LOCUS       XM_006249502            3732 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus spliceosome associated factor 3, U4/U6
            recycling protein (Sart3), transcript variant X2, mRNA.
ACCESSION   XM_006249502
VERSION     XM_006249502.4
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086030) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006249502.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3732
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..3732
                     /gene="Sart3"
                     /note="spliceosome associated factor 3, U4/U6 recycling
                     protein; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 ESTs, 105 long SRA reads, 1
                     Protein"
                     /db_xref="GeneID:304582"
                     /db_xref="RGD:1311646"
     CDS             480..3023
                     /gene="Sart3"
                     /codon_start=1
                     /product="squamous cell carcinoma antigen recognized by
                     T-cells 3 isoform X2"
                     /protein_id="XP_006249564.1"
                     /db_xref="GeneID:304582"
                     /db_xref="RGD:1311646"
                     /translation="

MARQKMSEIFPLTEELWLEWLHDEISMAVDGLDRERVYELFERAVKDYICPNIWLEYGQYSVGGIGQKGGLEKVRSVFERALSSVGLHMTKGLAIWEAYREFESAIVEAARPIAAFLSPSDREQTFDSQLERVHSLFRRQLAIPLYEMEATFAEYEEWSEEPIPESVLQSYQKALGQLEKYKPYEEALLQAEAPRLAEYQAYIDFEMKVGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLVLSVHSRAVRNCPWTVALWSRYLLAMERHGLDHQMISATFENALSAGFIQATDYVEIWQVYLDYLRRRVDFRQDSSKELEELRSMFTRALEYLQQEVEERFSESGDPSCLIMQSWARVEARLCNNMQKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHRAVQCTSDYPEHVCEVLLTMERTEGTLEDWDLAIQKTETRLARVNEQRMKAAEKEAALVQQEEEKAEQRKKVRAEKKALKKKKTRGADKRKAGEDDDERECGEEEEEQPSKRRRMENSLASGVASAKEEETKLSGKCLTIDVAPPSKQKEKAASLKRDMPKVAHDSSKDSVTVFVSNLPYSIEEPEVKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSAQQALDLDRKNVEGRPMFVSPCVDKSKNPDFKMFRYSTTLEKHKLFISGLPFSCTKEELEGICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVLKMDGMTIKENVIKVAISNPPQRKVPEKPEVRTAPGAPMVPRQMYGARGKGRTQLSLLPRALQRQGAAPQAENGPAPGLAATTSVATEAPKMSNADFAKLLLRK"

     misc_feature    489..>1517
                     /gene="Sart3"
                     /note="Pre-mRNA 3'-end processing (cleavage and
                     polyadenylation) factor [RNA processing and modification];
                     Region: RNA14; COG5107"
                     /db_xref="CDD:227438"
     misc_feature    2247..2468
                     /gene="Sart3"
                     /note="RNA recognition motif 1 (RRM1) found in squamous
                     cell carcinoma antigen recognized by T-cells 3 (SART3) and
                     similar proteins; Region: RRM1_SART3; cd12391"
                     /db_xref="CDD:409825"
     misc_feature    2529..2771
                     /gene="Sart3"
                     /note="RNA recognition motif 2 (RRM2) found in squamous
                     cell carcinoma antigen recognized by T-cells 3 (SART3) and
                     similar proteins; Region: RRM2_SART3; cd12392"
                     /db_xref="CDD:409826"
     misc_feature    2763..2939
                     /gene="Sart3"
                     /note="LSM-interacting associated unstructured; Region:
                     LSM_int_assoc; pfam16605"
                     /db_xref="CDD:465192"
     polyA_site      3732
                     /gene="Sart3"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

aggtgtgagcgagagcgatggggatgaggaggacgccgccatggcttcctccgccgagagctccgccggggaggacgagtgggagtacgacgaggaggaggagaagaaccagttggagatcgagcggctggaggagcagtgcctcctgttgggcaaacccagctgtaaaccattgtgccagaagaccaaaatctagtgcaccccagttgttcatgggacaaggagaagatatggaggagtgggaccaaaaagatgaagcctgttctcgtgaggaaacgaggctcagcaaatggtaggatctgactcggctgaattcacacaagtgggccttgatctcttatggtcatctgtggtccagatacccccctggaggtgcggtccctcagtgatttgtgctgtccatcaatggctatgattacaactgccacgtgggactcatcaggctgttgcggctggaaggcgagctcaacaaagtgaggatggcccgacagaagatgagcgagatcttccccttgactgaagagctctggctggagtggctccacgatgagatcagcatggctgtggacggcctggaccgcgagcgtgtctacgagctctttgagagagccgtgaaggactacatctgtccgaacatttggctagaatatggccagtactcagttggtggcattggtcagaaaggtggcctagagaaagttcgctctgtgtttgaacgagccctgtcatctgttggcctacacatgacaaaaggtctggccatctgggaggcctaccgggagtttgaaagtgccattgtggaagctgctcggcccatagctgccttcctttccccttctgaccgggaacaaacctttgattcacagctggagagagtgcacagcctcttccggcggcagctggcgatcccactgtacgagatggaggccacctttgcagagtatgaagaatggtcagaagagcccatacctgagtccgtacttcagagctatcagaaggcactggggcagctggagaagtacaagccttacgaggaagcactgttgcaagcagaggctccacggctggcggagtaccaagcttacatcgactttgagatgaaagttggggatcctgctcgcattcagttgatctttgagcgtgccctggtggagaactgcctggtgccagacttatggatccgctacagtcagtacctagatcgacagctgaaagtaaaggatttggttttatctgtacacagccgagctgtgaggaactgcccatggacagttgccctgtggagtcggtacctcctggccatggagcgacacggactggaccatcaaatgatttccgcgaccttcgagaatgctctgagtgccggattcatccaggccactgattatgtggagatctggcaggtgtacctagactacctgaggagaagggttgacttcagacaagactctagcaaagagctggaagagctgcggtccatgttcacgcgtgctctggagtatctgcagcaggaggttgaggagcgtttcagcgagagcggagatccaagctgcctgatcatgcagagctgggcccgggttgaggctcgcctgtgcaataacatgcagaaagctcgagaactctgggacagcatcatgaccagagggaatgccaagtacgccaacatgtggctggagtactacaacctggaaagggcacacggtgacacacagcactgtcggaaggctctgcaccgagctgtgcagtgcacgagcgactaccctgagcatgtctgtgaagtgctgctcaccatggagaggacagaagggaccttggaagattgggacctagccattcagaagacagagacgcgcttggctcgtgtgaacgagcaaaggatgaaggctgcagagaaggaagcagctcttgtgcagcaggaagaagaaaaggctgagcagcggaagaaggtgcgggcggagaagaaagccctgaaaaagaagaagacgcgaggtgcagacaagcgcaaggcaggcgaggacgatgatgagagagagtgcggtgaagaggaggaagaacagccttccaaacgcagaaggatggagaacagcttggcctctggagtggcttcagctaaggaggaagaaacaaaactttccgggaaatgcttaacaatagacgttgctcctccttccaagcagaaagagaaggccgcctcccttaagcgggacatgcccaaggtggctcacgacagcagcaaggacagtgtcactgtctttgtcagcaacctgccctacagcatagaagaaccagaggtgaagctcaggccgctctttgaggcctgtggggaagtggtccagatcaggccaatcttcagcaaccgtggggacttccggggctactgctatgtggagtttaaagaggagaagtcagcccagcaggccctggatctagacaggaagaatgtggaaggaaggccgatgtttgtgtccccctgtgtggataagagcaagaaccccgattttaagatgttcagatacagcaccaccctggagaaacacaaactcttcatctcgggcctgcccttttcctgcaccaaagaggaacttgaaggcatttgtaaggctcatggcactgttaaggacctcaggctggttactaacagggccggcaagccaaagggcttggcgtacgtggagtatgagaatgagtcccaggcctctcaggcagtgctgaagatggatggcatgaccatcaaagagaacgtcatcaaagtggcgatcagcaacccccctcagcggaaagttccagagaagccagaagtgaggacagccccaggagcccccatggttccccggcagatgtatggagcgcgcgggaagggacggacccagctctcgcttcttcctcgggctctgcagcgccagggtgctgctcctcaggctgagaacggcccagctccggggctggcagccaccacctctgtggccactgaggctcctaagatgtccaatgccgattttgcgaagttactcctgagaaagtgagcaggactctgagatggaatgccttacctgctccttcatgctggccaggctggctgctgtgggccctgggcacagaagggctgggcactcaaacctgcgtgcccaccgatttctcctccggtgtagatgggaagggagagcctatgttgagcatggcggtgaggagtgttccctcacattgagggcggaggccgactgctctacgggctgtcccacggtacgttagtgtcctaacaaggagggactcagctttcgaggcctacttgtcctgatactttcaccgcctctggccctttttctacgaaccccctccccggccctgcacagcacgcgtgcccatcactctttagtgtgaaaggtggagtggaggagccgcactcatcagagtggcctgttcagtgaagtgcccgagggacatcacagaaggctcgcttgatgggttttgtccaaagagcctatgagtttttctattatgtatttgtaattgacattttgactgttttatgttccctaaacgtggggagtctgcaacacttgttcctaggaattgtgtgtgccacccgctgtgtgtgccacccactgtggcccattttctttgcctgatgactgaagacctacgccctctgctcaaacactcatgcctggtgccgtgtccagtgcagagtgagttcccatttagttctgtttattaaactgaagttcttacaga

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