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2020-04-07 23:08:23, GGRNA.v2 : RefSeq release 99 (Mar, 2020)

LOCUS       XM_006208192            5582 bp    mRNA    linear   MAM 22-NOV-2019
DEFINITION  PREDICTED: Vicugna pacos NRDE-2, necessary for RNA interference,
            domain containing (NRDE2), mRNA.
ACCESSION   XM_006208192
VERSION     XM_006208192.3
DBLINK      BioProject: PRJNA221631
KEYWORDS    RefSeq.
SOURCE      Vicugna pacos (alpaca)
  ORGANISM  Vicugna pacos
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Tylopoda;
            Camelidae; Vicugna.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_021964165.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Nov 22, 2019 this sequence version replaced XM_006208192.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Vicugna pacos Annotation Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5582
                     /organism="Vicugna pacos"
                     /mol_type="mRNA"
                     /isolate="Carlotta (AHFN-0088)"
                     /db_xref="taxon:30538"
                     /chromosome="6"
                     /map="unlocalized"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
     gene            1..5582
                     /gene="NRDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 9 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 39 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:102539179"
     CDS             75..3572
                     /gene="NRDE2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2"
                     /protein_id="XP_006208254.1"
                     /db_xref="GeneID:102539179"
                     /translation="
MALFPAFAGVSEAPDSGSSRKELDWLSNPSFCVGTITSLSRQTEEATALVPEGSPLTRSPLKSEPSDESDSSRKPRRASRKKKKEKKKKRKHQHHKKTKRRRGQSSSSGSEPYTDSEEDRPSRSVRDSKTESEKPNQENNAAADTGRHSVWLEDIQTLTGETFRTDKRPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCVSWEGTSTEKKRSHKRVERYFTRKNVGLMNIDGVAVSGKTEPPSSEPLSFIPVKDSEDVVSPVTTWLNPLGIYDLSTTQWLQGQGPSEQESKQPDPQPGRENAILKAKVEDFNRRVRENPRDVQLWMAFVAFQDEVMRSPGLYAAEEGQQEKQKRSLRLVLEKKLAILERAIESNQSSMDLKLAKLQLCTAFWEPPTLLKEWQKLIFLHPNNTGLWQKYLLFCQSQFSTFSISKIQSLYGKCLSTLSAVKDGSILSHPELPGTEDAMFALFLQQCHFLRQAGHAEKAVSLFQAMVDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRAGEKGARGWRAWMHQQERGGWVVVSPDDDDDEPEDDDQEIKDKTLPRWRIWLAAERSRDQRHWRPWRPDKTRKQTEEDCEDPERQVLFDDIGQSLIRLSSPDLQFQLIAAFLQFLGVPSGFSPPTSCLYLAMDENSIFDNGLYDEKPLTFLNLSFSGISCVGCTDQLGCRRWTRGHGREGEEFIRNIFHLVMPLFSGQERSQLCFSWLQYEIAKVIWCLHTKNKKRLKSQGKNCKKLAKNLLKEPDNRNSFCLWKQYAHLEWLLGNTEDARKVFDSALSIAGSRGLRDHELCELSLLYAELEVELLPDAGGAATARAVHILTRLAENGPCGPCTGQVLGVHILKARKAYEHALQDCLGESCISDPTPTESFNRLISLVKCFMLFQYLTVGIDGAVRIYEQVFAKLKGSVSPEGSGLEVSARPRSLSQVLEAVTLMHTSLLRFHMKISIYPLAPLREALSEALKLYPSNPVLWRAYIQIQTKSHSASKTRRFFDAVTRSAKPLEPWLFAIEAEKMRKRLVETVQRVDGREVHATIPETGLTHRIRALFDNALRSDSGSRCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKVLYLDAVEYFPDEMQEILDLMTEKELRVRLPLEELELLLED"
     misc_feature    1014..2012
                     /gene="NRDE2"
                     /note="NRDE-2, necessary for RNA interference; Region:
                     NRDE-2; pfam08424"
                     /db_xref="CDD:285605"
ORIGIN      
cgcaaaggccttactaccggcctccgctccgggcgccatttctgtggcgtgaaaaggcggcgcggcctgtgatcatggcgctgttccccgcgtttgcgggcgttagtgaggcgcccgatagcgggagctccaggaaagaattagactggctgagcaacccaagcttttgtgttggaaccataacatctctgagtcgacaaactgaagaggccacagcccttgttcctgaagggtcaccactgacaaggagtcctctgaaatcagagccttcagatgaaagtgacagcagcagaaagcccagacgagcaagcagaaagaagaagaaagagaaaaagaagaaaaggaagcatcagcaccacaagaaaaccaagaggagacgtgggcagtcgagtagcagtgggtctgagccatatactgattctgaagaggacagaccttcccgaagcgtcagggacagtaagacggagtcagagaaaccaaatcaagaaaacaatgctgctgctgatactggacgtcactctgtttggcttgaggacattcagactctgacaggagaaaccttcagaacagataagaggccagatcctgcaaactgggagtacaagtccctttaccgaggagatatagccagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcaatgtgtatcttgggaggggacgtccacagaaaagaagcgttcacacaagcgtgtcgagcgctatttcacaaggaagaatgtgggattaatgaacattgacggagttgccgttagcggtaaaaccgaacctccgtcatccgagccactctcgtttatcccagtgaaggactcagaggatgtggtttctcctgttacaacctggctgaaccctctggggatttacgatctatccaccacgcagtggttgcaaggacagggtccttcagagcaagaatccaagcagccagacccacagccaggcagagagaatgcgattctcaaggccaaggtggaggattttaacaggagggttcgggagaatcctcgggatgttcagctgtggatggcgtttgttgcttttcaggacgaggtcatgagaagtcccggcctgtacgccgcggaggaaggacagcaggaaaagcagaagcggtccctgcggctggtcctggagaagaagctggccattctggagcgggccatcgaaagcaaccagagcagcatggacctgaagctcgccaagctgcagctctgcaccgcgttctgggagcccccgacgctgctcaaagagtggcagaaactgatcttcctgcatcccaacaatacaggcctgtggcagaaataccttctgttttgccagagccagttcagcaccttttccatatcaaaaattcagagtctgtatggaaaatgcttgagtacgttgtctgccgttaaggacggcagcatcttatctcaccccgagctgcccggcaccgaggacgccatgtttgctctctttcttcagcagtgccacttcctgcggcaggccgggcacgcggagaaggcggtctctctgttccaggccatggttgacttcaccttcttcaaacccgacagcgtgaaagatctgcctacgaaaggacaggtggaattctttgagcccttttgggacagtggagagccgcgggctggggagaagggcgctcgaggctggagagcgtggatgcaccagcaggagcggggcggctgggtggtcgtcagcccagatgacgatgatgacgaaccagaagatgatgaccaggaaattaaagataagactctgcccaggtggcggatctggcttgctgcagagcggtcccgagaccagaggcactggcggccgtggcgccccgataagaccaggaagcagaccgaggaagactgcgaggatccagagagacaggtgttgtttgatgatatcggacagtctctgatccgactttccagcccggatcttcagtttcagctgattgcggcctttctgcagttcttgggtgtgccttccggcttcagccctccaacctcctgcctctatctggccatggatgagaacagcatcttcgataatggactttatgatgaaaagcccttgacttttctcaacctttcattttccggcatcagctgtgtcggctgcacggaccagttgggatgccggcgctggaccaggggtcatggtcgagagggcgaggagttcatccgcaacatcttccaccttgtgatgcctttgttttcaggccaggagcggtctcagctctgcttctcttggttacagtatgagatcgcaaaggtcatttggtgtctgcacaccaaaaacaagaagagattaaagtcacaaggaaagaactgcaaaaaactagccaagaatctcctcaaggagccagacaaccgcaacagtttttgcctctggaagcagtacgcgcatctggagtggttgctcggcaacacagaggacgccagaaaagtatttgattcggccctcagcatagcggggagcaggggactgagggatcacgagctctgtgagctcagcctcctgtacgctgagctggaggtggagctgctgccagacgcgggaggggccgccacagcgcgggctgttcacatactgaccagactggccgagaacgggccctgcgggccctgcaccggccaggtcttgggcgttcacattttgaaagcccggaaggcttatgaacacgcgctgcaggactgtttgggtgagagctgtatctccgatccaacccctaccgagtcctttaaccgcctgattagcttggttaaatgcttcatgctcttccagtatttgaccgtagggatcgatggtgcggtgcggatatatgagcaagtatttgcaaaactgaagggctctgtttccccggagggctccggcctggaggtcagtgccaggccccggagcctgagccaggtcctcgaggccgtcaccctgatgcacacgagcctgctcagattccacatgaagatcagcatctacccgctggctcctctgcgagaggctctctcggaggctttaaagctgtatcccagcaacccggttctttggagggcgtatatacagattcagactaagtcccacagcgccagtaagaccagacggttcttcgatgctgtcaccaggtctgccaaacccttggagccatggttgtttgccattgaagctgagaaaatgaggaagaggctggtggaaactgtgcagagggtggacggcagggaggtccacgccaccatcccggagaccggcctgacgcatcggatcagagccctgtttgacaacgcgttgcggagtgacagcggcagccggtgccccttactgtggaggatgtatttgaattttttggtttccttaggaaataaagaaagaagcaaaggtgtgttctacaaagcacttcagaactgtccctgggcaaaggtgctgtacctggacgccgtggagtacttccccgatgagatgcaggagatcctggacctgatgacggagaaggagctccgggtgcgcctgccgctggaggagctggagcttctacttgaggactagagacctggaggggagtggggagcgtgtcttcgaggccttgggacctgtcctgtccgagccagaatgaaccaggagatggtgacacatgccttcgagcgtgtgtgctgagacctctgcctttgacatttgtttcttggtaatttgtgtctgggttgtcagtctctcacctcttgcactttttttgcatgtgcaagtgacacgaaagctgttgtcttacatattatatatgtgaatatgtgtatatatgtgcatagacaaggatcgtgtcaggtggtaactgagcctggcgtggccggtgtacgaattcttgttcggtccgctgttgccctgcccagccagtgccagccctgcccgggtgaatatacgttcctgataggcatccttgctgctcttgcagttgagataagaaaggtctggttaactcggtactaggacctgctccaccaggccttatcctcagaccagagcagtggggagtcacttagaacttgatgttctcacctgtatcagatgtgttcaaagttctcatttttccctaagccctgctctgtgatgcctccaaccacagacccagcagctagcatcacctgggggccttttagaaatgcagtatctcaggccacaccctggccctctgagtcagaaccggtgctctaacgggacccctttcaggggacttgtgtgtacatcacagtgtggaaagcactgccccaaataaggaccctgctgcaggggaggtcgccagcagccactatggccgagtggaggacggagccagccccttcccagcagatccagccctgcctgtgcgacgtgccgaaggtacgcgttcagcgtgcgtgtcagctcagcttaagatgtggaggcccaggccggctatgtactcattctgattctgaggctgtaacatttgactgagcgaaactaacttccctgaggtcctgctttaaaaaaaatggacagtttttctcggctttttaaaaaaaaaaatcatgctgcctagaaccgctgaaagcacgtttctttggcaccttatcccagaagagccagtgttgtggaacaaagttgtggctagaaactgatggatgtgggttgggtaaagaaggggaggacagcacagctgagcattttctagagagcaactcagggcccccagggaagctgcccgccagccgaggcgaggcttaccttggtctgccccacttcctggctgtaagactgaactggccagaaaggagagagaagagctggaaacagagaaagtcaagaggaagctctgacacatctttgagctctcgggagggatgaggtttctcaactcgggaacaagggatgttggggttgccatgagattctgcaaccctgacctgagactccttttagaaacccccggtctcctagcgacaccagtacctctttcctgtccccagcatgccgagaactcatactccataaacttccaaaagtgaatgctttctttccttctgaagcccctgctgtgtgaactcggcctttgctgcttaaacaactaggatcgctggctattcggttgtgatcctttctttcccatcggctgctgttgaacagcaaccaccagactgggggtgtgatgtggggacaaacaggtgctgaagcttgctgtccctgtgagcaccgggaagcttccctgacgcccggatccacccacttgctgctgagccgcaggcgcagacggtccagaaacaggactcggtgttgagaaaaagcaggctttattgggacgaggacactgcacgcgaccaacagacgaaggcagcccgatgggcaccccctacgccacgctcagaaaggtacacggatgtttcactaatgacgagcaactggaacatcgactcccctgggcggcttccccagcctcatccctcccaggggtcaggacactgctgccgtttccctaaaggcagctgtggtccctagagatagagcccctcaggggtgccttcttgttttttataaagaacattttcttta
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]