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2024-03-29 22:57:35, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_006359188            1742 bp    mRNA    linear   PLN 05-JAN-2016
DEFINITION  PREDICTED: Solanum tuberosum putative dual specificity protein
            phosphatase DSP8 (LOC102603222), mRNA.
ACCESSION   XM_006359188
VERSION     XM_006359188.2
DBLINK      BioProject: PRJNA225997
KEYWORDS    RefSeq.
SOURCE      Solanum tuberosum (potato)
  ORGANISM  Solanum tuberosum
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; asterids; lamiids; Solanales; Solanaceae;
            Solanoideae; Solaneae; Solanum.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_006239216.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 5, 2016 this sequence version replaced XM_006359188.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Solanum tuberosum Annotation Release
                                           101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 6.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1742
                     /organism="Solanum tuberosum"
                     /mol_type="mRNA"
                     /cultivar="DM 1-3 516 R44"
                     /db_xref="taxon:4113"
                     /chromosome="Unknown"
     gene            1..1742
                     /gene="LOC102603222"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 ESTs, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 83 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:102603222"
     CDS             512..1546
                     /gene="LOC102603222"
                     /codon_start=1
                     /product="putative dual specificity protein phosphatase
                     DSP8"
                     /protein_id="XP_006359250.1"
                     /db_xref="GeneID:102603222"
                     /translation="
MYIEEEKGEELETGKEEMVVGGVIEKAEKLSVSGKVLCSSGSSGNNAIVVLDVRRVMVGVGARALFYPTLLYNVVRNKIQVEFRWWDWIDEFVLLGAVPFQSDVKRLKELGVSGVVTLNEPYETLVPTSLYEAHGIRHLVLPTRDYLFAPSLNNICQAVEFIHENASNGQSTYVHCKAGRGRSTTIVLCYLVKYKQMTPNDAYNYVKSIRPRVLLASTQRQAVQDFYHLMVKKSYSSTPLTSMIPRSSIFSRRNLLAFDDGAVVVITETDLDGYNSSLDSRVAGSELWADLNLIYRVRVAGGAALARLSCMWLRCHTDQKIPNQKVTAESKQLESFTVDIHVFS"
     misc_feature    764..1192
                     /gene="LOC102603222"
                     /note="protein-tyrosine phosphatase mitochondrial 1;
                     Region: PTPMT1; cd14524"
                     /db_xref="CDD:350374"
     misc_feature    order(764..766,803..805,947..949,1037..1057,1157..1159)
                     /gene="LOC102603222"
                     /note="active site"
                     /db_xref="CDD:350374"
ORIGIN      
attaaaatgtttgaaatttcgtggcacacatatacagaggggacaatctgaattctcaagtagagtattgtctagggttcgtcaattccaagctatcttcactcttttaccgattccgattcaattgcttttgcaaatcgagggtctcaactatctccgtcagatcttggccgtccgattgatacctttttctctgaatatggtcgaaatttgcaagccttatattgatttcaatcaaagttcgaacctttgttgtaatttcagcgactcagatccgtttcacagataatttgcctaattttgagagaagggtccggtttgtttgtatgttgattttgaagagagtcgtctcttagtttgaaattttaggtggaagtttgtggaatttgcactttgtttatcagtgcgttgtgtaaattttctttagtttgtgtgttctgcatcttgtttttccctctttatttgatcagtgggttgtatataatattttttttgtcttccaagtattattatgtatatagaggaagagaagggagaagagttggagactgggaaggaggagatggtggtgggtggagtgatagagaaggcagagaaattatctgtttctggtaaggtgttgtgttctagtggtagtagtggcaataatgctattgttgtgttggatgtaaggagggtcatggttggagttggggctcgagccttgttttacccgacacttctctacaatgttgttaggaacaagattcaggtagagtttcgatggtgggactggattgatgagtttgtgttattaggtgctgtccctttccaatctgatgtgaaaaggctaaaggagcttggtgtctccggtgttgtcaccctaaatgagccatatgagactttagttccgacatctttatatgaggctcatggtattcgtcatttggttctcccaacaagagattacttatttgccccatctctgaataatatatgtcaagcagtagagttcatccatgaaaatgcttccaatggacaaagtacatatgtgcactgcaaggctggtcgaggacgtagcacgaccattgtcttatgctacttggttaagtacaagcagatgacaccaaatgatgcatataactatgtgaagtcaattcgtccaagggtgcttttggcctctacccagcgacaggctgtccaggatttttaccatctcatggtgaaaaagtcatacagttctacccccttgactagtatgatcccacggagctcaatcttctccagacggaatttgctagccttcgatgatggtgctgtagttgtgataaccgaaacagatctagatggatataattcaagccttgactctagggtggctggatctgagctttgggcagatttgaatttgatttacagggttcgagttgctggtggggcagccttagcaagactctcctgtatgtggttacgttgccacaccgaccagaagattccgaatcagaaggtgactgcagagagcaagcagctggaaagttttactgtagatatacatgtgttttcttaagttaataagttgtacatatttcttctgtatatataaaatattaagatgctacaagctaaggtgtctactatttcagcttactctaccataaaacctcgacgttctctatgtaaatacgatatacttctcaagttgcaaatgagaagtttgagtatatgtatatatatatagctctttatgcgaaatttcttaacaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]