2024-04-26 12:28:13, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_008224006 1320 bp mRNA linear PLN 11-MAY-2016 DEFINITION PREDICTED: Prunus mume dr1-associated corepressor (LOC103322124), mRNA. ACCESSION XM_008224006 VERSION XM_008224006.2 DBLINK BioProject: PRJNA246160 KEYWORDS RefSeq; includes ab initio. SOURCE Prunus mume (Japanese apricot) ORGANISM Prunus mume Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024127.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On May 11, 2016 this sequence version replaced XM_008224006.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Prunus mume Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 6% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1320 /organism="Prunus mume" /mol_type="mRNA" /isolate="4" /db_xref="taxon:102107" /country="China: Tongmai, Bomi County, Tibet" /lat_lon="30.1039 N 95.0856 E" /linkage_group="LG2" gene 1..1320 /gene="LOC103322124" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 1 Protein, and 88% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:103322124" CDS 166..1095 /gene="LOC103322124" /codon_start=1 /product="dr1-associated corepressor" /protein_id="XP_008222228.1" /db_xref="GeneID:103322124" /translation="
MAEEQNAAREADNIAGEENAEQEEENAEQEEEKAEQAEENAEQAEEKAEQAEDDAEQEEDNAEQEEDNPENAVENATVKEKAKVAQEEENAEPIRSENSQIRPEFPNTRVKRIMKLDRGINKVNSEALLLVSCSAQLFLEFLAERSAEVATEKKRKIVKLEHMRVAVKRHRPTSDFLWDELPVPCQPSDHQPTDRSSSRTVSHAPAPARRDRSRSRAVSDKPAPAGTRRIDHFFLTKEIPIQTEQSLIETEEAPIETEEAPIETDESPIETDEASIETEEASIEIDEAPIVTDEGPIETGEGPIETNES"
misc_feature 472..666 /gene="LOC103322124" /note="Histone-like transcription factor (CBF/NF-Y) and archaeal histone; Region: CBFD_NFYB_HMF; pfam00808" /db_xref="CDD:395650" ORIGIN
tctgaacttgatatggcaaacaaagtaataaaacctccaaagcaagtgcaatgtcgtccgtcgaaaacatgataacagggaatatttcccgccatttcaaaaccctaacacaacattttcgtttttcgattactcattcctgaccagagagcgtcgcaaccatcaatggcagaagagcagaacgcagcacgagaagcagataacatagcaggagaagagaacgcagagcaagaagaagaaaacgcagagcaagaagaagagaaagcagagcaagcagaagagaacgcagagcaagcagaagagaaagcagagcaagcagaagacgacgcagaacaagaagaagacaacgcagaacaagaagaagataacccagaaaacgcagtcgagaacgcaacagtaaaggaaaaagcgaaggtagcacaagaagaagagaacgcagaaccgatccgatccgaaaattcacagatccgacccgaatttccgaatactcgggtgaagaggataatgaagctggacaggggcatcaacaaggtaaattcagaagccttactccttgtatcgtgctccgcccagctcttcctggagttcctggctgagagatcggctgaggttgcgacggagaagaagcgcaagatcgtgaagctcgaacacatgcgagtagccgtcaagaggcatcgcccgaccagcgatttcctttgggatgagcttcccgtgccctgtcagccatccgatcatcagcctactgatcgaagcagctcgcgcaccgtttcccatgctccagctccggctagacgagatcggagccgctctcgcgccgtttccgataaaccagctccagctggcactcgccggatcgatcacttctttctgacaaaagaaatcccgattcagaccgaacaatccctaattgagaccgaggaagccccaattgagaccgaggaagcccccattgagaccgacgaaagtccaattgagactgatgaagcttcaatagagaccgaggaagcttcaattgagatcgacgaagccccaattgtgaccgacgaaggtccaattgagaccggtgaagggccaattgagaccaacgagtcctagatcttcgttcgttctttgcctgtcttaaagaagcaaaatcattttgtttggtcaagttgtaattgtgagaaaccaatggaaaatatctgatggacacaaggagattaattccaaattttctttataatccattttctatttttcctatggatttgatatttatgattgacctaagcactgcagtgaagctccacggcaatgggggaaaatctctaccgttctgct
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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