LOCUS       XM_005321316            4401 bp    mRNA    linear   ROD 22-MAR-2021
DEFINITION  PREDICTED: Ictidomys tridecemlineatus NRDE-2, necessary for RNA
            interference, domain containing (Nrde2), transcript variant X1,
            mRNA.
ACCESSION   XM_005321316
VERSION     XM_005321316.4
DBLINK      BioProject: PRJNA714113
KEYWORDS    RefSeq.
SOURCE      Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
  ORGANISM  Ictidomys tridecemlineatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia;
            Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_024408640.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 22, 2021 this sequence version replaced XM_005321316.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Ictidomys tridecemlineatus
                                           Annotation Release 103
            Annotation Version          :: 103
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.6
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4401
                     /organism="Ictidomys tridecemlineatus"
                     /mol_type="mRNA"
                     /isolate="GS200"
                     /db_xref="taxon:43179"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="liver"
                     /collection_date="2010"
                     /collected_by="Sandy Martin, University of Colorado,
                     Anschutz Medical Campus"
     gene            1..4401
                     /gene="Nrde2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 111 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:101978561"
     CDS             93..3590
                     /gene="Nrde2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2 isoform X1"
                     /protein_id="XP_005321373.1"
                     /db_xref="GeneID:101978561"
                     /translation="

MALFPAFAGVSEAPDGGGSRKELDWLSNPSFCVGTVTTLSQQTEEATALVSEGSSPTRSPPKSEPSDESDASRKLTQISRRKKKEKKKKRKHQHHKKTKRKHRQSSSSESEPDSDSGKDRSSRSIRSSQNQAEKPNQGNNTAADAGLRSVWLEDIQSLTGETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGASSTKKCAHRHVERYFTKKSVGLMSVDGVSVSSRTDPPSAEPVLFIPVKDLDDMASPVTTWLNPLGIYDRSTTQWLQGQGPSEAESKQPDSQLDRENALLKAKVEEFNRKVRENPRDIQLWMAFVAFQDEVMRSPGLYAMEEGEQEKRKKSLKLILEKKLAILERAIESNQSSIDLKLAKLKLCAEFWEPAALVKEWQKLIFLHPNNTVLWQKYLLFCQSQFSTFSISKIHSLYGKCLSTLSAVKDGSILSHPALPGIEEAMFALLLQQCHFLRQAGHSEKAVSLFQAMIDFTFFKPDSVKDLPTKVQVEFFEPFWDSGEPRPGEKGARGWRAWMHQQERGGWVVINPDEDDDEPEEDDQEIKEKTLPRWQIWLAAERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSQELQFQLIEAFLQFLGVPSGFVPPASCLYLAMDESSIFDSGLCDEKPLTFFNLSFSGISCVGRMDRLGSLRWTRGHNREGEEFIRNVFHLVMPLFSGKQKSQLCFSWLQYEIAKVIWCLHTKNKKRLKSQGKNCKKLAKNLLKEPENRNNFCLWKQYAHLEWLLGNTEDARKVFDTALSMVGSSELKDRELCELSLLYAELEVELSLDSAGATTARAVHILTRLTESSPYGPFTGQVLPTNVLKARKAYEHALQDCVSKSCVSDPTPPDSLNCLSSLVKCFMLFQYLTVGIEAAMQIYEQLFAKLKGSVFSEGSGMEDGASSQNLTSVLEAMTLMHTSLLRFHMKVNVYPLTPLREALSEALRLYPGNQVLWRSYVQIQNKSHSASKTRKFFDTMTRSAKPMEPWLFAIEAEKMRKRLVETVQRVGGREIHATIPETGLTHRIRALFENAVRSDHGSQCPLLWRMYLNFLASLGNKDRSKGVFYKALQNCPWAKVLYMDAVEYFPDELQEVLDLMTEKELRVRLPLEELELLLED"

     misc_feature    576..866
                     /gene="Nrde2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(576..602,609..614,624..629,633..635,639..683,
                     690..698,702..710,729..734,738..740,750..755,759..764,
                     771..791,816..827,837..866)
                     /gene="Nrde2"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    1032..2030
                     /gene="Nrde2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
ORIGIN      

ccagagtgcactgcgaccggtggagtcctccaatcggcgctcgccggcaggggccacttccgtagagaggaacggcggagcggcctgtgtgcatggcgctgttcccagcctttgcgggcgttagtgaggcccccgatggtgggggttccaggaaagaattagactggctgagtaacccaagtttttgtgtcggaactgtaactaccctgagccaacaaactgaagaggccacagctcttgtttctgaagggtcatcaccaacaaggagtcctccgaaatcagagccttcagatgaaagtgatgctagcagaaagctcacacaaataagcaggagaaagaagaaggaaaaaaagaaaaaaaggaagcatcagcaccacaagaaaaccaagaggaagcaccggcagtcgagcagcagcgagtctgagccagattctgattcaggaaaggacagatcttccaggagcatcagaagcagccagaatcaagctgagaaacccaatcaaggaaataatactgctgctgatgctggacttcgttctgtctggcttgaggacattcagtctctgacaggagaaaccttcagaacagataagaaacccgatcctgcaaactgggagtataagtctctctaccgaggggatattgcaagatacaagaggaaaggagactcctgcctgggcattaacccgaagaagcagtgcatatcttgggaaggggcttcctcaacaaagaagtgtgcgcacaggcacgttgaacgctattttacgaagaagagtgtggggttgatgagcgttgatggcgtttctgttagcagtagaactgatcctccctctgcagagccggtcttgtttatccccgtgaaggacttggatgatatggcttctcctgttacaacctggttgaatcctttggggatttatgatcggtcaaccacacagtggttacaaggacagggtccttcagaagcagaatcaaagcagccagactcacagctggacagagagaatgctcttctcaaggcaaaggtggaggagtttaataggaaggttcgggagaaccctcgggatattcagctgtggatggcatttgttgcttttcaggatgaggtcatgaggagtcctggcctgtatgctatggaggaaggagaacaggagaagagaaagaagtccctgaagctcatcctggagaagaagctggccatcctggagcgggccattgagagcaaccagagcagcatcgatctcaagctcgccaagctgaagctctgtgcggagttctgggagcctgctgcgctggtcaaagagtggcagaaactgatctttttacatcccaataacacggtcctttggcagaaataccttttgttttgccagagccaatttagcactttttcaatatcaaaaattcacagtctttatggaaagtgcttgagcactctgtctgctgttaaggatggcagcatcttatctcaccctgcgctgcctggcatagaagaggccatgtttgcactccttcttcagcagtgccactttctgcggcaggctggccactcagagaaggccgtgtctttgttccaggccatgattgacttcactttcttcaaacctgacagtgtgaaagatctgcctaccaaagtacaggtggaattttttgagcccttctgggacagtggagagccacggcctggggagaaaggagcgcgaggctggagggcgtggatgcaccagcaggagcggggtggctgggtggtcatcaatccagatgaggatgatgacgagccagaagaggatgaccaggagataaaagagaagactctgcccaggtggcagatctggcttgctgctgagcgttcccgagatcaaaggcactggcggccctggcgccctgataagaccaagaaacaaactgaggaagactgtgaggatcccgagagacaggtgttgtttgatgatattggacaatctctgatcagactttccagccaagagcttcagttccagctgatcgaggcctttctgcagttcttgggtgtgccttccggctttgtccctccagcctcctgcctgtacctggccatggatgagagcagcatctttgatagtggactctgtgatgaaaagcccttgacttttttcaacctttcattttctggcattagctgtgttggccgcatggaccgcttgggctctctccgctggaccaggggtcacaatcgagagggcgaggagttcattcgcaatgtcttccaccttgtgatgcctttgttttcaggcaagcaaaagtctcagctctgcttctcctggttacagtacgagattgcaaaggtcatttggtgtctgcacactaaaaacaagaagagattaaagtcacaggggaagaactgcaaaaaactagccaagaatctcctcaaagagccagaaaaccgtaataatttttgcctctggaagcagtacgcacatctggagtggttgcttggcaacacagaggatgcccgaaaagtttttgatacagccctcagtatggtgggcagcagcgagctgaaggatcgtgaactttgtgaactcagtctcctctatgctgagctggaggtggagctatcactggactcggcaggggccaccacggcccgagctgttcacatactaacccgactgacagagagcagtccctacgggcccttcactgggcaggtcttacccactaatgttttgaaagctcgaaaggcttatgagcatgcgctacaagactgtgtgagtaagagctgtgtctctgatccaactcctcctgactccttgaactgcctgagtagcttggtcaaatgctttatgctgttccagtatttgaccgtagggattgaagctgccatgcagatatatgaacagctatttgccaaactgaagggttctgttttctcagaaggctctggcatggaggacggtgccagctcccagaatctgaccagtgttcttgaagccatgacgctgatgcacacaagtctgctgaggttccacatgaaagttaatgtttaccctttgactccgctacgagaggcgctctcggaggctttgaggctgtatcccggcaaccaggttctttggaggtcatatgttcagattcaaaataagtctcacagtgctagcaagaccagaaaattctttgatacaatgaccaggtctgccaaacccatggagccgtggttatttgcaattgaagctgagaaaatgaggaaaagactggtagaaactgttcagagggtgggaggtagagagatccacgccaccatcccagagactggcttaacacatcggatcagagccctgtttgagaatgcagtgcggagtgaccacggcagccagtgccccttactgtggaggatgtatttgaattttttggcttccttaggaaacaaagacagaagcaaaggtgtgttctacaaagcacttcagaattgtccctgggcaaaggtgttgtacatggacgccgtggagtacttccctgacgagctgcaggaggtcctggatctgatgaccgagaaggagctgcgtgtgcggctgcccctggaggagctggagctcctgctggaggactagggtgcaggcaggggagctggggagcgcatgcgaggagcctctgttttggaagtgctcttctttggtcctttgtgtcggggttgtcaggctttcccatcttacaaaggttttggacgtgtaaacgacacaaagccattgctttacatattatatatgtgaatgtgtgcacctgtgtacagaggcgcaagatcaccagtgatgacgagacgtgtggttgagctgtgcgtggattcctattccttctgctcttgctttgcccagccagcactggccccgccctggtacacacagcccctggtggcatcattgagggtccttccagatccctctgtgttaggactttaaagtctggccccttaacattaggacgtctttctgaagctgggtggcaggagagcagattttgtcctcatcctcagcccagcacagtggagggtcgtttaacccttggtgttccttcctgggtcaggtgtggggcaggtgtctgcttatttcctgagccccaccgggtggcccctgcctctgcacagcagcatcccctgggatctcgggagcagtgcagactcccaggcccaccccagccctgcgagtcagagtctgccctccatcagtgacgagtggaaagcccttggagccctccacagaaagcctgctgatgacaccatcccagagagggcggactgcagccagcaccttccccacccagcctgactctgcagggagcactgaggttcgcttggcctccgtgtggcagctggccctgtttttgattgctgagggctgtgaataaaatgagagagaaatatccaca

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