GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-04-25 22:42:48, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_003895558            4325 bp    mRNA    linear   PRI 20-NOV-2019
DEFINITION  PREDICTED: Papio anubis claudin 17 (CLDN17), mRNA.
ACCESSION   XM_003895558
VERSION     XM_003895558.5
DBLINK      BioProject: PRJNA576697
KEYWORDS    RefSeq.
SOURCE      Papio anubis (olive baboon)
  ORGANISM  Papio anubis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Cercopithecidae; Cercopithecinae; Papio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_044979.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Nov 20, 2019 this sequence version replaced XM_003895558.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Papio anubis Annotation Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4325
                     /organism="Papio anubis"
                     /mol_type="mRNA"
                     /isolate="15944"
                     /db_xref="taxon:9555"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="whole blood"
     gene            1..4325
                     /gene="CLDN17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:101020994"
     CDS             1974..2648
                     /gene="CLDN17"
                     /codon_start=1
                     /product="claudin-17"
                     /protein_id="XP_003895607.1"
                     /db_xref="GeneID:101020994"
                     /translation="
MAFYPLQIAGLVLGFLGMVGTLATTLLPQWRVSAFVGSNIIVFERLWEGLWMNCIRQARARLQCKFYSSLLALPPVLETARALMCVAVALSLIALLIGICGMKQVQCMGSNERTKAYLLGTSGVLFILTGIFVLIPVSWTANIIIRDFYNPAVHIGQKRELGAALFLGWASAAVLFIGGGLLCGFCCCNRKKQRYRYPVPGHCVPHTDKRRNMKMPSNTSTSYV"
     misc_feature    1989..2519
                     /gene="CLDN17"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:451326"
ORIGIN      
accactatacccagcctcagatttttatatttaaaccaacgtatgttttcacttataatacagacaatatgctctagctgatgagaaagcaaataattggaaaaaaatgttggaaacttccaggccaaaatgagcatagcaagacatctgagatagaatgaggaagaggaaatagaatgaggaagaggaactagaatgaggaagaagacccagaagtaacaagtcagagtaatgctggaaaatcctgtcagggagggaatggttaagcctatgtctcagtaaccatgaacaaagggccaaagaaacccttcatccaatctggtgttgggaaactgttaacaacacagaagtcatctgtttgctcaatgattcacattccttagagagggagttctcagaccaatcatcttgaaaactcaatggttttcacattcatgaagtcagtgaatggactctaattctggttgtcattggaccacccattaaatctttggcctgtaactgattgagatggaggacattttgcaaaccgtgatgtctcccacctggagtgtggttggcgtgcttgctttggagtcattttcatccttacaatagatcccttgccagtgggatgtaaaaggaaaaggaaaaaggtccacttttcccacacgaagccccccactgcctctagggagtggcaggaaagtggcagtcaaaagttacaacttgacttaaattttgaaataatctcaactgaatttttcttcctttgaaaaccatttgaaaaactgtagatagtgccacatttctactaggtttagtcccacttatatgaaaagattgaaaaagtaatctctccttcctatttttgaatcagactagacagagaaagtaagcatagttagttacagacctgggcttgtccctggatcagttgccgcatggcttgtctcagccaaacactttgcacaccttccgttcatctggcaaataagggtgttaagtttgatggccttgaagataacttccagcactaaaatgttctctagcgtctaaatttcaagtgactgcatagccaatttcaagggccacttttatattgttccataaaaatgaaaggtacgtgtttggccttaataaatgtgatctatttcaagctgccattgaagaaacactgaatgaaagtttccatactaaacattacttaacagagagaggtgttacttaacagttaaagtaataattaacagttcattcaaattaattataaggaatacttctctgttttcttcttttctgggtcttaagagtaaactatgaaatgtgaatttcttgtttagggctcctcctaagtatcaatagttttcgtgtgtcttgaaactaatacgtaaacatttctgcatatcgaggtatctttattaaagccagaattgattaccatcttaaggaaaagtggcttacactagaataaagtaataaagtccaaaatgttttttaattactctccaatgaactgacaaggttttggcattgtcttcagctgtgccttaacacatatatttatacttttatatcagagtgattttttacacaggaagtttcagctctgtaattagcaattcacaatggaaactttgacacttaattacagcattgctaagacaataataatgtgagaaatcctaaagctgaatgcagtatttcttgacacacccctagctaccttcttattggctgggaaacaattatatatgactagtaaataatccatagagaaatgaatgtgtatgaaaaaaggcaacatgcatttacaacaggtacttctagttaggccaagttcagtcacagccactgatttggactaaaatgatatgggcagcagccaaggagaacatcatcaaagacttctctagactcaagagccttccaccttctacatcttgagcatcttctaccactccgaattggactagtcttcaaagtaaaaggcaatggcattttatcccttgcaaattgctgggctggttcttgggttccttggcatggtggggactcttgccacaacgcttctgcctcagtggagagtatcagcttttgttggcagcaacattattgtctttgagaggctctgggaagggctctggatgaactgcatccgacaagccagggcccggttgcaatgcaagttctatagttcattgttggctcttccgcctgtcctggaaacagcccgggcactcatgtgtgtggctgttgctctctccttgatcgccctacttattggcatctgtggcatgaagcaggtccagtgcatgggctctaatgagaggaccaaagcataccttctgggaacttcaggagtcctcttcatcctgacgggcatcttcgttctgattccggtgagctggacagccaatataatcatcagagatttctacaacccagctgtccacataggtcagaaacgagagctgggagcagcacttttccttggctgggcaagcgctgctgtcctcttcattggaggtggtctgctttgtggattttgctgctgcaacagaaagaagcaaaggtacagatatccagtgcctggccactgtgtgccacacacagataagcgaagaaacatgaaaatgcctagtaatacctccaccagttatgtctaatgcctgtttttggctccaagtgtggactatggtcaatgtttgttataaagtccagctagaaactgtaagtatgtgaggcaggagaacttgctttatgtctagatttaaattgatatgaaagtttcaatttgttactggtaggaaaacttggacattctgacttcaggtgtattaaatgcatttactattgttggactcaattgctgttccaatgttcatattctaaatgtaagtatacccataatcattatcaagtgtacaatgatggactactagtttttgaccatcatattttatctgataagaatcaaaatttgaaattgatattctataacaataaaacatatacctattctaaaatgtaagctattatttttcctctacattgtttcttgtactacacactaacaacgaaatgatgacctttttcaaaagattatcatggaaaattgtagatatcaaacaataatttttagttgaaaatgtcaaaacatgaaaatgtccatctaatgaaagactttattcctttaggaactcacacaattacaattagacactttagtgaaaagggagctctgatttatcttaggacaattaagaagacagattttaaggtctctaatttatacagttaaacttgcctagaatcactgtttaaaggaaaataatttataaatgaaaaataatatttttcatagcctatcatctgtacttcaagcaaacagaagcatctatcttgataagacacatcaatggaaggctattaacactcaattcttatctagaggttatacggtcccaattagagaattgcagttggggcattgaagggaatggtttctattctttgttttattctttagtcattgcacaggtacaaacatgctaagcaattcgaagaattaaggttatgatttagacaagtagtcaggctaagttaaataccttttttgtattctctactaaacaaataggtatggtgaaaatatttttgttttgcttgaattacatgcacaattttctcaatacttcatttcccatgtgtacatatcaatatcagggttaaaagtgtggtggatcatgtggggtaagagtgagtggggagtgtttatgaggcaagaccacctgtatgggttgcttctgaatagcttttacgtcttgtgaatcaatcaatttttatatgttcagttttaactcttcaaatattgtgcttattttgtaataaaaatgtatttaattttgagtatataattgcaatgagaagcctgaatttgctcaccaaatatttattgcatcttcatccttattataatgaaataaaatagattacaatgatgttgatatatttagctgtggggtcaattagaataaatttctgtcctcacaagatcacctagtaactctgaaacattaaatcagggataactcaagcctggatgttaatatccaaccttcactccattctacaaaccaccagcaagatgtcagtaggtgaagcccctggtaatgtaaaactgtatttaaaacactggtaatattaaatgataagatcacacaagtataaatatcttcaaagattagcaataaaaataagaaaaacagtgattaagatgaatttttcttaagattgattttttttaatcagacttaattcagaaaggcctaatattgggtatg
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]