2024-03-28 19:07:18, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_005042516 2994 bp mRNA linear VRT 20-APR-2016 DEFINITION PREDICTED: Ficedula albicollis argonaute 2, RISC catalytic component (AGO2), transcript variant X3, mRNA. ACCESSION XM_005042516 VERSION XM_005042516.2 DBLINK BioProject: PRJNA208061 KEYWORDS RefSeq. SOURCE Ficedula albicollis (Collared flycatcher) ORGANISM Ficedula albicollis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Ficedula. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_021673.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 20, 2016 this sequence version replaced XM_005042516.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Ficedula albicollis Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2994 /organism="Ficedula albicollis" /mol_type="mRNA" /isolate="OC2" /db_xref="taxon:59894" /chromosome="2" /sex="male" /country="Sweden: Oland" /collection_date="2009" gene 1..2994 /gene="AGO2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:101813885" CDS 70..2013 /gene="AGO2" /codon_start=1 /product="protein argonaute-2 isoform X3" /protein_id="XP_005042573.1" /db_xref="GeneID:101813885" /translation="
MMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQENGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYTGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA"
misc_feature 112..474 /gene="AGO2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(268..270,313..315,355..357,367..369,421..423, 442..444,448..450) /gene="AGO2" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 607..1884 /gene="AGO2" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1018..1020,1030..1032,1066..1077,1084..1086, 1108..1110,1117..1119,1129..1131,1141..1143) /gene="AGO2" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1222..1224,1228..1230,1438..1440,1852..1854) /gene="AGO2" /note="active site" /db_xref="CDD:240015" ORIGIN
aatcctttgggtggtggcagagaagtttggtttggcttccatcagtcagtcagaccttcattatggaagatgatgttaaatattgatgtgtctgcaactgcattttacaaagcacagccagttattgagtttgtctgtgaagttctggacttcaaaagtattgaagaacaacaaaaacctctgacagattcccaaagggtaaagtttaccaaagaaataaaaggtctgaaggtggagataacacactgtggacaaatgaaaaggaagtaccgagtgtgcaatgtcaccagacgaccagcaagtcaccaaacattcccacttcagcaggagaatggacaaacagttgaatgcactgtagctcagtattttaaggacaggcataaattagttttacgttaccctcaccttccatgtttacaagttggacaggagcagaagcacacataccttcctctggaggtgtgcaacatagtggcaggacaaagatgtataaagaaactcactgacaatcaaacttccacaatgattcgagccactgccagatcagctccggaccggcaggaagagatcagcaaattgatgcggagtgcaagttttaacaccgacccttacgtccgagagtttgggataatggtcaaggatgaaatgacagatgtgactggcagagtcctacagcctccctcaatcctctatggaggcaggaataaagcaattgctacaccagtgcaaggtgtctgggacatgaggaataaacaatttcacactggaattgaaataaaggtttgggcaattgcctgctttgctccccagcgccagtgcactgaagttcatcttaagtccttcacagagcagctgaggaagatttccagggatgctggaatgccaatccaggggcagccctgcttctgcaagtacgcccagggagccgacagcgtggagcccatgttcagacacctcaagaacacttacactgggctgcagcttgtcgtggtcattttgccaggaaaaacaccagtctatgcggaggtgaagcgcgttggcgacacggtgctgggaatggccactcagtgtgtgcagatgaaaaatgtccaaagaacaacaccacaaactctgtccaacctttgcttaaaaataaatgtcaagttaggaggcgtaaataacattctcctgccacagggaagacccccagtattccagcagcctgtcatattccttggtgcagatgtaactcacccaccagctggggatgggaaaaagccttccattgctgcagttgtgggaagcatggatgctcatcccaaccgttactgtgccactgtgcgggtgcagcagcaccgccaggaaatcatccaggatttggctgccatggtcagggagctgctgatccagttctacaaatccacgagattcaaaccaactcgcatcatcttctacagggatggggtttctgaggggcagttccaacaggttctccaccacgagctgctggctatcagggaggcttgcattaaactggagaaggattatcagcctggcatcacatttatagtggtgcagaagaggcaccacaccagactcttctgcacagataaaaacgaacgggttggaaaaagtggaaacattccagctggtaccacagtggacacaaaaatcacccacccctcagagtttgacttctacctgtgtagtcatgctgggattcagggaacaagcagaccttcccactaccacgtgctctgggatgacaatcgcttctcgtcggacgagctgcagatcctcacctaccagctgtgccacacgtacgtgcgctgcacgcgctccgtctccatccccgcgccagcgtactacgcacacctggtggccttcagagccaggtaccatctggtggataaggaacacgacagtgctgaaggaagccacacttctggccagagcaatggcagagatcaccaagcacttgccaaggcagtccaggtgcaccaggacacgctgcgcaccatgtactttgcttgacatgttctaatgttcagcggctccggacaaggcagagttggattcacaccagaccagctgcacttagaccaacagatgccccaccccagggacagccagcaatgagtgatgcatctttatttctttctttccaatttgcaaggaagccttccgtccagaatttcagacttgatcacaaactgcattcttgtaccaaaccccactgttgtcggaaatgtggtttgccaaaaatctctgagctgcttggtataaaacagacccagattttataattaaatcaagagctgcaatctcagggcttagggaagaaaaacaaaaaaccaaaccaacaactcaacccacaaaactcctcattcagttagctgttcattgagttgcttttgataatttagaaagatctaattcatactaaggctggatgagctaaaattctgtgagtcagtgtttagtacaaaggaaagcaaagcatttttttgagtatttatgaagccttgattattctagatgcatttacaaaatttttattttcaaaataagagcgtgacaaaattctggtttctaactgtcttataaagattattctcagattattctctgtgtgtctaagggcaaatgtattttctgaagcttgttcttgaatgttttttattgtgctgcattttaaaatgtttttcatagactaaagatgaatttaaaaaaaaaaagagaaagaataaacctgtacctaagtttttaatagctccagttagattggcagaagaaaatgtgccatttaaaaaaatttgtaaagatttttttaaagtcatactgacagctaactttaggatttgtcatacaggactgtgacacttactttccaaagtctctaaagaatacgggtctgtggtgataaatacagtacaatcctttttcactgttgtttgagttagtgtaaattttatatatgtttcacagtattaatgtgataggctagatgctatt
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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