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2024-03-29 08:40:50, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_003969270            3981 bp    mRNA    linear   VRT 05-JUL-2019
DEFINITION  PREDICTED: Takifugu rubripes argonaute RISC catalytic component 2
            (LOC101079678), mRNA.
ACCESSION   XM_003969270
VERSION     XM_003969270.3
DBLINK      BioProject: PRJNA543527
KEYWORDS    RefSeq.
SOURCE      Takifugu rubripes (Fugu rubripes)
  ORGANISM  Takifugu rubripes
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea;
            Tetraodontidae; Takifugu.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_042296.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 5, 2019 this sequence version replaced XM_003969270.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Takifugu rubripes Annotation Release
                                           103
            Annotation Version          :: 103
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3981
                     /organism="Takifugu rubripes"
                     /mol_type="mRNA"
                     /db_xref="taxon:31033"
                     /chromosome="12"
     gene            1..3981
                     /gene="LOC101079678"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 24 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 28 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:101079678"
     CDS             243..2855
                     /gene="LOC101079678"
                     /codon_start=1
                     /product="protein argonaute-2"
                     /protein_id="XP_003969319.1"
                     /db_xref="GeneID:101079678"
                     /translation="
MYSSAGASEMPEGPRSSGSTGSGQSSSPVPEYVFKPPSRPDFGTMGRTIKLQANFFEMEIPKLEVYHYDIDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVYDGRKNLYTAMPLPIGRDKVELEVTIPGEGKDRSFKVSIKWVSCVSLQALHEALSGRLPSVPFETVQALDVVMRHLPSMRYTPVGRSFFTPSEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFMCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQENGQTIECTVAQYFKDKYKLILRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQDEISKLMRSANFNTDPYVREFGVMVRDEMTEVNGRVLQAPSILYGGRNKAIATPIQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTELLLKAFTDQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKYTYQGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQVKNVQKTTPQTLSNLCLKINVKLGGVNNILLPQGRPLVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQQHRQDIIQDLATMVRELLIQFYKSTRFKPTRIIYYRDGISEGQFNQVLQHELLAIREACIKLEKDYQPGITFVVVQKRHHTRLFCMDRNERVGKSGNIPAGTTVDTKITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNHFSSDELQVLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQIHQDTLRTMYFA"
     misc_feature    549..773
                     /gene="LOC101079678"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    801..953
                     /gene="LOC101079678"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    954..1316
                     /gene="LOC101079678"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1110..1112,1155..1157,1197..1199,1209..1211,
                     1263..1265,1284..1286,1290..1292)
                     /gene="LOC101079678"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1449..2726
                     /gene="LOC101079678"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1860..1862,1872..1874,1908..1919,1926..1928,
                     1950..1952,1959..1961,1971..1973,1983..1985)
                     /gene="LOC101079678"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2064..2066,2070..2072,2280..2282,2694..2696)
                     /gene="LOC101079678"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
tattgcgctatcttttctctcggctcccgttttgtgtgctggggggatggggccgttccgaggatgagacactccaaatatttaccacttggattaccaaaaaacttcatttccgaacggagctatttatttctctcatatacatattaatgctttccgaacacgcatgagtctgagtggattttggtcaaaataaagtggagtgtatttgtacgtccacgacacgtttataagtcgacaaaatgtattcctctgctggagcttctgaaatgcccgagggaccccggtcatctgggtcaacaggctctggtcagtcatcttccccggtacctgaatatgttttcaagccgccatcacggccagattttggcaccatgggcaggacaatcaagctccaggccaacttttttgagatggaaatccctaaactggaagtctatcattatgacattgacataaagcctgagaagtgcccccgccgggttaatcgtgagatcgtggaacacatggttcaacactttaaaacccaaatctttggggatcgaaagccagtgtatgatgggaggaagaacctctacactgccatgcccttacccatcggcagagacaaagtggagcttgaggtcaccattccgggagagggcaaagaccgcagcttcaaagtgtcgatcaaatgggtgtcgtgcgtgagcctccaagcactgcacgaggcgctgtcaggacgcctccccagcgtccccttcgagactgtccaagccttggatgtggtcatgagacatttgccctccatgaggtacacaccagtgggccgctctttcttcaccccttcagaagggtgttccaacccgctgggtggtggcagagaggtgtggttcggcttccaccagtcggtcaggccttccctctggaagatgatgctcaacatcgatgtgtcggccactgctttctacaaggcccagcctgtgatcgagttcatgtgcgaagttctggatttcaaaagcattgaagaacaacagaagcccttaacagactctcagcgagtgaaattcacaaaggaaatcaaaggcctaaaggtggagatcactcactgtgggcagatgaagagaaagtacagagtgtgtaacgtgacccggagaccggccagccatcaaacgttccctctgcagcaggagaacggccaaactattgaatgcacagtagcacagtacttcaaggacaagtacaaactcatcctgaggtacccccacctgccgtgtctccaggtggggcaggagcagaagcacacctaccttcctcttgaggtctgcaacatagtggctgggcagcgctgcatcaaaaagctgacggacaatcagacctccaccatgatccgtgccaccgcgcggtcggcgccagaccggcaggatgaaattagcaaattgatgagaagtgccaacttcaacaccgacccttacgtccgagaatttggagtgatggtgcgagacgagatgacggaagtgaacggccgcgtcctccaagcaccttccatcctgtacggaggcaggaacaaagcaatcgccacgccgatccagggagtgtgggacatgaggaacaaacagttccacacgggcattgagatcaaagtgtgggccatcgcttgctttgcacctcagcggcagtgcactgaactcctgctcaaagctttcacggatcagctgaggaagatctccagagacgcggggatgcccatccagggtcagccgtgcttctgcaagtacgcccagggggcggacagcgtggagcccatgttcaggcacctgaagtacacctaccagggcctccagctggtggtcgtcatcttacctgggaagactcccgtttatgccgaggtgaagcgtgttggcgacacggtacttggcatggcgacgcagtgcgtgcaggtgaagaacgtccagaagacgactcctcagaccctctccaacctgtgtctgaagatcaacgtcaaactgggcggggtcaataacatcctcctcccacagggcagaccgctggtcttccagcaaccggtgattttccttggtgcagatgtgacccatcctccagccggggatggtaaaaagccctccattgctgctgttgttggtagcatggacgcccaccccagccgatactgtgccacggtgcgtgtgcagcagcatcgccaggacatcatccaggacctggccaccatggtgagggagctcctcatccagttctacaaatccactcgcttcaagcccaccagaatcatctactaccgcgacggcatttctgagggccagttcaaccaggtgctccaacacgagctgctggccatccgggaggcctgtataaaactggagaaggactaccagccgggaatcacctttgtggtcgtgcaaaagaggcaccacaccagactgttctgcatggacagaaacgagagggtcgggaagagcggcaacattcccgcaggcaccacggtcgacaccaaaatcactcatccgtcagagtttgacttctacctgtgcagtcacgctggcattcagggaaccagcaggccctctcattaccatgtgctctgggacgacaaccacttctcttctgacgaactgcaagtcctcacctaccagctgtgccacacgtacgtgcgctgcacacgctccgtctccatcccagcaccagcttactacgcccatctggtggctttccgtgcccgctaccacctggtggacaaagagcacgacagtgctgagggcagccacacgtcggggcagagcaacggacgcgaccaccaggccttggccaaggccgttcagatccaccaggacactctacgcaccatgtacttcgcctgagagcgcacaaccccagatgtgggtgggtgagaccccactgacgacacgcactaaccctgggctgtctcactgccaggaaccaagtggttccccctccccacctagctaacctgtcacgagatggtgtgtttacacttgtacttgagcccctgaaaacccaaaaacaagccagcgtttcgaggcaaaaagcccctctgtcggggtttttgctggaagagttttaatttacatgttgtgcgtaggtgtgtgtgttttaagataaatctgtcccacgacagagaagcgaggcagcgatagtcatgtaggtgacctgcgagcgagacgttaacccccccccagctcctgtttctggtttttggtgcttgaaaggacatgatgctgagagctggttcatgtttttacctaaagatttacgtaaaggatcattttgtcacctaaacggagcacgtgcggcgagcagaccgggtcatgtggtgcgtttcaccacacgtggcgccgtcagaaccttgattctctgggtgggtggcgagagagcgaccaaacgacgcctgtaagagaactctgagcggcgccggtttctgtgaagaacccccctttaaagagctgagccgtgtccagaagaggcaggagggggaactccatcatttcttccccttcgcttttatagtctcatttcatttttgtctctttttttagtctttttttttttctctcccaagaaatatgcaggtagaggatttatgttttaggctttgaggtttttaagatacttacgtttcttcctttatacaggttagccctgcgtccttagtgaggacgctagcagcaggttagagtgtttctgggatggcggaagctgcaacagtaaagtgatccaagttcccttcaaggttaagcatacgctccagaaattgggaatgggcatcacaccaaaagcttggctttatgcaaatgatgagtctttctacttgtggttttggtttcttttaaataagctttctgtggaggctgctgaaaatattagagatttattcaaaaacgtctggcgcacatgtattccaaattatcacctcttcatatagatactctcttgccttttaaagacttttgcagtctaattattcag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]