GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-05-19 16:54:49, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_007710509             735 bp    mRNA    linear   PLN 05-JAN-2024
DEFINITION  Bipolaris zeicola 26-R-13 uncharacterized protein
            (COCCADRAFT_86552), partial mRNA.
ACCESSION   XM_007710509
VERSION     XM_007710509.1
DBLINK      BioProject: PRJNA245123
            BioSample: SAMN02981449
KEYWORDS    RefSeq.
SOURCE      Bipolaris zeicola 26-R-13
  ORGANISM  Bipolaris zeicola 26-R-13
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae;
            Pleosporaceae; Bipolaris.
REFERENCE   1  (bases 1 to 735)
  AUTHORS   Condon,B.J., Leng,Y., Wu,D., Bushley,K.E., Ohm,R.A., Otillar,R.,
            Martin,J., Schackwitz,W., Grimwood,J., MohdZainudin,N., Xue,C.,
            Wang,R., Manning,V.A., Dhillon,B., Tu,Z.J., Steffenson,B.J.,
            Salamov,A., Sun,H., Lowry,S., LaButti,K., Han,J., Copeland,A.,
            Lindquist,E., Barry,K., Schmutz,J., Baker,S.E., Ciuffetti,L.M.,
            Grigoriev,I.V., Zhong,S. and Turgeon,B.G.
  TITLE     Comparative genome structure, secondary metabolite, and effector
            coding capacity across Cochliobolus pathogens
  JOURNAL   PLoS Genet. 9 (1), E1003233 (2013)
   PUBMED   23357949
REFERENCE   2  (bases 1 to 735)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-DEC-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 735)
  AUTHORS   Ohm,R.A., Condon,B.J., Leng,Y., Wu,D., Bushley,K.E., Otillar,R.,
            Martin,J., Schackwitz,W., Grimwood,J., MohdZainudin,N., Xue,C.,
            Wang,R., Manning,V.A., Dhillon,B., Tu,Z.J., Steffenson,B.J.,
            Salamov,A., Sun,H., Lowry,S., LaButti,K., Han,J., Copeland,A.,
            Lindquist,E., Barry,K., Schmutz,J., Baker,S., Ciuffetti,L.M.,
            Grigoriev,I.V., Zhong,S., Nordberg,B.G., Cantor,M.N. and Hua,S.X.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (18-SEP-2013) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_006912067).
            
            ##Metadata-START##
            Organism Display Name :: Cochliobolus carbonum 26-R-13
            GOLD Stamp ID         :: Gr00269
            ##Metadata-END##
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Bipolaris zeicola 26-R-13"
                     /mol_type="mRNA"
                     /strain="26-R-13"
                     /db_xref="taxon:930089"
                     /chromosome="Unknown"
     gene            <1..>735
                     /locus_tag="COCCADRAFT_86552"
                     /db_xref="GeneID:19152180"
     CDS             1..735
                     /locus_tag="COCCADRAFT_86552"
                     /codon_start=1
                     /product="uncharacterized protein"
                     /protein_id="XP_007708699.1"
                     /db_xref="GeneID:19152180"
                     /db_xref="InterPro:IPR001424"
                     /db_xref="InterPro:IPR006121"
                     /db_xref="JGIDB:Cocca1_86552"
                     /translation="
MTVTAFETIFAVPMTCQSCINDIEGSLHQLSGINKVTANLKEQLVSVEGTAAPSAIVEAIQATGRDAVLRGSGKSDSAAVCILESHAPQVENKVRGLVRMVEVSPGMTIVDLSIRGLSPGTYHATVRESGNISEGPESTGGIWELGQSQKETKACRGIFGTVQVGKGGVGSVFLDKPIHIWEVIGRSIVVAKEQDGKFDKNDADTLVGVIARSAGVWDNDKTVCSCSGKTVWQEREEQRDRGML"
     misc_feature    22..699
                     /locus_tag="COCCADRAFT_86552"
                     /note="copper, zinc superoxide dismutase; Region:
                     PLN02957"
                     /db_xref="CDD:215516"
ORIGIN      
atgacagtaacagcctttgaaacgatattcgcagtgcccatgacctgtcagtcgtgcatcaacgacatcgagggttccctacatcagttgagtggtatcaacaaagtgactgccaacctcaaggagcaattagtatctgtcgagggcacagcagcaccgtcggccattgtagaggcgattcaagctactgggcgtgatgctgttctccgggggtcgggcaaatcagacagtgcagcggtatgcattctagaatcacacgcgccacaggtggagaacaaggttcgcggcctggtgcgcatggtggaagtttctcctggtatgaccattgtggacttgagtataagagggctgtcacctggaacctatcatgccacagtacgtgagtcgggaaacatttccgagggacctgaatcgactggtgggatttgggaacttggtcagtcacaaaaagagaccaaggcttgtcgaggcatctttggaaccgttcaggttggaaagggtggagtgggatcggtgtttctcgacaagcccatccacatctgggaagtgattgggcgcagcatcgtggttgcgaaagagcaggacggcaagtttgacaagaacgacgcagacacgctagttggggtcattgcacgcagtgcgggcgtatgggataacgacaagacggtgtgttcgtgttctggcaagacggtgtggcaggagcgcgaggagcagcgcgatcgcggtatgctctga
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]