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2020-04-07 23:01:33, GGRNA.v2 : RefSeq release 99 (Mar, 2020)

LOCUS       XM_004704970            4065 bp    mRNA    linear   MAM 19-SEP-2019
DEFINITION  PREDICTED: Echinops telfairi protein argonaute-1 (LOC101650964),
            transcript variant X1, mRNA.
ACCESSION   XM_004704970
VERSION     XM_004704970.2
DBLINK      BioProject: PRJNA193504
KEYWORDS    RefSeq.
SOURCE      Echinops telfairi (small Madagascar hedgehog)
  ORGANISM  Echinops telfairi
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_022111357.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jun 25, 2015 this sequence version replaced XM_004704970.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Echinops telfairi Annotation Release
                                           102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4065
                     /organism="Echinops telfairi"
                     /mol_type="mRNA"
                     /isolate="266"
                     /db_xref="taxon:9371"
                     /chromosome="Unknown"
                     /sex="female"
                     /country="Germany: Ludwig Maximilians University, Munich"
     gene            1..4065
                     /gene="LOC101650964"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 41 Proteins"
                     /db_xref="GeneID:101650964"
     CDS             107..2680
                     /gene="LOC101650964"
                     /codon_start=1
                     /product="protein argonaute-1 isoform X1"
                     /protein_id="XP_004705027.1"
                     /db_xref="GeneID:101650964"
                     /translation="
MEAGPSGAAAGAYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
     misc_feature    206..598
                     /gene="LOC101650964"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:339747"
     misc_feature    632..778
                     /gene="LOC101650964"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:337161"
     misc_feature    779..1141
                     /gene="LOC101650964"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(935..937,980..982,1022..1024,1034..1036,1088..1090,
                     1109..1111,1115..1117)
                     /gene="LOC101650964"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1274..2551
                     /gene="LOC101650964"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1685..1687,1697..1699,1733..1744,1751..1753,
                     1775..1777,1784..1786,1796..1798,1808..1810)
                     /gene="LOC101650964"
                     /note="5' RNA guide strand anchoring site; other site"
                     /db_xref="CDD:240015"
     misc_feature    order(1889..1891,1895..1897,2105..2107,2519..2521)
                     /gene="LOC101650964"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
ccgagcccggcccgggagccctagcagcgagggtgcggggtacgtaggcccctcacgctggactccaaagtctccaggccgcctgacctccgcacgggtatatgggatggaagcgggaccctcgggagcagctgcgggcgcttacctgccccccctgcagcaggtgttccaggcccctcgccgacctggaattggcactgtggggaaaccgatcaagctcctggccaattactttgaggtggacattcctaagatcgacgtctatcactacgaggtggacattaagccagataagtgtccgcgcagagtcaaccgggaagtggtggaatacatggtccagcatttcaagcctcagatctttggtgaccgcaagcccgtgtatgatggaaagaagaacatttacaccgtcacagcactgcccattggcaatgaacgggtggactttgaggtgacaatccctggggaagggaaggatcgaatctttaaggtctccatcaagtggctagccattgtgagctggcgcatgctacatgaagccctggtcagcggtcagattcctgttcccctggagtccgtgcaagccctggacgtggccatgaggcacctggcttccatgaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgtgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtgtcggccactgccttctacaaagcgcagccggtgattgagttcatgtgtgaggtgttggacatcaggaacatagatgagcagcccaagcccctcactgactctcagcgtgttcgcttcactaaagagatcaagggcttgaaggtggaagtcacccactgtggacagatgaagagaaaataccgtgtgtgcaatgttacccgccgccctgctagccatcagacgtttcccttgcagctggagagtggacagactgtggagtgcacggtggcacagtatttcaagcaaaagtataaccttcagctcaagtatccccatctgccctgcctacaagttggccaggaacaaaagcatacctacctgcccctagaggtctgtaacattgtggctgggcagcgatgcatcaagaagctgactgataaccagacttctactatgataaaggctacagccaggtctgcgcctgacagacaggaggagatcagccgcctgatgaagaatgccagctacaacttagacccttacatccaggaatttgggatcaaagtgaaggatgacatgacggaggtgacggggcgagtgctgccggcgcctatcttgcagtacggcggccggaatcgggccattgccacacccaatcagggtgtctgggacatgcgggggaagcagttctacaatgggattgagatcaaagtctgggctatcgcctgcttcgcaccccaaaaacagtgtcgagaagaggtgctcaagaacttcacagaccagcttcggaagatttccaaggacgcagggatgcccatccagggccagccttgcttctgcaagtatgcgcagggggcagacagtgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgctgaggtgaaacgtgttggagatacactcttgggaatggctacacaatgtgtgcaagtgaagaatgtggttaagacctcgcctcagaccctgtccaacctctgcctcaagatcaatgtcaagcttggtggcattaacaacatcctcgtcccacaccagcgctctgccgtctttcagcagccagtgatatttctgggagctgatgttacacacccccctgcgggggatggaaaaaagccctctatcacagcagtggtaggcagcatggatgcccaccccagcaggtactgtgctactgtgcgggtgcagcgaccgcggcaggagatcattgaagacttgtcctacatggtgcgagagctgctcatccagttctacaagtccactcgcttcaaacctactcgcatcatcttctaccgagatggggtccctgaaggccagcttccccagatcctccactatgagctgctggccatccgtgatgcctgcatcaaactggaaaaggactaccagcctgggatcacgtacattgtggtgcagaaacgccatcacacacgccttttctgtgctgacaagaatgagcgaattgggaagagtggcaacattcctgcagggaccactgtggacaccaacatcacccacccatttgagtttgacttctacctttgcagccatgcaggcattcagggtaccagccgaccatcccattactatgtgctttgggatgacaaccgtttcacagcggatgagctccagatcttgacgtaccagctgtgccacacttacgtacgatgcacacgctccgtttctatcccagcacctgcctactatgcccgcctggtggccttccgggctcgctaccacttggtggacaaggagcatgacagtggagaggggagccacatatcggggcagagcaatggacgggacccccaggccctggccaaagccgttcaagtgcaccaggatactctgcgcaccatgtactttgcttgaaggcagaatgctgttacctcactggatagaagaaagctttctaagccgtaggagctgtgccacctgaatccacaggaagcagggaggagggaggaggggtagggagggctgtaggaggccatgcttcctccttcagagcttgtgaaaaggtggggaactgggtcggcaagctagaccaccagccagaaatctctgatattcacctcatgcccccccacccttcaccccatcttgtcacatctggccctgaccccactggaccaagaggggtagcatcggtgcccaccatacacacaggtgtctcatgtgactcacagtgctaaggactcatgcctgacagtttggtaaggctggctcttcagccctgcggacaaaagctggtaggtttgagtttgatactttagaagggaaagtgaggggcttgggaaagtgggtgggaggagggaaggattttttttttttttttttttaggcgccttaatcagaagcggtctagatttgtttaaggaaaaaaatcaaaaacccatatcaatattttaggatactagatgttttaatgggttcagaattcagtttgtaggaagatttttaatgctaatggttttggttgctcctcccccagctgccagaccccttgtccttactcctatcttccacacttctgcttccccttaccacctcctccctgacaagcattcagcccctggtaagacttaaggcactatggcacttagctctgatgtgacatgaccctgtcttcctgccgcctgctggtgggtaaccagtgccttccctgtaacggtaatgctgcagaactgcaacctttgtacctttcttttgggggactgggtgggggttgaagaagagatagatggggcagaaatacccccaacccaagcctcctgccagaatgccagctattttgcatattgaaggaatttacttcacattcattaagcttttaaaaagatcacaacctcaagatggttaaaatccattgacatttgcactttcagacctgacaagtttcagagctgctgagatgactggcccctggcctttccatttatgtctcctctactttctgcccccactcctcccaccctggccaggtctggagttagtggcatagcatttctcacacttggctgtggcggcggcggcggcttctttttttttccttcccttcttcccctgatggtcaagtctcttatgtttcaatatttctgaactgggggtatcataaaacaaaaatttccttaggtttaagagaagaaaaaagagagaagcaaaatatttttataccattacttgagtctattgccaaaatctggaaatctttcccatgcccacagagtttacataccagaaacattgagccatca
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]