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2024-04-26 12:28:13, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_008224006            1320 bp    mRNA    linear   PLN 11-MAY-2016
DEFINITION  PREDICTED: Prunus mume dr1-associated corepressor (LOC103322124),
            mRNA.
ACCESSION   XM_008224006
VERSION     XM_008224006.2
DBLINK      BioProject: PRJNA246160
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Prunus mume (Japanese apricot)
  ORGANISM  Prunus mume
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae;
            Amygdaleae; Prunus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_024127.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On May 11, 2016 this sequence version replaced XM_008224006.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Prunus mume Annotation Release 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 6% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1320
                     /organism="Prunus mume"
                     /mol_type="mRNA"
                     /isolate="4"
                     /db_xref="taxon:102107"
                     /country="China: Tongmai, Bomi County, Tibet"
                     /lat_lon="30.1039 N 95.0856 E"
                     /linkage_group="LG2"
     gene            1..1320
                     /gene="LOC103322124"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 Protein, and 88%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:103322124"
     CDS             166..1095
                     /gene="LOC103322124"
                     /codon_start=1
                     /product="dr1-associated corepressor"
                     /protein_id="XP_008222228.1"
                     /db_xref="GeneID:103322124"
                     /translation="
MAEEQNAAREADNIAGEENAEQEEENAEQEEEKAEQAEENAEQAEEKAEQAEDDAEQEEDNAEQEEDNPENAVENATVKEKAKVAQEEENAEPIRSENSQIRPEFPNTRVKRIMKLDRGINKVNSEALLLVSCSAQLFLEFLAERSAEVATEKKRKIVKLEHMRVAVKRHRPTSDFLWDELPVPCQPSDHQPTDRSSSRTVSHAPAPARRDRSRSRAVSDKPAPAGTRRIDHFFLTKEIPIQTEQSLIETEEAPIETEEAPIETDESPIETDEASIETEEASIEIDEAPIVTDEGPIETGEGPIETNES"
     misc_feature    472..666
                     /gene="LOC103322124"
                     /note="Histone-like transcription factor (CBF/NF-Y) and
                     archaeal histone; Region: CBFD_NFYB_HMF; pfam00808"
                     /db_xref="CDD:395650"
ORIGIN      
tctgaacttgatatggcaaacaaagtaataaaacctccaaagcaagtgcaatgtcgtccgtcgaaaacatgataacagggaatatttcccgccatttcaaaaccctaacacaacattttcgtttttcgattactcattcctgaccagagagcgtcgcaaccatcaatggcagaagagcagaacgcagcacgagaagcagataacatagcaggagaagagaacgcagagcaagaagaagaaaacgcagagcaagaagaagagaaagcagagcaagcagaagagaacgcagagcaagcagaagagaaagcagagcaagcagaagacgacgcagaacaagaagaagacaacgcagaacaagaagaagataacccagaaaacgcagtcgagaacgcaacagtaaaggaaaaagcgaaggtagcacaagaagaagagaacgcagaaccgatccgatccgaaaattcacagatccgacccgaatttccgaatactcgggtgaagaggataatgaagctggacaggggcatcaacaaggtaaattcagaagccttactccttgtatcgtgctccgcccagctcttcctggagttcctggctgagagatcggctgaggttgcgacggagaagaagcgcaagatcgtgaagctcgaacacatgcgagtagccgtcaagaggcatcgcccgaccagcgatttcctttgggatgagcttcccgtgccctgtcagccatccgatcatcagcctactgatcgaagcagctcgcgcaccgtttcccatgctccagctccggctagacgagatcggagccgctctcgcgccgtttccgataaaccagctccagctggcactcgccggatcgatcacttctttctgacaaaagaaatcccgattcagaccgaacaatccctaattgagaccgaggaagccccaattgagaccgaggaagcccccattgagaccgacgaaagtccaattgagactgatgaagcttcaatagagaccgaggaagcttcaattgagatcgacgaagccccaattgtgaccgacgaaggtccaattgagaccggtgaagggccaattgagaccaacgagtcctagatcttcgttcgttctttgcctgtcttaaagaagcaaaatcattttgtttggtcaagttgtaattgtgagaaaccaatggaaaatatctgatggacacaaggagattaattccaaattttctttataatccattttctatttttcctatggatttgatatttatgattgacctaagcactgcagtgaagctccacggcaatgggggaaaatctctaccgttctgct
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]