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2024-04-29 13:14:14, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_005342689            1349 bp    mRNA    linear   ROD 22-MAR-2021
DEFINITION  PREDICTED: Ictidomys tridecemlineatus UDP-glucuronosyltransferase
            2B31-like (LOC101972081), mRNA.
ACCESSION   XM_005342689
VERSION     XM_005342689.2
DBLINK      BioProject: PRJNA714113
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
  ORGANISM  Ictidomys tridecemlineatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia;
            Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_024405285.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 22, 2021 this sequence version replaced XM_005342689.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Ictidomys tridecemlineatus
                                           Annotation Release 103
            Annotation Version          :: 103
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.6
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1349
                     /organism="Ictidomys tridecemlineatus"
                     /mol_type="mRNA"
                     /isolate="GS200"
                     /db_xref="taxon:43179"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="liver"
                     /collection_date="2010"
                     /collected_by="Sandy Martin, University of Colorado,
                     Anschutz Medical Campus"
     gene            1..1349
                     /gene="LOC101972081"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 97% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:101972081"
     CDS             1..732
                     /gene="LOC101972081"
                     /codon_start=1
                     /product="UDP-glucuronosyltransferase 2B31-like"
                     /protein_id="XP_005342746.2"
                     /db_xref="GeneID:101972081"
                     /translation="
MPVTEMEDFVQSSGENGVVVFSLGSMVNNMTEERANVIASALAQIPQKVIWRYDGKKPPTLGPNTRLYKWIPQNDLLGHPKTKAFITHGGTNGIYEAIYHGIPLVGIPLFGDQPDNVMHMKAKGAALRLNFITMSSMDLLNALNTVINEPSYKENAMRLSRIHHEQPVKPLDRAVFWIEFVMHHKGAKHLRVAAHDLSWFQYYSLDVLGFLLACVATVIFIITKCCLFCCQKFTKPRNKKKRA"
     misc_feature    <13..729
                     /gene="LOC101972081"
                     /note="UDP-glucoronosyl and UDP-glucosyl transferase;
                     Region: UDPGT; pfam00201"
                     /db_xref="CDD:278624"
     misc_feature    order(73..75,262..264,268..270,274..279)
                     /gene="LOC101972081"
                     /note="TDP-binding site [active]"
                     /db_xref="CDD:340817"
ORIGIN      
atgcctgtcacagaaatggaagactttgtccagagctctggagagaatggtgttgtggtgttttctctggggtcaatggtcaataacatgaccgaagaaagggccaatgtgattgcatcagcccttgcccagattccacaaaaggtcatatggagatatgatggcaagaaaccacctaccttaggacccaatactagactttataaatggattccccagaatgaccttcttggtcatccaaaaaccaaagcttttataactcatggtggaaccaatggcatctatgaggccatctatcatgggatccctctggtgggcattcccttgtttggggatcaacctgataatgtcatgcacatgaaggccaaaggagcagctcttagattgaattttattacaatgtcaagtatggatttactcaatgcattgaatacagtcattaatgaaccttcatataaagagaatgctatgaggctatcaagaattcaccatgaacagccagtgaagcctctggaccgagctgtcttctggattgagtttgtcatgcaccacaaaggagctaaacacctccgggttgctgcccatgacctctcctggttccagtactactctttggatgtgcttgggttcctactggcctgtgtggcaactgtgatatttatcatcaccaaatgctgtctgttttgttgccagaagtttactaaaccaagaaataagaagaaaagggcatagttttatctagacccaaagctgggagtcctgacagatggacctcctccagttcaatttcacaagaagagattgtgaaccaggctccttcttctcctaacaaaatcacttttcaaaactcatctcatcaagacacagcccagttttccaaaatatgctgcttgtttaagagttagaactatttcaggacaaagggaggtgggaaaaataataataataaaatgatataagtgtctattgaaaattacaggtggaatttacaaatggcacagtattaatttaccaagctggcctgtggttcataacttattcatggatacaagaactttcaaaagtatattcatagtgtcaacatagatttgcaaatactctgcatgatttaatttcacatgggtgtagagttttgtagtgttaacttcttctgaataaggtattcaattcttaaaattgtgtgtcaagattcacccttctcttttgttttgggagactggtagtgctggcttgtacatccagccttaccatcatttctcttcaggatctgataagacttttatcttcttcttgctgaagtcatttccaagaaaagtatgtcaaaaaagaaatatacagtttcctaccta
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]