LOCUS       XM_005236559            1566 bp    mRNA    linear   VRT 02-MAY-2023
DEFINITION  PREDICTED: Falco peregrinus homeobox B8 (HOXB8), transcript variant
            X1, mRNA.
ACCESSION   XM_005236559
VERSION     XM_005236559.3
DBLINK      BioProject: PRJNA962079
KEYWORDS    RefSeq.
SOURCE      Falco peregrinus (peregrine falcon)
  ORGANISM  Falco peregrinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Falconiformes; Falconidae; Falco.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_073738) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On May 2, 2023 this sequence version replaced XM_005236559.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_023634155.1-RS_2023_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/26/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1566
                     /organism="Falco peregrinus"
                     /mol_type="mRNA"
                     /isolate="bFalPer1"
                     /db_xref="taxon:8954"
                     /chromosome="18"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /country="Qatar: Doha"
                     /lat_lon="25.286106 N 51.534817 E"
                     /collection_date="2020-02-16"
                     /collected_by="Farooq Omar Al-Ajli, Souq Waqif Falcon
                     Hospital"
     gene            1..1566
                     /gene="HOXB8"
                     /note="homeobox B8; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 16 Proteins"
                     /db_xref="GeneID:101916590"
     CDS             42..767
                     /gene="HOXB8"
                     /codon_start=1
                     /product="homeobox protein Hox-B8 isoform X1"
                     /protein_id="XP_005236616.1"
                     /db_xref="GeneID:101916590"
                     /translation="

MSSYFVNSLFSKYKTGDSLRPNYYDCGFAQDLGGRPTVVYGPSTGGTFQHPTQIQEFYHGASSLSSSPYQQNPCAVACHGDPSNFYGYDPLQRQSLFSAQESDLVQYTDCKLAASGLGEEAESSEQSPSPTQLFPWMRPQAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKMERAQEVDEEGEAQKADKK"

     misc_feature    order(474..488,492..494,543..545,561..563,600..602,
                     606..611,618..623,627..635,639..644)
                     /gene="HOXB8"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(480..482,489..491,609..611,618..623,630..632)
                     /gene="HOXB8"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    483..641
                     /gene="HOXB8"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
ORIGIN      

ttttcttcctgctccaaacaaatattcttatttaaattaaaatgagctcttattttgtcaactcactcttctccaaatacaaaaccggggactccttgcgtcccaattactatgactgcgggttcgctcaggatcttgggggcagacccacggtggtgtacggacccagcacggggggcaccttccagcatccgacccaaatccaggagttttaccacggagcatcctcactctccagctccccttaccaacagaatccctgcgccgtggcgtgccatggggaccccagcaacttctatggctacgaccccttgcaaaggcagagcctcttcagcgcccaggagtcggacttggtgcagtacacggactgcaagcttgctgccagcggccttggagaggaggcggagagctcggagcagagcccttctccgacccagcttttcccctggatgcgaccgcaagccgctggacggaggagggggaggcaaacctacagccgctaccagacgctggaactggagaaggaatttctatttaatccctacctgacccgcaaacggaggatcgaggtctcgcatgccctgggattgacagaaaggcaggtcaaaatctggttccagaacaggaggatgaaatggaaaaaggaaaacaacaaagacaagtttcccagcagcaaatgcgagcaggaagaactggaaaaacagaaaatggaaagagcccaggaggtggacgaggaaggggaagcacagaaggcggacaagaaataaaaggatttttaaggactgaaaggcaagcactgctggggtggacgagcccctgagccccacgttaatggcagttaatgtaagggaggggtgggaaaaaaaacaacaatgcatagaaaagagaaaggaaaaaaacccaaccttttattgctgtaaaacaatatagctgtaagcaccactttcctgattatcctttgatacaatgaacagtatgcaaaagtgatcgggaggtctctcctgccttttgccagttattaactagtggtagtgtaacgcaatagcttatgtaaaacatgactgtgaaattttctctctctctctgtctttctctctgtctctctcttctttcctggggggggtgggttggttaacatagctttcaatgctataggagttacgtgaaattacatttgtgcactttttttttgttttaaattttccacctttttttgttgtggtttatctgtatgtactggaggtagctattgaaacaaacatcccaacaacatgaaactgcctatttatgctctagttatctctttctttctctctctttctctctttactttccctgcttctgttcttttctttggttcgggattttcttttttgtttgtttgggttttgtttacaattcttaaatgtctcttccaaaaaaaaaaaaaaagggaaaaaaaggaaaaaaaaaaagacaagaaaaaaagcgtttttctctcatttagttagcatgcgcacagtgaagcaagttgtaaagtgatctttaggttaactgtgaaaaagaatgtatactgtatacgtgaat

//