2024-05-05 18:24:41, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_005530753 2844 bp mRNA linear VRT 21-SEP-2015 DEFINITION PREDICTED: Pseudopodoces humilis extensin-2-like (LOC102110925), mRNA. ACCESSION XM_005530753 VERSION XM_005530753.1 DBLINK BioProject: PRJNA217046 KEYWORDS RefSeq; includes ab initio. SOURCE Pseudopodoces humilis (Tibetan ground-tit) ORGANISM Pseudopodoces humilis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Pseudopodoces. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_005087634.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Pseudopodoces humilis Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..2844 /organism="Pseudopodoces humilis" /mol_type="mRNA" /db_xref="taxon:181119" /chromosome="Unknown" gene 1..2844 /gene="LOC102110925" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:102110925" CDS 1..2844 /gene="LOC102110925" /codon_start=1 /product="extensin-2-like" /protein_id="XP_005530810.1" /db_xref="GeneID:102110925" /translation="
MLEPNLPPLPGAPLKALRHFRAHITPESQQSRLFTGGQWEAEEESIYFTDGNWTEAHGAVAGRRPRSPAAPARQSQQGHPDALLPRSRLDPINSSRSWTTPDEELPAVPSSPRGGETAAPPPSPPLSGAAPQLPVITAGPPAPLSGAAAASPPLPLSGAAPQPPVAMAAPPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVIMAGPPPPHSGAAPPPLLSGAAPQPPVAMAAPPPPLLSGAAPQPPVIMGASVPPLSFSHGLFPPSAAAEPQPGRGKGGQAGAASVPAG"
misc_feature <526..2052 /gene="LOC102110925" /note="large tegument protein UL36; Provisional; Region: PHA03247" /db_xref="CDD:223021" misc_feature <1450..2832 /gene="LOC102110925" /note="large tegument protein UL36; Provisional; Region: PHA03247" /db_xref="CDD:223021" ORIGIN
atgctcgagccgaacctcccgccacttccgggtgcgccgctcaaagcgctccgccacttccgggcccacatcactcccgaaagccagcaaagccggttgtttaccggcgggcagtgggaagccgaggaggagtccatttattttactgatggtaactggaccgaagcgcacggggcggtcgcgggcaggaggccgcggtcaccggcggctccagcgcgtcagagtcagcaaggacaccccgatgcgctcctgcctcgctcccggctcgatcccatcaactccagcaggtcatggacaacacccgacgaagagctccccgccgtcccgagctctccaaggggcggagagaccgccgcccctccgccgtcaccgcccctcagcggagccgcccctcagcttcccgtcatcacggcaggtcccccagctcccctcagcggcgccgccgccgcatcgccaccgcttcccctcagcggcgccgcccctcagcctcccgtcgccatggcggctcctccaccgcctcttctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctccggtcatcatggcgggccccccgcctccccacagcggcgccgcgcccccacctctcctcagcggcgccgcccctcagcctcccgtcgccatggcggctcctccaccgcctcttctcagcggcgccgcccctcagcctccggtcatcatgggggcatcggtccctcccctcagcttctcgcacgggctcttcccgcccagcgcagccgcggagccgcagcccgggcgcgggaagggcgggcaggccggggcggcgtcggtcccggcggggtag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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