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2024-05-05 18:24:41, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_005530753            2844 bp    mRNA    linear   VRT 21-SEP-2015
DEFINITION  PREDICTED: Pseudopodoces humilis extensin-2-like (LOC102110925),
            mRNA.
ACCESSION   XM_005530753
VERSION     XM_005530753.1
DBLINK      BioProject: PRJNA217046
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Pseudopodoces humilis (Tibetan ground-tit)
  ORGANISM  Pseudopodoces humilis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Passeriformes; Paridae;
            Pseudopodoces.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_005087634.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Pseudopodoces humilis Annotation
                                           Release 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 6.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 100% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2844
                     /organism="Pseudopodoces humilis"
                     /mol_type="mRNA"
                     /db_xref="taxon:181119"
                     /chromosome="Unknown"
     gene            1..2844
                     /gene="LOC102110925"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein"
                     /db_xref="GeneID:102110925"
     CDS             1..2844
                     /gene="LOC102110925"
                     /codon_start=1
                     /product="extensin-2-like"
                     /protein_id="XP_005530810.1"
                     /db_xref="GeneID:102110925"
                     /translation="
MLEPNLPPLPGAPLKALRHFRAHITPESQQSRLFTGGQWEAEEESIYFTDGNWTEAHGAVAGRRPRSPAAPARQSQQGHPDALLPRSRLDPINSSRSWTTPDEELPAVPSSPRGGETAAPPPSPPLSGAAPQLPVITAGPPAPLSGAAAASPPLPLSGAAPQPPVAMAAPPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVAMAAPPPPLLSGAAPQPPVIMGASVPPLSFSHGLFPPSAAAEPQPGRGKGGQAGAASVPAG"
     misc_feature    <526..2052
                     /gene="LOC102110925"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    <1450..2832
                     /gene="LOC102110925"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
atgctcgagccgaacctcccgccacttccgggtgcgccgctcaaagcgctccgccacttccgggcccacatcactcccgaaagccagcaaagccggttgtttaccggcgggcagtgggaagccgaggaggagtccatttattttactgatggtaactggaccgaagcgcacggggcggtcgcgggcaggaggccgcggtcaccggcggctccagcgcgtcagagtcagcaaggacaccccgatgcgctcctgcctcgctcccggctcgatcccatcaactccagcaggtcatggacaacacccgacgaagagctccccgccgtcccgagctctccaaggggcggagagaccgccgcccctccgccgtcaccgcccctcagcggagccgcccctcagcttcccgtcatcacggcaggtcccccagctcccctcagcggcgccgccgccgcatcgccaccgcttcccctcagcggcgccgcccctcagcctcccgtcgccatggcggctcctccaccgcctcttctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctcccgtcgccatggcggctcctccaccgcctcttctcagcggcgccgcccctcagcctccggtcatcatgggggcatcggtccctcccctcagcttctcgcacgggctcttcccgcccagcgcagccgcggagccgcagcccgggcgcgggaagggcgggcaggccggggcggcgtcggtcccggcggggtag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]