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2024-03-29 15:25:16, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_004065250             690 bp    mRNA    linear   PRI 21-APR-2023
DEFINITION  PREDICTED: Gorilla gorilla gorilla claudin 25 (CLDN25), mRNA.
ACCESSION   XM_004065250
VERSION     XM_004065250.1
DBLINK      BioProject: PRJNA953048
KEYWORDS    RefSeq; corrected model.
SOURCE      Gorilla gorilla gorilla (western lowland gorilla)
  ORGANISM  Gorilla gorilla gorilla
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Gorilla.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_073235) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_029281585.1-RS_2023_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/14/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-219               JARGGP010000012.1  123877844-123878062
            220-690             JARGGP010000012.1  123878064-123878534
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Gorilla gorilla gorilla"
                     /mol_type="mRNA"
                     /isolate="KB3781"
                     /sub_species="gorilla"
                     /db_xref="taxon:9595"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="Fibroblast"
                     /dev_stage="Mature"
     gene            1..690
                     /gene="CLDN25"
                     /note="claudin 25; The sequence of the model RefSeq
                     transcript was modified relative to its source genomic
                     sequence to represent the inferred CDS: deleted 1 base in
                     1 codon; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins"
                     /db_xref="GeneID:101153547"
     CDS             1..690
                     /gene="CLDN25"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: putative claudin-25"
                     /protein_id="XP_004065298.1"
                     /db_xref="GeneID:101153547"
                     /translation="
MAWSFRAKVQLGGLLLSLLGWVCSCVTTILPQWKTLNLELNEMETWIMGIWEVCVDREEVATVCKAFESFLSLPQELQVARILMVASHGLGLLGLLLSSFGSECFQFHRIRWVFKRRLGLLGGTLEASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGGLLLIFSACLGKEDVPFPLMAGSTVPLSCAPVEESDGSFHLMLRPRNLVI"
     misc_feature    76..549
                     /gene="CLDN25"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:451326"
ORIGIN      
atggcctggagtttccgtgcaaaagtccagctcggggggctacttctctccctccttggctgggtctgctcctgtgttaccaccatcctgccccagtggaagactcttaatctggaactgaacgagatggagacctggatcatggggatttgggaggtctgcgtggatcgagaggaagtcgccactgtgtgcaaggccttcgaatccttcttgtctctgccccaggagctccaggtagcccgcatcctcatggtagcctcccatgggctgggcctattggggcttttgctctccagctttgggtctgaatgcttccagtttcacaggatcagatgggtattcaagaggcggcttggtctcctgggagggactttggaggcatccgcttcagccactaccctccttccagtctcctgggtggcccatgccacaatccaagacttctgggatgacagcatccctgacatcatacctcggtgggagtttggaggtgccctctacttgggctgggctgctggtattttcctggctcttggtgggctactcctcatcttctcggcctgcctgggaaaagaagatgtgccttttcctttgatggctggttccacagtccccctatcctgtgctccagtggaggagtcagatggctccttccacctcatgctaagacctaggaacctggtcatctag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]