2024-04-25 20:33:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_006367038 2703 bp mRNA linear PLN 05-JAN-2016 DEFINITION PREDICTED: Solanum tuberosum high mobility group nucleosome-binding domain-containing protein 5-like (LOC102592676), transcript variant X3, mRNA. ACCESSION XM_006367038 VERSION XM_006367038.2 DBLINK BioProject: PRJNA225997 KEYWORDS RefSeq. SOURCE Solanum tuberosum (potato) ORGANISM Solanum tuberosum Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_006239635.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 5, 2016 this sequence version replaced XM_006367038.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Solanum tuberosum Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2703 /organism="Solanum tuberosum" /mol_type="mRNA" /cultivar="DM 1-3 516 R44" /db_xref="taxon:4113" /chromosome="Unknown" gene 1..2703 /gene="LOC102592676" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 44 samples with support for all annotated introns" /db_xref="GeneID:102592676" CDS 268..2394 /gene="LOC102592676" /codon_start=1 /product="high mobility group nucleosome-binding domain-containing protein 5-like isoform X2" /protein_id="XP_006367100.1" /db_xref="GeneID:102592676" /translation="
MYKQSPSRNHRSKGVKVKNVLQICLLVAVCFWLIYQVKHSHDKKKEFDEDDAKSSIKSGSSNELMKLGRKDLPRIEGLDTVDEKHREEPEDETVEEEEEGNKPEEEDLEENNTKEKNGEHREDGEDEVDDHDQEKNDERREDGEDDHDQEKNDEHREDGEDEVDDHDQEKNDERREDGEDDHDQEKNDEHREDGEDEVDDHDQEKNDERREDGEDDHDQEKNDEHREDGEDEVDDHDQEKNDERREDGEDDHDQEKNDEHREDGEDEVDDHDQEKNDERREDGEDDHDQEKNDEHREDGEDEVDDHDQEKNDERREDGEDDHDQEKNDEHREDGEDEVDDHDQEKNDERREDEIDDHDHEKSDVERDQEVDAVDEDKERGEDNEKETEVNDSQVEEENSLEDHDHDEDSSSSHEAREEHYKADDASSAVTHDTVVTTTENESGKVEQEVEHAAEAKSEDGVNNIMQINASKNTTAALKEENGKADEEDSPPNTTNSEEKHDDPILSTAADNSVSNSTRTEGLTDNSESRTYSTELSTQTHDLLQNGTQATVGDTTSSNMSTSTSQQSSNSADTVDDNQIDSNLTFSSKNDELDSIPVDSSNVSGDTEPSLAEKVVQGNATAEAVDNEGLPLNDNNGTEVEKADTSSEETGTTDEDVDASIVENLGEVQDDLIDTSDSSTHLEEKHVRTDVETLPEIQTEGSMEDAAAE"
misc_feature <586..1851 /gene="LOC102592676" /note="Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]; Region: MDN1; COG5271" /db_xref="CDD:227596" ORIGIN
ccgtccaaatacagagcagagagcagagagtagagagtagagagtagagagagtgtagatgctttgtttgtagatccgaataagaaagagaagtagaagaagaattataggtgggaaggactccttcaattcaatttcatcattcaatatatctaagaaaactctttgactaagctattactttcccttttttccatttcttggaactataagcttctctactttcagattcaataaatctttgcagaacaggtagtaaaactcaccatgtacaagcagtcacctagtaggaaccatagatccaaaggtgtcaaggttaagaatgttttacaaatctgtctgttggttgctgtttgcttttggctgatttaccaggtcaagcactcacatgataaaaagaaagaatttgatgaagatgatgccaagtcttcaattaagagtggaagtagcaatgaacttatgaaacttggaaggaaagatctaccacggattgagggattagatacagttgatgagaagcatagggaggaaccagaagatgaaacagtggaagaagaagaagaagggaataagcctgaggaagaagatctagaagagaacaatactaaagagaagaatggtgaacacagagaagatggagaagatgaggtcgatgatcatgatcaagagaagaatgatgaacgcagagaagatggagaagatgatcatgatcaagagaagaatgatgaacacagagaagatggagaagatgaggtcgatgatcatgatcaagagaagaatgatgaacgcagagaagatggagaagatgatcatgatcaagagaagaatgatgaacacagagaagatggagaagatgaggtcgatgatcatgatcaagagaagaatgatgaacgcagagaagatggagaagatgatcatgatcaagagaagaatgatgaacacagagaagatggagaagatgaggtcgatgatcatgatcaagagaagaatgatgaacgcagagaagatggagaagatgatcatgatcaagagaagaatgatgaacacagagaagatggagaagatgaggtcgatgatcatgatcaagagaagaatgatgaacgcagagaagatggagaagatgatcatgatcaagagaagaatgatgaacacagagaagatggagaagatgaggtcgatgatcatgatcaagagaagaatgatgaacgcagagaagatggagaagatgatcatgatcaagagaagaatgatgaacacagagaagatggagaagatgaggtcgatgatcatgatcaagagaagaatgatgaacgcagagaagatgagatcgatgatcatgatcatgagaagtctgatgtagagcgtgatcaagaagtggatgctgttgatgaagacaaggaacgaggagaagataacgagaaggaaactgaagtgaatgatagtcaggtggaggaagaaaattcattggaggaccatgatcacgacgaggactcaagcagttcacatgaggcacgtgaagaacattataaagcagatgatgcttcaagtgcagtgactcatgatacagttgtaactacaactgaaaatgagagtggtaaggtagagcaagaagtagaacatgctgctgaagccaagagtgaagatggtgttaataacattatgcagatcaatgccagcaaaaatacaacagcggctttgaaggaggaaaatggtaaagcagatgaggaagacagtcctccaaacacaacaaacagtgaagagaagcatgatgacccaatcttatccactgctgcagacaattcagtttcaaattccacaagaacagaaggattgactgataattctgaatcgagaacctactcgacagaactgagcacacagactcatgaccttctacagaatggcacccaggccacagtaggggatacaacgtcttccaacatgtcaactagtacttcacagcaaagcagcaactctgcagatacggtggatgacaatcaaattgattctaatttaacattttcctctaaaaacgacgagttagactcaataccggtcgattcctcgaatgtgtctggtgatacagaaccttccctggcagaaaaagtcgtccaagggaatgcaactgctgaagcagtagataatgaggggttgcctttgaatgataacaatggaactgaggttgagaaggcagatactagcagtgaagaaaccggaactactgatgaagacgtggatgcatcaattgttgagaatttgggagaagttcaagatgatctgattgatacttctgattcgtccacccacttggaagagaaacatgttcgcacagatgtggaaactcttcctgaaatacaaactgaaggaagcatggaagatgctgcagcagaatgataactgtacaattaaacaagtagtgtgtttagttttcgtgatgagttttcacacttccgtttactattattcagtttcacaaatgtgcaaaattcataagctgtagaccatattaatgttgcaggcataatataggcaagagtgaagggctccaacttgtataatcgtttctactttctagcctctttagaacaaagagtgtcttccatttttctgtttaatctattttctatatagattgtgcttctgttacaaaacttgtgtagtgtattggaacagatatgctatgttttgacttagtggcttgaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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