GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-04-27 03:30:15, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_005706341            2170 bp    mRNA    linear   PLN 05-JAN-2024
DEFINITION  Galdieria sulphuraria uncharacterized protein (Gasu_26660), mRNA.
ACCESSION   XM_005706341
VERSION     XM_005706341.1
DBLINK      BioProject: PRJNA221242
            BioSample: SAMN00011278
KEYWORDS    RefSeq.
SOURCE      Galdieria sulphuraria
  ORGANISM  Galdieria sulphuraria
            Eukaryota; Rhodophyta; Bangiophyceae; Galdieriales; Galdieriaceae;
            Galdieria.
REFERENCE   1  (bases 1 to 2170)
  AUTHORS   Schoenknecht,G., Chen,W.-H., Ternes,C.M., Barbier,G.G.,
            Shrestha,R.P., Stanke,M., Brautigam,A., Baker,B.J., Banfield,J.F.,
            Garavito,R.M., Carr,K., Wilkerson,C., Rensing,S.A., Gagneul,D.,
            Dickenson,N.E., Oesterhelt,C., Lercher,M.J. and Weber,A.P.M.
  TITLE     Gene Transfer from Bacteria and Archaea Facilitated Evolution of an
            Extremophilic Eukaryote
  JOURNAL   Science (2013) In press
REFERENCE   2  (bases 1 to 2170)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (03-JAN-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2170)
  AUTHORS   Schoenknecht,G., Chen,W.-H., Ternes,C.M., Barbier,G.G.,
            Shrestha,R.P., Stanke,M., Braeutigam,A., Baker,B.J., Banfield,J.F.,
            Garavito,R.M., Carr,K., Wilkerson,C., Rensing,S.A., Gagneul,D.,
            Dickenson,N.E., Oesterhelt,C., Lercher,M.J. and Weber,A.P.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2013) Department of Botany, Oklahoma State
            University, 104 Life Sciences East, Stillwater, OK 74078, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_005178455).
FEATURES             Location/Qualifiers
     source          1..2170
                     /organism="Galdieria sulphuraria"
                     /mol_type="mRNA"
                     /strain="074W"
                     /db_xref="taxon:130081"
                     /chromosome="Unknown"
                     /country="Indonesia: Mount Lawu, Central Java"
     gene            1..2170
                     /locus_tag="Gasu_26660"
                     /db_xref="GeneID:17088646"
     CDS             37..2055
                     /locus_tag="Gasu_26660"
                     /codon_start=1
                     /product="uncharacterized protein"
                     /protein_id="XP_005706398.1"
                     /db_xref="GeneID:17088646"
                     /translation="
MKLLQSFCLLSLCIIFCLSPLLAEAADYERLCHCFQQDTSAFDLYKLVGTYSVTSCSSCNEKNCAALFGEQESDYNKLCAYIGESVVDAVESVLEGDFKSAETYMQDLISNQTTLIENYIDKLLGYLNNTLDGFRNEVGTNITVIEQEINEINTTFIAQDIQEAVTQIENYVSKDINEAITSLEVQIQKYAEKIEVNISEQLDIIETDIEQVNLTLVLDEIKKYAEKIEVNISEQLDIIETDIEQVNLTLVLDEIKKYAEKIEVNISEQLDIIETDIEQVNITLVLDEIKKYAEKIEVNISEQLDIIETDIEQVNITLVLDEIKKYAEKIEVNISEQLDIIETDIEQVNITLVLDEIKKYAEKIEVNISEQLDIIETDIEQVNLTLVLDEIKKYAEKIEVNISEQLDIIETDIEQVNLTLVLDEIKKYAEKIEVNISEQLDIIETDIEQVNITLVLDEIKKYAEKIEVNVTSDIDQAINTLKEFVDSVSVDVEANISLDINKAVKTLQDKVEDIEINITKQLKFIGDDIENLNETIVSEMLSFVENLSVNISIDTNETVTSINKTVTKIFEELERNLSLDFYDIVSNVNISLEDLDDEILKLIEDIASEVKEISEKNITVKVEDVLKEMLNINLNISLEQPTPPRRPVCNACQQPPCPYSPSCQMYQQQVGW"
     misc_feature    556..>1437
                     /locus_tag="Gasu_26660"
                     /note="Septation ring formation regulator, EzrA; Region:
                     EzrA; pfam06160"
                     /db_xref="CDD:428797"
     misc_feature    <1039..1920
                     /locus_tag="Gasu_26660"
                     /note="Ring-infected erythrocyte surface antigen;
                     Provisional; Region: PTZ00341"
                     /db_xref="CDD:173534"
ORIGIN      
cacatttaacgtttcttctctttgcttggaactggcatgaagttgttacaatctttttgtttactctcattgtgcattattttttgtttgagcccgcttttagcagaagctgctgattacgagagattgtgccactgtttccagcaagataccagtgctttcgatttatacaagcttgtgggaacgtactccgtaacatcatgttcttcgtgcaatgaaaaaaactgtgcagccctttttggagaacaagaaagtgactataataagctatgtgcgtatattggagaaagtgttgtcgatgcagtagaatcagtgctagaaggagatttcaagtcagctgaaacttatatgcaggatttgatctccaatcaaacaaccttgattgagaattatatcgacaagcttttgggatacttgaataatactttggacggttttcgaaatgaagtaggaacaaacataactgtgattgaacaagaaatcaatgagataaataccacttttatagcacaagatatccaagaggccgtcactcaaatcgaaaattatgtaagcaaagacatcaacgaagctataacgtcattggaagttcaaatacaaaaatatgcagagaagattgaagtcaatatctcagaacagttggatattattgaaacggatattgaacaagtcaaccttactttggtattggatgaaattaagaaatatgcagagaagattgaagttaatatctcagaacagttggatattattgaaacggatattgaacaagtcaaccttactttggtattggatgaaattaagaaatatgcagagaagattgaagtcaatatctcagaacagttggatattattgaaacggatattgaacaagtcaacattactttggtattggatgaaattaagaaatatgcagagaagattgaagtcaatatctcagaacagttggatattattgaaacggatattgaacaagtcaacattactttggtattggatgaaattaagaaatatgcagagaagattgaagtcaatatctcagaacagttggatattattgaaacggatattgaacaagtcaacattactttggtattggatgagattaagaaatatgcagagaagattgaagttaatatctcagaacagttggatattattgaaacggatattgaacaagtcaaccttactttggtattggatgaaattaagaaatatgcagagaagattgaagttaatatctcagaacagttggatattattgaaacggatattgaacaagtcaaccttactttggtattggatgaaattaagaaatatgcagagaagattgaagtcaatatctcagaacagttggatattattgaaacggatattgaacaagtcaacattactttggtattggatgaaattaagaagtatgcagagaagattgaagttaatgttacctcggatattgatcaagctataaacactttaaaggagtttgttgacagtgtttctgttgatgttgaggcaaacatttctctggatatcaataaagctgtcaagacgttgcaggataaagttgaagatatcgaaattaacatcaccaaacagcttaaatttatcggagacgatattgaaaacctgaatgaaactattgtgtcggagatgttgagctttgttgaaaatctatccgtaaatatctcgattgatacgaatgagactgtgacatccattaacaagacggtgacgaagatatttgaggagctcgaacgcaatcttagcttagatttttacgacattgttagtaacgttaacatttctttggaggatttggatgatgaaattttgaaacttatcgaggatatcgcttctgaggtgaaagaaatttctgagaaaaatataacggtgaaggtggaggatgtcttgaaggagatgctcaacattaatcttaatattagtttggagcaaccgacacctccaagaaggccagtttgtaacgcatgccagcagccaccctgcccttactccccatcttgtcaaatgtaccaacagcaagtcggttggtaatgcaacagtgtcagttgtagttagttgttgtcgaccttatttgaaagaaaatccgtagtctagtcatggtattatatacacgtgtttgtggtttagtaaagaatgtttccaggtt
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]