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2021-01-24 06:20:14, GGRNA.v2 : RefSeq release 203 (Nov, 2020)

LOCUS       XM_006791851           11415 bp    mRNA    linear   VRT 24-AUG-2020
DEFINITION  PREDICTED: Neolamprologus brichardi protein argonaute-3
            (LOC102778312), mRNA.
ACCESSION   XM_006791851
VERSION     XM_006791851.2
DBLINK      BioProject: PRJNA232513
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Neolamprologus brichardi
  ORGANISM  Neolamprologus brichardi
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes;
            Cichlidae; African cichlids; Pseudocrenilabrinae; Lamprologini;
            Neolamprologus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_006272022.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 24, 2020 this sequence version replaced XM_006791851.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Neolamprologus brichardi Annotation
                                           Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..11415
                     /organism="Neolamprologus brichardi"
                     /mol_type="mRNA"
                     /isolate="N.brichardi 1_Salsburger"
                     /db_xref="taxon:32507"
                     /chromosome="Unknown"
                     /sex="female"
     gene            1..11415
                     /gene="LOC102778312"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 43 Proteins, and 99% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:102778312"
     CDS             788..3205
                     /gene="LOC102778312"
                     /codon_start=1
                     /product="protein argonaute-3"
                     /protein_id="XP_006791914.1"
                     /db_xref="GeneID:102778312"
                     /translation="
MEIGTTGAVGAQSLFSMPRRPGYGTMGKPIKLLANCFQVEIPKMDVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVTIFGDRRPVYDGKKSLYTANPLPVAPTGVDLDVTLPGEGGKDRPFKVSIKFVSLVSWHMLHEVLTGRSMPEPLELDKPISTNPVHAVDVVLRNLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYEADPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEVIQDLASMVRELLIQFYKSTRYKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKEYQPGITYIVVQKRHHTRLFCADRNERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQVCPTSSPSHMLPAEGSHVSGQSNGRDPQALAKAVQIHHDTLRTMYFA"
     misc_feature    845..1288
                     /gene="LOC102778312"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:293095"
     misc_feature    1319..1468
                     /gene="LOC102778312"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:285861"
     misc_feature    1469..1831
                     /gene="LOC102778312"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1625..1627,1670..1672,1712..1714,1724..1726,
                     1778..1780,1799..1801,1805..1807)
                     /gene="LOC102778312"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1964..3088
                     /gene="LOC102778312"
                     /note="Piwi_ago-like: PIWI domain, Argonaute-like
                     subfamily. Argonaute is the central component of the
                     RNA-induced silencing complex (RISC) and related
                     complexes. The PIWI domain is the C-terminal portion of
                     Argonaute and consists of two subdomains, one of...;
                     Region: Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(2375..2377,2387..2389,2423..2434,2441..2443,
                     2465..2467,2474..2476,2486..2488,2498..2500)
                     /gene="LOC102778312"
                     /note="5' RNA guide strand anchoring site; other site"
                     /db_xref="CDD:240015"
ORIGIN      
ttcctgtcggtgtcagaaaggcaacttcaccatatttagctggcttgccgaagccttgcagagttgatctgtcaaccagactggagatcgtgacacttatcggcgcatacatcgcgctgttgacagctttacttttggcagctgaacgcatactacggaggacgacgtcgtgggtgtacggccctcgggagaagggcccgtatcagcagctgtttttaacgcaggaaaagtagccgtcgtctgacagaattccaactctccgacagcctagctagtcagctagctaattagggttgctttcccgacgttagctttgctgtagatacgaatttatgacgtctcttttaatgatcaggtatcggtagggattcatttggactccgtgaccccgctgtgatgatatcctgacagctcctcaaaccactgtcccccccccccactcgagcctggctagtgagttaacttggctaactagcaggttttcactgccacagcgccgcgttgagcagccagcagctttcgccgtggcagtgaaatccgattggatacgttgaccgagtgcaaacggcggtttgtggagactccgaagaccctcggccggccaagtgaccgtgccggaggccccccctcctcctcctttgacaggacacagagagaccaggaccctcggccactcagcgctgcagaggcggtgcacagccgaaggagacaccggattgaacggaggaagagtcccaaacgtttgacaactgtgatccgggaagtgaaccgggcattgacctcatgaatggaaatcggaactacaggagccgttggggcccagtccctgttctccatgcctcggcggcctggctatggcaccatggggaagccaatcaagctgctggccaactgcttccaggtggagatccccaagatggatgtctacctctacgaggtggacatcaagcctgacaagtgcccacggcgagtcaacagggaggtggttgactctatggtgcagcacttcaaggtgacaatctttggggatcgcaggccagtctacgatggaaagaagagtttgtacacagccaacccactgcctgtggcacctacgggggtggacctggatgtcactctcccaggagagggagggaaagatcggcccttcaaagtttccattaagttcgtgtctctggtcagctggcacatgctccacgaggtgctgactggccgcagcatgcctgaaccccttgagctggacaagcctatcagcaccaaccctgtacacgcagtggacgtagtactgcgaaacttgccctccatgaagtacactccagtgggccgatccttcttctctgctccagaaggctacgaccatcctctgggaggtgggagggaagtttggtttggtttccaccaatctgtgcgccctgccatgtggaagatgatgctaaacattgacgtgtctgccacagccttctacaaagcccagccagtgatccagttcatgtgtgaagtgctggatatccacaacatcgacgagcagcctcggcccctcacagactcgcacagggtcaaattcaccaaagaaatcaaaggtttaaaggtggaggtgacgcactgtggaaccatgcggaggaagtaccgcgtctgcaacgtgacgcgtcgacctgccagccatcaaacgttccctctgcagctggagaatggccagaccgtagagcgtactgtagcccagtacttcagggagaagtacaacctgcagctcaaatatccacatttaccctgtctacaggtgggccaggagcaaaagcacacctacctgcccctagaggtgtgtaatattgtagctggtcaacggtgcatcaagaagctgacagataatcagacctccactatgatcaaagccacagctcgctctgcacctgacagacaggaggagatcagcaggctggtgcgcagtgccaactatgaggcagacccttttgtgcaggagttccagttcaaagtgcgtgacgagatggcccacgtgacggggcgagtgctacccgcccccatgctgcagtacggcggcaggaaccgcactgtagccacgcccagccacggcgtgtgggacatgaggggaaagcagttccacaccggggtagagatcaagatgtgggccattgcctgcttcgccacacagaggcagtgtcgagaagaaatcctcaagggtttcacagaccagctgcgtaaaatctcaaaggatgctgggatgcccatccaaggccagccgtgtttctgtaaatacgcccagggagcagacagcgtggagcccatgttcagacacctgaagaacacctatgccggactgcagctcataatcgtcatcctgccgggaaaaactcctgtctacgcggaggtaaagcgtgtgggagacactctgttgggcatggcgactcagtgtgttcaggttaagaacgtggtgaagacgtcaccgcagactctgtccaacctctgcctcaagatcaatgtgaagctgggagggatcaacaacatcctggtacctcaccaacgaccatcagtgtttcaacagccagttatcttcttgggagcagatgttacacatccaccagccggagatgggaagaagccttctattgcagcagtggtaggtagtatggacgcccaccccagcaggtactgtgccaccgtacgagtccagaggcccaggcaggaggtcatccaggacctggcctctatggtgcgggaactgctgatccagttctacaagtcaacccgctacaagcccacacggatcattttctacagggatggagtttcagaaggccagttcagacaggtgctgtattatgagctgctggccattcgtgaggcctgcatcagcctggagaaggagtaccagccaggcatcacctacattgttgtgcaaaaacgccaccatacacgcctcttctgtgccgaccgcaacgagagagttggacgtagtggaaacattcccgctggtactactgtggatacggacatcacgcatccctacgagttcgatttttacctctgcagtcacgctggaatacaggtctgtccaacctcttctccatctcatatgttgcccgctgagggcagccatgtgtctggtcagagtaacggtcgggacccccaggcgctggccaaagctgttcagatccaccacgacaccctgaggaccatgtacttcgcctgagctacacaaactctccccaaccattgccactcttaacacacacacacacaaccatgcacacctggcatgccagtcaaggaatcctcataggtgcaagtcccagcccccccccaacatgcctaatcaaaaacggacctgacactgtgcagaggaaagcagggaggagggaggggaagaggcacccccacactggactgaggatgcaaaagctgctttaaaaaacaaacaaacaagagagaatctcagcactattatgcaatattaaaccagccaactagtttattttcacccttattaggcaccctctcccctccggttttcactacccctcctatgtgttcgtcccctgttttgtctcctttacttgtggcctagtttgtggctgttcttttccttttctttggcatagtctttgataaatctgcttctttgccttcttcagtacctcaagtcagtttgagcagcagcacttttacattctgtcagtttttgtgtaatttgtttttgatttttctcctatttctttttcttaagtttaggggcagagagagagaaaaaaaaggactcagactctggagttagtaagaggtgtctgatgtagtttgaagcatcaattcattgaccagaggtcctcccagtttgatcttttatttttcctctcgtttcctttcttgttctgtcacttttcattagtgtgtgggcacgataccaccagttgcttgtacagagctacatgttcttttgagcacactgccacttattggcaaagacggatattgccccttaagtcacaaagaggagcagtttcggtggtctcagatcagtttcggatttattcctgaaggttagctgtcacatttaaacggagggcagtttatattatatatcaatttgctgagttgcagccatccatggattgtatttaaagtattattgacactgttatttgagtctggttgctatatttcttctacattatgtgaaacattttaagaatctgattcttaaagaaaaaagaagatttaatcgtgttagcttttgtttttaaatcgccctgcattcatttctctcagtgctttatcttgcctttccccccttgtatctaagacggtggctaaatacagacgatgtcgatggtttcctcttgtgcaataatcagtcgaacgaagggaagaggatttttaggggacttaagcgactcaaaagtacagttttcacatttcatatgaaagcgagtgtccttgaaaggagagaagtttgccacttgcaaggcactttcatgtgtcgctcctccgtgagcagaatgacctgcatgttgtatgagtttgctctcgctgttgggcaaaaagaaaggagaaaaaaaaatatggtgcaactgcagttttggtgatttttcgtgtttttacttgaactgaaggactttgtgcgtctccgtggtttgaggatactttcggatcagtgggcatgattttagaattcctgatcgtcagcttgctaatgagattgatttttcttaattcctaagaattacaaagcttttcacttgacagcagcaaagtggagtataaaggccataaagaggtagtattcaagtgcctgttggaagttaagtgtgtaatcgtcagaagctgtatgagttgtttcagtggggtacaatgatcaaagagcgtacaccaaccagacagcgtgaagcaagaaagtttcacccgatgcctcttattcttctcaataaccgtctactgacttttctatacatctcattcgaattaacctaagatcaatatatttattgtatttgcctgtacagcagtgttagctgttggctttgctttggagcagcattcaagcaaagtaggccaagttgtctttttgcctaatattcaccagacatggatccagctgctacagtgtgttcgtaggcgattgggccggcttcgtgggcacagagttggccttctcccaaactgtttttctttttcttttagatcgattagaaccctaaatctgagtttgggtttaattcctgcccacgcgaccggcccaaagttgggaccggcttcagaacaaagccgaggagtcaagtggacgaccgttagtgtgaagcgtgcgtctgggtaacgggtcaccacgtagctcctctaatgctgatgacctgaagtttgctcgggacgtgtttttaaaagttatctgcactaaaagaagcatgtgtttcaggagtgaacacaggcgcggtgctactctgaattagaatttgaagctgaacctcaatgcgagactttaaacgagcaggcgggatatgtaggcgaggggaaaaaaaactgtaaacctcactcactgaaggacgagaaggctccactgctgcggttgttgaggggggttatagatttatggttttattcgggatagatctactcggagaacttgtaagcggtacaacggcagacgtgtggtcctgcctctgctgttgcattcgactgcctttcacaggctagcctttcagtgtggaagccagtgggttcgagccttcacgatttcactagtatctgaaagcctttttaaaaagccagatcgaaagtatatttgtagattttaaattatgtaatgcacaccacttatttttgctaacagaaaaaaaaatgtagtctaattattaatcttagtaataaatgtatcatgacaagtaatggtttaaaaaaaaaaaaagtataacaaagttttattatcgcaatagactgttgacttgttcttgtgtcactgtataacgtatagtgtatgtgtgaacagtgctggggttgttgaaactagttatgtgtgtttggactgtcatactgttattgatagggatgtggactctaaccgcctcttgctttgatgtttggaaaaaaaaaaacttgcaagatgttgaatgcttcttttttttcttcttcttttgtagatgatcaaacaaagtttttcatagagaggacaaagtgttaacatgctatatcccaaatgcctttcttatcgcagtttttcacaattgctaagactcttttcttaaaaggatcccctgttttctcatactgtgactgaacaacattcacaaaacctctgactcttctggaagtatcaaacaatagcctcaaactgtagaccaaacaatgtttgtagatcatagactgagtcaaacaatgctgagcattcattacgctacatccaaaaatccagcgttctggctgtgtagctccaggaaaaaatgccaataaatgcatatataaaaagcataactctaatagagtttaaatactacccactgtaagtacaagcagtacaggattacacagtgtctgtgggtctgtggataaagtaggtcaaaaggctaagaaacaagcacataacagtatagcgtaagtgtaactgaaagtgaacatgtgatctgttcagctgtgtcacgccagagtgaaaaagagcaactcaacccgttgcatgtgtatttctgggagttccttttttcaagacgcaaaacactgggaggagaaatcttagtgcgctgatatttaacgcagaaaaaacgggtcacctgcttaaccaggtgagctatgctggtgccagatcctgcttatttaaagctgaaactccaaattgacgtctaacacggtgaaacgtgtttaaggtttaagagcgttcgagtgactaaacgggtgcaaaacatggaccgtttggttcagagaacgggatttaatgtcttagcaattcagaaaagctgtgagaaattacaaacctattgtaacaacaaacagtagactaggagggggaagaaaaaaaaaaaaggcgattgatatgttgagctcctgctcttgaattttctcgggtttcttttaactgatgctgacgcctgctccttatcgagaggagagtaaaaggaatgggcatgtgctgtttttctttttaaagtcttggtgatccatttcaaagacacgtgtgatcaaagaatagagaaacaaggtttagtagttctccattcctttgtgttagaaccctggggggaggatttacattggattacaaccaccattgctttcctcagactggtttccttatttgagccacttcacgtgcacgcagatacaaagacgtaagtctgcgacgtggcaaagcctgttatcttattttagcgctctttctttttttgttccaaacatttactcccctcggtctacattccacggccgtacaatctcatccaatcccccagcaaggtgtgaggaaggttaaagctgaaggacaatactgagggatatagtgtgtgtgggtgtgtgtgtgtgttggaaggaatcaaagctcatcagtgagaacttggtgtggcaggttatatggaagttggacgtgtgtgtgtgtgtgtgtgtgtgtttggtgggctgattgactcactatatctctgctgtctgtaatagatgttcaggtggtgtataaacgacaccctcgagggcagttgaacacatgtttacatagcaaatgtgtttgcctcgcttacatttgaaatgtcatcagctcggctttgcaaatattagctagcagagaaatgacctaacatgagcgagaccttttaggggcctgtggaagcgaatgcttaatgggatacaaagatgttattcatgcagccgatttttcttcaacacacagccgtgctacacaaacgtgggaaggtttcgtttgtccttccagttctgctagaaacgactcgttatatttgactttaaactaaaggtacactaatctcacgactgtgtccttttagctcccacttagggtcgctacgacgactgtttacgagagccgtgaattggcgtctttagctgcctggtgaagaaaatgtaacaaattaacttttaaaaggccggtgcctcaatttttaaccgaagtgaaggtgtattctgtctcgaggcgtcaatcagtattcctcattttggttgctctatatttgcagtggaaggtagcgagaaaaagtccacagaaagtgcctttcctcttgatggtgctgtaaattgaaagatgaaatgtaaaaatcaaagacgtagaatctccttttgaaacacacattgcaatgcaggagttgctgcatttctctctctctcacacacacacatgctcacagtaaatggtttttgttttttgttttttgagatggcaatgcagagttgtttttcatgtatttaaagattaagcctacatagtaaaagacattatgccaagtaaatggttgtggttgagctcttgctttctagtgcatttttagtgtcttggaccaatggtgttgttggtacagtggaatgtgtgtttgggtgggttggcggagcgaggtggttgggagtcatagctgacactagcggggtgtgacacagcccagcccacgaatggcaaacatagcacagcactttagagactgccacagtctctgtccctccagtccccttcttcctcccgcccaggaggaggagaggatccagacctcagcgtaaacgaggagacgacgaagggatacgcgttaccaaacgaggcagtcggccattaaaagtgtgcctcgtgctcttgtgactttattggctcggtagagtctgcctgctctcgggtggcgtgttctcgtcaggactgccacttttgacactttgttacagctagggctgggtgtcacaaacgtcactcatcagtacctcctggttttttggaatcggagtttcgaagcaggctagaactttctttttctttttcttttgcactgagggaaagcaacatgcgtgaggaggcagaaaggtgtcttattttttttaaacatgtggttcagaaatgaaatgaacagagccagtgtcagtattgagacttgtctcaagatgcccagccctagtagcagccccatggcgttctttcatcttagagcaatgccctgccatgtgtcttgtccctgtcggagggaatgagtgcccagcagtatcctcgtcttgagccggtagggattcgactgaaaaaccgagtatggtctgtagttctgtgggtaccttttcagtccagggggtgaaatctttctattacaagaaatctcaaaaaacactgcacctcacttaccttggtatgctgcatatgttatactacatgaaagaaaactgcaaattgcttttatgatatataatgcttgagtaatgcctgattgcgatattcttatacggtaactattttagattcgaaataagtagaactgtaaaagatattcttgttttgtcttaacacttatccaattttgaaatattgttcttgagccgacttttattttgttgtcctatttaaatgtgttgttctttaaatatatatatgaaatatatatatgcggaatattttatggtgtatttattgagtccgttagagcggctggagtgtccgcatcaatcttgcagcgtggcgggggcggagccaggagggagaagccttgagcccctccccttccatgttgacgccttattctcctagacacgcaagcacaacaatatggagggggggtgcggggtggaggaaagggcggcggcggcggatttcgacttgttccaggtcgacttcctcctcctccccttttccaaatattcttaaccctcccatcttcttttaccacccgtgaaggccagacgccagccccctacgtgtcgcagctcatctctgacgaagggaaccatttctgaaccacactgacttgtgtcgaatagctgacttttcatcccaagctgctaaattggtacgttagccatgtaaattccctgagccagtacagagcaagtagtagagtgtaaaataagtttaaaaaaaatgcggggggggaaagaaggaagggtgttggaaaggcaaaattcattgaattacagtgaaatgttttagcaaaggcgttgcttctttcctctttaaatgtctcctgttttgttttgttttgtttttccttgtgccagaatattttacagcaggaccaggtctcattccacaggaaaacacatgcctcagccttaagtgcgtccttacgtaatagaaatctgtgtgacttttgcaatgcctgtgctgtgtcgggtggcctaccaagaaaactagcctacgtacttgatctgccctgatatctccaactggcatactcatctgttctcgcatgtaaaccactaacattgctacacaacgtagagcgctctgatgaatgaacactgctctgtttaatatgtactgatgtcagaacgggagccaggtctgggtcaaactgcctttggaaacccttttcagtatttggtgttacctgttgagcggtgcctacagcccgagggcagtttggatatgtacgtatgctcattagattttatgcacttgcctgtattttgtaagctcgttgctcggttgacacagtcattgtcgctgattgcaaatccaaagaaggatccaaagaacagtttgacgcaggccttacacgagaaccaggcggtttccccactgtgccggattacagagacctgtgcctgtacaatgaaccaaggatgaattgtgttgtgatgatttttttttttctttttttcttttaattatctgttggttgtccctcacctcatcggaggatcagagacattgaccttttgagtgttgtcaatcttccaaagcaagaaaagccctctgtccttttaaaccgaatggcttttggtttattcaatgtttaccgtaatgtttactcccatggctatctgatgttgaacctgttttcattacattagcattccaaaatgacttcaaaccaaaaaccgctgaagagattaggctcctgacgccgtttaccttgtatacacttaatggttttgaagacagattattcgagagtggccaaggatatcaaacattttgggtactctgattgttccgatgcatcgtcactcttgtgtcagtcttatttcaaactaaagatcttgagctctgatacctctgagtgaggcaccagcaaactgacgtgtacgttgaaccttcaccaccagatcatccatgtctcagcctctgtattttttgcaaaaggctgtgttgtaccaacggctgtattcctttcagttttaattgtctttcttttgttactctttctctcttataggttgttggcctttttagtgttgctttgcttcagtttgaagtgtatctttgactaatacttgcaataaaaatgctttgcttta
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]