2024-04-29 13:14:14, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_005342689 1349 bp mRNA linear ROD 22-MAR-2021 DEFINITION PREDICTED: Ictidomys tridecemlineatus UDP-glucuronosyltransferase 2B31-like (LOC101972081), mRNA. ACCESSION XM_005342689 VERSION XM_005342689.2 DBLINK BioProject: PRJNA714113 KEYWORDS RefSeq; includes ab initio. SOURCE Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ORGANISM Ictidomys tridecemlineatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024405285.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Mar 22, 2021 this sequence version replaced XM_005342689.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ictidomys tridecemlineatus Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1349 /organism="Ictidomys tridecemlineatus" /mol_type="mRNA" /isolate="GS200" /db_xref="taxon:43179" /chromosome="Unknown" /sex="female" /tissue_type="liver" /collection_date="2010" /collected_by="Sandy Martin, University of Colorado, Anschutz Medical Campus" gene 1..1349 /gene="LOC101972081" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:101972081" CDS 1..732 /gene="LOC101972081" /codon_start=1 /product="UDP-glucuronosyltransferase 2B31-like" /protein_id="XP_005342746.2" /db_xref="GeneID:101972081" /translation="
MPVTEMEDFVQSSGENGVVVFSLGSMVNNMTEERANVIASALAQIPQKVIWRYDGKKPPTLGPNTRLYKWIPQNDLLGHPKTKAFITHGGTNGIYEAIYHGIPLVGIPLFGDQPDNVMHMKAKGAALRLNFITMSSMDLLNALNTVINEPSYKENAMRLSRIHHEQPVKPLDRAVFWIEFVMHHKGAKHLRVAAHDLSWFQYYSLDVLGFLLACVATVIFIITKCCLFCCQKFTKPRNKKKRA"
misc_feature <13..729 /gene="LOC101972081" /note="UDP-glucoronosyl and UDP-glucosyl transferase; Region: UDPGT; pfam00201" /db_xref="CDD:278624" misc_feature order(73..75,262..264,268..270,274..279) /gene="LOC101972081" /note="TDP-binding site [active]" /db_xref="CDD:340817" ORIGIN
atgcctgtcacagaaatggaagactttgtccagagctctggagagaatggtgttgtggtgttttctctggggtcaatggtcaataacatgaccgaagaaagggccaatgtgattgcatcagcccttgcccagattccacaaaaggtcatatggagatatgatggcaagaaaccacctaccttaggacccaatactagactttataaatggattccccagaatgaccttcttggtcatccaaaaaccaaagcttttataactcatggtggaaccaatggcatctatgaggccatctatcatgggatccctctggtgggcattcccttgtttggggatcaacctgataatgtcatgcacatgaaggccaaaggagcagctcttagattgaattttattacaatgtcaagtatggatttactcaatgcattgaatacagtcattaatgaaccttcatataaagagaatgctatgaggctatcaagaattcaccatgaacagccagtgaagcctctggaccgagctgtcttctggattgagtttgtcatgcaccacaaaggagctaaacacctccgggttgctgcccatgacctctcctggttccagtactactctttggatgtgcttgggttcctactggcctgtgtggcaactgtgatatttatcatcaccaaatgctgtctgttttgttgccagaagtttactaaaccaagaaataagaagaaaagggcatagttttatctagacccaaagctgggagtcctgacagatggacctcctccagttcaatttcacaagaagagattgtgaaccaggctccttcttctcctaacaaaatcacttttcaaaactcatctcatcaagacacagcccagttttccaaaatatgctgcttgtttaagagttagaactatttcaggacaaagggaggtgggaaaaataataataataaaatgatataagtgtctattgaaaattacaggtggaatttacaaatggcacagtattaatttaccaagctggcctgtggttcataacttattcatggatacaagaactttcaaaagtatattcatagtgtcaacatagatttgcaaatactctgcatgatttaatttcacatgggtgtagagttttgtagtgttaacttcttctgaataaggtattcaattcttaaaattgtgtgtcaagattcacccttctcttttgttttgggagactggtagtgctggcttgtacatccagccttaccatcatttctcttcaggatctgataagacttttatcttcttcttgctgaagtcatttccaagaaaagtatgtcaaaaaagaaatatacagtttcctaccta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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