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2020-04-06 11:12:45, GGRNA.v2 : RefSeq release 99 (Mar, 2020)

LOCUS       XM_005428293            6082 bp    mRNA    linear   VRT 06-OCT-2019
DEFINITION  PREDICTED: Geospiza fortis argonaute RISC component 4 (AGO4),
            transcript variant X2, mRNA.
ACCESSION   XM_005428293
VERSION     XM_005428293.2
DBLINK      BioProject: PRJNA217051
KEYWORDS    RefSeq.
SOURCE      Geospiza fortis (medium ground-finch)
  ORGANISM  Geospiza fortis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Passeriformes; Thraupidae;
            Geospiza.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_005054478.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Oct 6, 2019 this sequence version replaced XM_005428293.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Geospiza fortis Annotation Release
                                           102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6082
                     /organism="Geospiza fortis"
                     /mol_type="mRNA"
                     /db_xref="taxon:48883"
                     /chromosome="Unknown"
                     /sex="female"
     gene            1..6082
                     /gene="AGO4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 17 ESTs, 50 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:102045156"
     CDS             181..2565
                     /gene="AGO4"
                     /codon_start=1
                     /product="protein argonaute-4 isoform X2"
                     /protein_id="XP_005428350.1"
                     /db_xref="GeneID:102045156"
                     /translation="
MVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGKDQTFKVSIQWVSVVSLQMLLEALAGHLNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNISEQSKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKLTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQETSQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"
     misc_feature    <181..444
                     /gene="AGO4"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:293095"
     misc_feature    478..627
                     /gene="AGO4"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:285861"
     misc_feature    628..990
                     /gene="AGO4"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(784..786,829..831,871..873,883..885,937..939,
                     958..960,964..966)
                     /gene="AGO4"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1129..2436
                     /gene="AGO4"
                     /note="Piwi_ago-like: PIWI domain, Argonaute-like
                     subfamily. Argonaute is the central component of the
                     RNA-induced silencing complex (RISC) and related
                     complexes. The PIWI domain is the C-terminal portion of
                     Argonaute and consists of two subdomains, one of...;
                     Region: Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1540..1542,1552..1554,1588..1599,1606..1608,
                     1630..1632,1639..1641,1651..1653,1663..1665)
                     /gene="AGO4"
                     /note="5' RNA guide strand anchoring site; other site"
                     /db_xref="CDD:240015"
     misc_feature    order(1744..1746,1750..1752,1990..1992,2404..2406)
                     /gene="AGO4"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
cccccaaccagccttttccagccgccccggcgcccaggcctgggcactgttgggaaacccatccggctcctggccaaccacttccaggttcagatccccaagattgatgtttatcactatgatgtggatatcaaaccagagaaacgcccccgaagagtcaacagggaggtggtggacacgatggtgaggcacttcaagatgcagatatttggggatcggcagcctggctacgatgggaagcggaacatgtacacagcacaccccttacccattggcagggacagagtggatatggaggttacacttccaggagaggggaaggaccagacatttaaggtttccattcagtgggtgtcagtcgtcagccttcagatgctgctggaagctctggcagggcacttgaatgaagttcctgaagattctgtacaggcactggatgtaatcacacggcaccttccctccatgaggtacactcctgtgggtcgctcctttttctcccctcctgaaggttattaccaccccctgggagggggcagggaggtctggtttggcttccaccagtctgtccgtcctgccatgtggaacatgatgctcaacattgatgtgtcagcgactgctttctatcgtgcccagcctatcattgagttcatgtgcgaggtcttggacatccagaacatcagtgaacaaagcaaacctctgacagactcccagcgtgtcaagtttaccaaagaaatcagaggtctaaaagtagaggtgacccactgtggccagatgaagagaaaataccgagtttgcaacgttacccggcgaccagccagccaccagacgttccctctgcagctggagaatgggcaggccatggagtgcacagtagctcagtattttaagcagaagtacagtctgcagctgaaataccctcacctgccgtgtctccaagtgggacaggagcagaaacacacgtacctgccactggaggtgtgtaacatcgtggctggccagaggtgcatcaagaagctgacagacaatcagacatcaaccatgataaaagctacagccaggtctgccccagacaggcaggaggagatcagcagactggtgaagagtaacagtatggttggtgggcctgatccctatctgaaggagtttggaattgttgtccataacgaaatgacagagctgacaggcagagttctgccagccccaatgctgcagtatggaggcaggaacaagactgtggccacaccaaaccaaggcgtgtgggacatgagagggaaacagttctatgctggcattgagattaaagtttgggctgttgcctgttttgctcctcagaaacaatgcagggaagacttgctgaagagtttcacagaccagctgcgcaagatctccaaggacgccgggatgcccatccagggccagccctgcttctgcaagtacgcccagggtgcagacagcgtggagcccatgttcaaacacttaaagctgacttatgttggcctgcagctcatcgtggtgattctgcctgggaagacaccggtgtacgctgaagtcaagcgggttggagatactcttctaggcatggccactcagtgtgttcaggtaaagaacgtggtcaaaacctctccacaaacgctgtccaacctgtgtctgaagatcaatgccaagcttggaggaatcaacaatgtgctggtacctcatcaaaggccctcagtgttccagcagccagtgatctttctgggagcagatgtcactcaccctcccgccggggacgggaagaagccgtcgatcgcggccgtggtgggcagcatggacgggcaccccagccgctactgcgccacggtgcgcgtgcagacctcgcgccaggagacctcccaggagctgctctacagccaggaggtgatccaggacctgaccaacatggtgcgggagctgctgatccagttctacaaatccactcgcttcaagcccaccaggatcatttactacagagggggagtgtcggaaggacagatgaaacaggtagcttggccagagctgatcgctatccggaaggcctgcattagtttggaggaagattatagacctggaataacctacattgttgtgcagaaaaggcatcacaccaggctgttctgtgctgacaaaactgaaagggtgggtaaaagtggcaacgtaccagcaggcactactgtggacagcaccatcacacatccctctgaatttgacttttacctctgtagccatgcaggaattcagggaaccagccggccctcccactaccaggtgttgtgggatgacaactgcttcacagcagacgagctgcagctgctgacgtaccagctgtgccacacgtacgtgcgctgcacccgctccgtctccatccccgcgcccgcctactatgccaggctggtggcatttcgggccaggtaccatcttgtggacaaggatcacgacagcgctgagggcagccacgtgtcagggcagagcaacggccgcgacccgcaggcgctggccaaggccgtgcagatccaccacgacacccagcacaccatgtatttcgcttgagagcacctgggaagatgaggctaaacaactacccatgcagtcctgaagtgtttggaaacctcctgctctatccagggccgggggatttcggactgcccactaccagcagctccggacagtcgcactgaatttgttcttcactgcaacgtctgatgcaccaacacaattgagccatttgtttcattgttttctgtactagaaatccatagacttgtcttttctgatgcattggactgaatttttacctcaaagcgcaaaggccgatcatcctgaaatttttcaaggacttggcacgaaaggtttctatcaaatcttttgctagctgtggttttttcagttctcctcatcccatgagctgacggtgactgctgctctgtctccgtgccctgcttcgtgagtatgatgtgatggcaaaatgttttatccagctcgctgtaatccttctgtcgtgtggggccatagatttttttatggagattttagacttcactactgtaaatgccttttaacaaacataactttcacaggtattgcagttttttgtcagttttactaattatctttttaatctctgcagacttgggctgcaaagcaattgcactatactgcgagttaataggtggttcttgttctgtgaatgtgtaatataaccaatagtgatgcctgtcagtagattttaatgataatggttacaaataatactgccatggtatcgtaacaagtactgaaccatcatttcccccctctaaaaatgataaaacaaaaaaaaaatttagcttttaggtattttgcaaacttttacaaaagtgcccactttatgctgctgtgtggtttgataaatctaagtgattttaaaacttttttctcatagaaggtttaactttggcaataaatctttgttttttaagcccccccaaacagtgtaattttctagctgaggattgtgcatgagtttaaccaacgttctcgtgtcgttttctgaacacacaatttggcagtttctgaaacaaattagaaaagacacatttccatgctttttttaagaattatttttaactgttttatattcactgttggtgtcctgtctacaacattttttataagcttggaaactgggtgttccgtgtaggaaaggccaacgtgtgcagttgaaatgtattgtgtgacaggcaacctgaggacttgtaccagcattttgaattgttttttttccctgggaatctgggttgcccacacaattgcatttacagcatgttgaacccgtgtgagtctcaaatgctgattctgtcccagcctagaaattagggtttttaatctgcttggcttttttcagctgcaacctgtaatccagaccagggacctggtttccctggtattcctgtaatccatgaattcctgtaatttaagactagattccttactgaatacctgagttagtgcagattaaagcttattcctaaactgaggaggagtttgaggagcccgaggattgcactgtggtctctgatacttgtgtggggtttgctgctaagttgtctgctgtcccaaagcttaggaaccagccccctccaaatttcagcaataggaaatgctgtttccttcagtctttaagcttgtaaataaatgaaagtttacatttctaaatgctgttgttttcagttgtaccagagtacactgaacatattcagacagttttataacctccttgccagtagtacgtctcataaattaagtttaacctcttttcatttctgttgaaaatgggactgaagtgaaccctgctcctggcacgtgccaggacgggtttagattgaaaaaacaaaaaagattcttttacgttttttaactttttttttaaagaatacctcacttgtgtaacaaaatcaggacatgtgggtgggagactgaccgctgcttttctcagtactcgttcagggagaagacacaaaaaccctttttagagtgaactctgactgacccaacacacacggagaactttggcaccttgaaaagcacctgagcacctgttggaggtggtaggatccaagatccctgatttgagtttgtgcactaggaatggggctggtttaacaagggtgcataaaaaatgaactttatcaccagttagttgtccagtgccaagcactcctggttgagactgagggaagggagagcctctccttggtttgcctgtggctggatatttaacctcagaccaggtggagcatcagcccctggtgagccctgggccagcacccaagcggggctggtgtgagcccaccccgggcccagggctggagttttggggggaaagcactgaagttcaggatccaagttgcagcagtgctgccctaggcaggtctgagcccaagtctggaggacttgaggacctgagtgagccctgtgggcctgagtgactcgttctgcatgtgtcaatcaatgggaagatgtgcattctgtagctgtagttttagggtgttttgatttttgtttttttggggttttttttttataaataaagcctgttggccactgtttagctctgtggtgtgaaagattttaaatgtagcaaagttcaaggagttggggaagggggtggttgatatatatatatattaaaaaatataaaaaaaggggagggagggggcagaaatgctgttttccacccggttctgcttgctttgtccctgctgagctctgaacaagctctggcaatccctagttagcctgtctgcagcagtctggctcttgtgttgctgggagctccatccgaagggcggtgcaggggctgtcctgtgcccaccctggctgggcccttgggatggggcagggccctggctcagagctggcactgacagccccgacccctttgtggatgtgctgtaggagttttcttgctcaatagcgagggagtgactctgctttcgttttcagaaggcagggccagagggcattggatccatccctatccnnnnnnnnnnnnnnnnnnnnnnnnntctttccctgtgcagtggaggaaagatcttgcactaaatatcacagattttcttagaccttgctattgacattttcatatttctatgtctagaggctgcaacttcaatgtaaaatgtttgcatttgttcagtttgacttctgatgtaattttttggtttctatattgttagacttgtaatgtttcaaatggtattttattaactttggactggatgtatgtctctagcaatacgaggtactttctaaactgtcctggggctcacagccccgtgtcgagataagatgctggtcgtgtacaattgcattgtatttttttttttttagcctgcagggatattttgtgttcatgtgtccaaaaataataataataataaaaaaaaattggcattctcgtgccaaatgttctgttttttcttattgctgtccaataaatgcaatgtacagagtgagcaaccaatactgttgcctgtaaacaaatgtcttaaactatttaacttttaattaaaacttgtacacaatg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]