaacgttcgtcggagtctctcagtctctgattctcttgaagcaacgaagattctgtggcttctgtttggtcgctgtgggaaagaagcatccaacaacctggattcatctgaacaaatcccctctccagcacaagcatcaaaaaaaccagactcatctgaactgaagacctcttctgctgaagcgttcagtggacctgagtcagctaaaatgaaaatgtcttctcctgcagaagtgtctaataaacctgatgtatctgaaaagaaaattgcctctcctgcagaagcatccaactctggaaagaaaaccccaagatcattgaagggcaaagctaaaatagtgaagaaaactcccattcataacagcttgaaaacgagcaaaggtacaactagctcacaggttaatgggaggaaacgaaggcggaataggggtaacaacgagagtggcaacaaaagagaagaagatgccaagaagatgaattcaaaaagagagaaacaagagaatatcgtgaatgaaaagcatgccgagaagagccattgggctcaaaagaatccagtaaagattgacgaatccgaaaagagccgacaaaaacagcagagtacagaaaaacgacgtgggtcagacaagagtgtgaagagtcaaaggaacagcgaaaaacatgatgaaaagagggaaaagcttggtggtttgatcttcatgtgcagtggaaagacaaagccagactgcttccattaccgtatcatgggtgtttcaatgggtaaaaaagaccttgtgttgggtatcaaacctgggttgaagctttttctctttgattttgatcttaagcttttgtatggagtttacaaagcatcctcttcaggtggcctaaaactcgagccaaaagcatttggcggagccttccctgctcaggtgcggttcaacgtggagaaagattgtcttcctctacctgagagtgttttcaagaaggcaatacaagaaaactataatgagaaaaagaagttcaaaacagaacttacagttcgacaagtcaggaagctcacagcacttttccaaccagctcaagtccattcaactgctctagccacccgttccccagtccaggctaaagttcgggatcggggagttcatgaaggagcaagggaatcactgccacatgcccacagggatgcacatgctagagatctttatgccaatggtgatgctaggagttatccagtgttagctcatgaaagggaccagcatgttaaataccgagatgtggcatctgtaaggagagaggaaacttcgcatgatttataccttactgaaaaggaatatcgagcttatggtcttcggggagagagaagaaatgtgtctccttgtatcgttcctccagctctggaagctcaccatagagagtatgaaagagagcatcttgcaagacagccaaacctcatttaccgggaggctgtccctgcacatcgagaaaatgttcataacgtgtctcctcgtatcgttcctccagctctggaagctcgccatagagagtatgaaagagagcgtcttgctagacagccaaacctcatttaccgggaggctgtccctgcacatcgagaaactgttcattccgatcctctctacttgaatgatagagattacccagcttatactcgcggtgctagacatgagttgccacctgcaacatctgcttctgctgtagatgcgtatgcaagtgatccatattacggctactcctattatggttcttcatcattggacccatatttggcaccccagaggagagaggaagttccttcgggatctttttctgttgttgggaggagagagaatcatctaattgaaactgatcctccgaggagagaaactgatcgtgtggagagattatattcaacacatgcttttggtgggaggagagagaactatctgattgagactgatcctgtgctaaggagagaaactgatcgtggagagagactatactcaatgcatgctgctcctgctgatgctgcatccggttataaccggacagaaaactaccaggcaaccaaggctgatgcattgcctgcgccagtttcatctcgttatgcttttgcaggtccgtcatactcctaccgctaaatggcgcccttgcatcccctgtatgtgggcttttttttctaggttttttttttttttttaaacaatagggaaaaaaactgcatgtgacaaatatttgaactttcagacccaaagaagggactaatacttttaacttgttagttgaatttgttaaatggtgctgccgaggttggcagtataaatgttggaacttatttattttgccttggcaagtttaaagagtaataataatgaaagggtagctttggattta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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