2024-03-29 08:40:50, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_003969270 3981 bp mRNA linear VRT 05-JUL-2019 DEFINITION PREDICTED: Takifugu rubripes argonaute RISC catalytic component 2 (LOC101079678), mRNA. ACCESSION XM_003969270 VERSION XM_003969270.3 DBLINK BioProject: PRJNA543527 KEYWORDS RefSeq. SOURCE Takifugu rubripes (Fugu rubripes) ORGANISM Takifugu rubripes Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_042296.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 5, 2019 this sequence version replaced XM_003969270.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Takifugu rubripes Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3981 /organism="Takifugu rubripes" /mol_type="mRNA" /db_xref="taxon:31033" /chromosome="12" gene 1..3981 /gene="LOC101079678" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns" /db_xref="GeneID:101079678" CDS 243..2855 /gene="LOC101079678" /codon_start=1 /product="protein argonaute-2" /protein_id="XP_003969319.1" /db_xref="GeneID:101079678" /translation="
MYSSAGASEMPEGPRSSGSTGSGQSSSPVPEYVFKPPSRPDFGTMGRTIKLQANFFEMEIPKLEVYHYDIDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVYDGRKNLYTAMPLPIGRDKVELEVTIPGEGKDRSFKVSIKWVSCVSLQALHEALSGRLPSVPFETVQALDVVMRHLPSMRYTPVGRSFFTPSEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFMCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQENGQTIECTVAQYFKDKYKLILRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQDEISKLMRSANFNTDPYVREFGVMVRDEMTEVNGRVLQAPSILYGGRNKAIATPIQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTELLLKAFTDQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKYTYQGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQVKNVQKTTPQTLSNLCLKINVKLGGVNNILLPQGRPLVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQQHRQDIIQDLATMVRELLIQFYKSTRFKPTRIIYYRDGISEGQFNQVLQHELLAIREACIKLEKDYQPGITFVVVQKRHHTRLFCMDRNERVGKSGNIPAGTTVDTKITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNHFSSDELQVLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQIHQDTLRTMYFA"
misc_feature 549..773 /gene="LOC101079678" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 801..953 /gene="LOC101079678" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 954..1316 /gene="LOC101079678" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1110..1112,1155..1157,1197..1199,1209..1211, 1263..1265,1284..1286,1290..1292) /gene="LOC101079678" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1449..2726 /gene="LOC101079678" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1860..1862,1872..1874,1908..1919,1926..1928, 1950..1952,1959..1961,1971..1973,1983..1985) /gene="LOC101079678" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2064..2066,2070..2072,2280..2282,2694..2696) /gene="LOC101079678" /note="active site" /db_xref="CDD:240015" ORIGIN
tattgcgctatcttttctctcggctcccgttttgtgtgctggggggatggggccgttccgaggatgagacactccaaatatttaccacttggattaccaaaaaacttcatttccgaacggagctatttatttctctcatatacatattaatgctttccgaacacgcatgagtctgagtggattttggtcaaaataaagtggagtgtatttgtacgtccacgacacgtttataagtcgacaaaatgtattcctctgctggagcttctgaaatgcccgagggaccccggtcatctgggtcaacaggctctggtcagtcatcttccccggtacctgaatatgttttcaagccgccatcacggccagattttggcaccatgggcaggacaatcaagctccaggccaacttttttgagatggaaatccctaaactggaagtctatcattatgacattgacataaagcctgagaagtgcccccgccgggttaatcgtgagatcgtggaacacatggttcaacactttaaaacccaaatctttggggatcgaaagccagtgtatgatgggaggaagaacctctacactgccatgcccttacccatcggcagagacaaagtggagcttgaggtcaccattccgggagagggcaaagaccgcagcttcaaagtgtcgatcaaatgggtgtcgtgcgtgagcctccaagcactgcacgaggcgctgtcaggacgcctccccagcgtccccttcgagactgtccaagccttggatgtggtcatgagacatttgccctccatgaggtacacaccagtgggccgctctttcttcaccccttcagaagggtgttccaacccgctgggtggtggcagagaggtgtggttcggcttccaccagtcggtcaggccttccctctggaagatgatgctcaacatcgatgtgtcggccactgctttctacaaggcccagcctgtgatcgagttcatgtgcgaagttctggatttcaaaagcattgaagaacaacagaagcccttaacagactctcagcgagtgaaattcacaaaggaaatcaaaggcctaaaggtggagatcactcactgtgggcagatgaagagaaagtacagagtgtgtaacgtgacccggagaccggccagccatcaaacgttccctctgcagcaggagaacggccaaactattgaatgcacagtagcacagtacttcaaggacaagtacaaactcatcctgaggtacccccacctgccgtgtctccaggtggggcaggagcagaagcacacctaccttcctcttgaggtctgcaacatagtggctgggcagcgctgcatcaaaaagctgacggacaatcagacctccaccatgatccgtgccaccgcgcggtcggcgccagaccggcaggatgaaattagcaaattgatgagaagtgccaacttcaacaccgacccttacgtccgagaatttggagtgatggtgcgagacgagatgacggaagtgaacggccgcgtcctccaagcaccttccatcctgtacggaggcaggaacaaagcaatcgccacgccgatccagggagtgtgggacatgaggaacaaacagttccacacgggcattgagatcaaagtgtgggccatcgcttgctttgcacctcagcggcagtgcactgaactcctgctcaaagctttcacggatcagctgaggaagatctccagagacgcggggatgcccatccagggtcagccgtgcttctgcaagtacgcccagggggcggacagcgtggagcccatgttcaggcacctgaagtacacctaccagggcctccagctggtggtcgtcatcttacctgggaagactcccgtttatgccgaggtgaagcgtgttggcgacacggtacttggcatggcgacgcagtgcgtgcaggtgaagaacgtccagaagacgactcctcagaccctctccaacctgtgtctgaagatcaacgtcaaactgggcggggtcaataacatcctcctcccacagggcagaccgctggtcttccagcaaccggtgattttccttggtgcagatgtgacccatcctccagccggggatggtaaaaagccctccattgctgctgttgttggtagcatggacgcccaccccagccgatactgtgccacggtgcgtgtgcagcagcatcgccaggacatcatccaggacctggccaccatggtgagggagctcctcatccagttctacaaatccactcgcttcaagcccaccagaatcatctactaccgcgacggcatttctgagggccagttcaaccaggtgctccaacacgagctgctggccatccgggaggcctgtataaaactggagaaggactaccagccgggaatcacctttgtggtcgtgcaaaagaggcaccacaccagactgttctgcatggacagaaacgagagggtcgggaagagcggcaacattcccgcaggcaccacggtcgacaccaaaatcactcatccgtcagagtttgacttctacctgtgcagtcacgctggcattcagggaaccagcaggccctctcattaccatgtgctctgggacgacaaccacttctcttctgacgaactgcaagtcctcacctaccagctgtgccacacgtacgtgcgctgcacacgctccgtctccatcccagcaccagcttactacgcccatctggtggctttccgtgcccgctaccacctggtggacaaagagcacgacagtgctgagggcagccacacgtcggggcagagcaacggacgcgaccaccaggccttggccaaggccgttcagatccaccaggacactctacgcaccatgtacttcgcctgagagcgcacaaccccagatgtgggtgggtgagaccccactgacgacacgcactaaccctgggctgtctcactgccaggaaccaagtggttccccctccccacctagctaacctgtcacgagatggtgtgtttacacttgtacttgagcccctgaaaacccaaaaacaagccagcgtttcgaggcaaaaagcccctctgtcggggtttttgctggaagagttttaatttacatgttgtgcgtaggtgtgtgtgttttaagataaatctgtcccacgacagagaagcgaggcagcgatagtcatgtaggtgacctgcgagcgagacgttaacccccccccagctcctgtttctggtttttggtgcttgaaaggacatgatgctgagagctggttcatgtttttacctaaagatttacgtaaaggatcattttgtcacctaaacggagcacgtgcggcgagcagaccgggtcatgtggtgcgtttcaccacacgtggcgccgtcagaaccttgattctctgggtgggtggcgagagagcgaccaaacgacgcctgtaagagaactctgagcggcgccggtttctgtgaagaacccccctttaaagagctgagccgtgtccagaagaggcaggagggggaactccatcatttcttccccttcgcttttatagtctcatttcatttttgtctctttttttagtctttttttttttctctcccaagaaatatgcaggtagaggatttatgttttaggctttgaggtttttaagatacttacgtttcttcctttatacaggttagccctgcgtccttagtgaggacgctagcagcaggttagagtgtttctgggatggcggaagctgcaacagtaaagtgatccaagttcccttcaaggttaagcatacgctccagaaattgggaatgggcatcacaccaaaagcttggctttatgcaaatgatgagtctttctacttgtggttttggtttcttttaaataagctttctgtggaggctgctgaaaatattagagatttattcaaaaacgtctggcgcacatgtattccaaattatcacctcttcatatagatactctcttgccttttaaagacttttgcagtctaattattcag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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