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2024-03-28 19:07:18, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_005042516            2994 bp    mRNA    linear   VRT 20-APR-2016
DEFINITION  PREDICTED: Ficedula albicollis argonaute 2, RISC catalytic
            component (AGO2), transcript variant X3, mRNA.
ACCESSION   XM_005042516
VERSION     XM_005042516.2
DBLINK      BioProject: PRJNA208061
KEYWORDS    RefSeq.
SOURCE      Ficedula albicollis (Collared flycatcher)
  ORGANISM  Ficedula albicollis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae;
            Ficedula.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_021673.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 20, 2016 this sequence version replaced XM_005042516.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Ficedula albicollis Annotation
                                           Release 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2994
                     /organism="Ficedula albicollis"
                     /mol_type="mRNA"
                     /isolate="OC2"
                     /db_xref="taxon:59894"
                     /chromosome="2"
                     /sex="male"
                     /country="Sweden: Oland"
                     /collection_date="2009"
     gene            1..2994
                     /gene="AGO2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:101813885"
     CDS             70..2013
                     /gene="AGO2"
                     /codon_start=1
                     /product="protein argonaute-2 isoform X3"
                     /protein_id="XP_005042573.1"
                     /db_xref="GeneID:101813885"
                     /translation="
MMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQENGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYTGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA"
     misc_feature    112..474
                     /gene="AGO2"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(268..270,313..315,355..357,367..369,421..423,
                     442..444,448..450)
                     /gene="AGO2"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    607..1884
                     /gene="AGO2"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1018..1020,1030..1032,1066..1077,1084..1086,
                     1108..1110,1117..1119,1129..1131,1141..1143)
                     /gene="AGO2"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1222..1224,1228..1230,1438..1440,1852..1854)
                     /gene="AGO2"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
aatcctttgggtggtggcagagaagtttggtttggcttccatcagtcagtcagaccttcattatggaagatgatgttaaatattgatgtgtctgcaactgcattttacaaagcacagccagttattgagtttgtctgtgaagttctggacttcaaaagtattgaagaacaacaaaaacctctgacagattcccaaagggtaaagtttaccaaagaaataaaaggtctgaaggtggagataacacactgtggacaaatgaaaaggaagtaccgagtgtgcaatgtcaccagacgaccagcaagtcaccaaacattcccacttcagcaggagaatggacaaacagttgaatgcactgtagctcagtattttaaggacaggcataaattagttttacgttaccctcaccttccatgtttacaagttggacaggagcagaagcacacataccttcctctggaggtgtgcaacatagtggcaggacaaagatgtataaagaaactcactgacaatcaaacttccacaatgattcgagccactgccagatcagctccggaccggcaggaagagatcagcaaattgatgcggagtgcaagttttaacaccgacccttacgtccgagagtttgggataatggtcaaggatgaaatgacagatgtgactggcagagtcctacagcctccctcaatcctctatggaggcaggaataaagcaattgctacaccagtgcaaggtgtctgggacatgaggaataaacaatttcacactggaattgaaataaaggtttgggcaattgcctgctttgctccccagcgccagtgcactgaagttcatcttaagtccttcacagagcagctgaggaagatttccagggatgctggaatgccaatccaggggcagccctgcttctgcaagtacgcccagggagccgacagcgtggagcccatgttcagacacctcaagaacacttacactgggctgcagcttgtcgtggtcattttgccaggaaaaacaccagtctatgcggaggtgaagcgcgttggcgacacggtgctgggaatggccactcagtgtgtgcagatgaaaaatgtccaaagaacaacaccacaaactctgtccaacctttgcttaaaaataaatgtcaagttaggaggcgtaaataacattctcctgccacagggaagacccccagtattccagcagcctgtcatattccttggtgcagatgtaactcacccaccagctggggatgggaaaaagccttccattgctgcagttgtgggaagcatggatgctcatcccaaccgttactgtgccactgtgcgggtgcagcagcaccgccaggaaatcatccaggatttggctgccatggtcagggagctgctgatccagttctacaaatccacgagattcaaaccaactcgcatcatcttctacagggatggggtttctgaggggcagttccaacaggttctccaccacgagctgctggctatcagggaggcttgcattaaactggagaaggattatcagcctggcatcacatttatagtggtgcagaagaggcaccacaccagactcttctgcacagataaaaacgaacgggttggaaaaagtggaaacattccagctggtaccacagtggacacaaaaatcacccacccctcagagtttgacttctacctgtgtagtcatgctgggattcagggaacaagcagaccttcccactaccacgtgctctgggatgacaatcgcttctcgtcggacgagctgcagatcctcacctaccagctgtgccacacgtacgtgcgctgcacgcgctccgtctccatccccgcgccagcgtactacgcacacctggtggccttcagagccaggtaccatctggtggataaggaacacgacagtgctgaaggaagccacacttctggccagagcaatggcagagatcaccaagcacttgccaaggcagtccaggtgcaccaggacacgctgcgcaccatgtactttgcttgacatgttctaatgttcagcggctccggacaaggcagagttggattcacaccagaccagctgcacttagaccaacagatgccccaccccagggacagccagcaatgagtgatgcatctttatttctttctttccaatttgcaaggaagccttccgtccagaatttcagacttgatcacaaactgcattcttgtaccaaaccccactgttgtcggaaatgtggtttgccaaaaatctctgagctgcttggtataaaacagacccagattttataattaaatcaagagctgcaatctcagggcttagggaagaaaaacaaaaaaccaaaccaacaactcaacccacaaaactcctcattcagttagctgttcattgagttgcttttgataatttagaaagatctaattcatactaaggctggatgagctaaaattctgtgagtcagtgtttagtacaaaggaaagcaaagcatttttttgagtatttatgaagccttgattattctagatgcatttacaaaatttttattttcaaaataagagcgtgacaaaattctggtttctaactgtcttataaagattattctcagattattctctgtgtgtctaagggcaaatgtattttctgaagcttgttcttgaatgttttttattgtgctgcattttaaaatgtttttcatagactaaagatgaatttaaaaaaaaaaagagaaagaataaacctgtacctaagtttttaatagctccagttagattggcagaagaaaatgtgccatttaaaaaaatttgtaaagatttttttaaagtcatactgacagctaactttaggatttgtcatacaggactgtgacacttactttccaaagtctctaaagaatacgggtctgtggtgataaatacagtacaatcctttttcactgttgtttgagttagtgtaaattttatatatgtttcacagtattaatgtgataggctagatgctatt
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]