2024-04-25 22:42:48, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_003895558 4325 bp mRNA linear PRI 20-NOV-2019 DEFINITION PREDICTED: Papio anubis claudin 17 (CLDN17), mRNA. ACCESSION XM_003895558 VERSION XM_003895558.5 DBLINK BioProject: PRJNA576697 KEYWORDS RefSeq. SOURCE Papio anubis (olive baboon) ORGANISM Papio anubis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_044979.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Nov 20, 2019 this sequence version replaced XM_003895558.4. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Papio anubis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4325 /organism="Papio anubis" /mol_type="mRNA" /isolate="15944" /db_xref="taxon:9555" /chromosome="4" /sex="male" /tissue_type="whole blood" gene 1..4325 /gene="CLDN17" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:101020994" CDS 1974..2648 /gene="CLDN17" /codon_start=1 /product="claudin-17" /protein_id="XP_003895607.1" /db_xref="GeneID:101020994" /translation="
MAFYPLQIAGLVLGFLGMVGTLATTLLPQWRVSAFVGSNIIVFERLWEGLWMNCIRQARARLQCKFYSSLLALPPVLETARALMCVAVALSLIALLIGICGMKQVQCMGSNERTKAYLLGTSGVLFILTGIFVLIPVSWTANIIIRDFYNPAVHIGQKRELGAALFLGWASAAVLFIGGGLLCGFCCCNRKKQRYRYPVPGHCVPHTDKRRNMKMPSNTSTSYV"
misc_feature 1989..2519 /gene="CLDN17" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN
accactatacccagcctcagatttttatatttaaaccaacgtatgttttcacttataatacagacaatatgctctagctgatgagaaagcaaataattggaaaaaaatgttggaaacttccaggccaaaatgagcatagcaagacatctgagatagaatgaggaagaggaaatagaatgaggaagaggaactagaatgaggaagaagacccagaagtaacaagtcagagtaatgctggaaaatcctgtcagggagggaatggttaagcctatgtctcagtaaccatgaacaaagggccaaagaaacccttcatccaatctggtgttgggaaactgttaacaacacagaagtcatctgtttgctcaatgattcacattccttagagagggagttctcagaccaatcatcttgaaaactcaatggttttcacattcatgaagtcagtgaatggactctaattctggttgtcattggaccacccattaaatctttggcctgtaactgattgagatggaggacattttgcaaaccgtgatgtctcccacctggagtgtggttggcgtgcttgctttggagtcattttcatccttacaatagatcccttgccagtgggatgtaaaaggaaaaggaaaaaggtccacttttcccacacgaagccccccactgcctctagggagtggcaggaaagtggcagtcaaaagttacaacttgacttaaattttgaaataatctcaactgaatttttcttcctttgaaaaccatttgaaaaactgtagatagtgccacatttctactaggtttagtcccacttatatgaaaagattgaaaaagtaatctctccttcctatttttgaatcagactagacagagaaagtaagcatagttagttacagacctgggcttgtccctggatcagttgccgcatggcttgtctcagccaaacactttgcacaccttccgttcatctggcaaataagggtgttaagtttgatggccttgaagataacttccagcactaaaatgttctctagcgtctaaatttcaagtgactgcatagccaatttcaagggccacttttatattgttccataaaaatgaaaggtacgtgtttggccttaataaatgtgatctatttcaagctgccattgaagaaacactgaatgaaagtttccatactaaacattacttaacagagagaggtgttacttaacagttaaagtaataattaacagttcattcaaattaattataaggaatacttctctgttttcttcttttctgggtcttaagagtaaactatgaaatgtgaatttcttgtttagggctcctcctaagtatcaatagttttcgtgtgtcttgaaactaatacgtaaacatttctgcatatcgaggtatctttattaaagccagaattgattaccatcttaaggaaaagtggcttacactagaataaagtaataaagtccaaaatgttttttaattactctccaatgaactgacaaggttttggcattgtcttcagctgtgccttaacacatatatttatacttttatatcagagtgattttttacacaggaagtttcagctctgtaattagcaattcacaatggaaactttgacacttaattacagcattgctaagacaataataatgtgagaaatcctaaagctgaatgcagtatttcttgacacacccctagctaccttcttattggctgggaaacaattatatatgactagtaaataatccatagagaaatgaatgtgtatgaaaaaaggcaacatgcatttacaacaggtacttctagttaggccaagttcagtcacagccactgatttggactaaaatgatatgggcagcagccaaggagaacatcatcaaagacttctctagactcaagagccttccaccttctacatcttgagcatcttctaccactccgaattggactagtcttcaaagtaaaaggcaatggcattttatcccttgcaaattgctgggctggttcttgggttccttggcatggtggggactcttgccacaacgcttctgcctcagtggagagtatcagcttttgttggcagcaacattattgtctttgagaggctctgggaagggctctggatgaactgcatccgacaagccagggcccggttgcaatgcaagttctatagttcattgttggctcttccgcctgtcctggaaacagcccgggcactcatgtgtgtggctgttgctctctccttgatcgccctacttattggcatctgtggcatgaagcaggtccagtgcatgggctctaatgagaggaccaaagcataccttctgggaacttcaggagtcctcttcatcctgacgggcatcttcgttctgattccggtgagctggacagccaatataatcatcagagatttctacaacccagctgtccacataggtcagaaacgagagctgggagcagcacttttccttggctgggcaagcgctgctgtcctcttcattggaggtggtctgctttgtggattttgctgctgcaacagaaagaagcaaaggtacagatatccagtgcctggccactgtgtgccacacacagataagcgaagaaacatgaaaatgcctagtaatacctccaccagttatgtctaatgcctgtttttggctccaagtgtggactatggtcaatgtttgttataaagtccagctagaaactgtaagtatgtgaggcaggagaacttgctttatgtctagatttaaattgatatgaaagtttcaatttgttactggtaggaaaacttggacattctgacttcaggtgtattaaatgcatttactattgttggactcaattgctgttccaatgttcatattctaaatgtaagtatacccataatcattatcaagtgtacaatgatggactactagtttttgaccatcatattttatctgataagaatcaaaatttgaaattgatattctataacaataaaacatatacctattctaaaatgtaagctattatttttcctctacattgtttcttgtactacacactaacaacgaaatgatgacctttttcaaaagattatcatggaaaattgtagatatcaaacaataatttttagttgaaaatgtcaaaacatgaaaatgtccatctaatgaaagactttattcctttaggaactcacacaattacaattagacactttagtgaaaagggagctctgatttatcttaggacaattaagaagacagattttaaggtctctaatttatacagttaaacttgcctagaatcactgtttaaaggaaaataatttataaatgaaaaataatatttttcatagcctatcatctgtacttcaagcaaacagaagcatctatcttgataagacacatcaatggaaggctattaacactcaattcttatctagaggttatacggtcccaattagagaattgcagttggggcattgaagggaatggtttctattctttgttttattctttagtcattgcacaggtacaaacatgctaagcaattcgaagaattaaggttatgatttagacaagtagtcaggctaagttaaataccttttttgtattctctactaaacaaataggtatggtgaaaatatttttgttttgcttgaattacatgcacaattttctcaatacttcatttcccatgtgtacatatcaatatcagggttaaaagtgtggtggatcatgtggggtaagagtgagtggggagtgtttatgaggcaagaccacctgtatgggttgcttctgaatagcttttacgtcttgtgaatcaatcaatttttatatgttcagttttaactcttcaaatattgtgcttattttgtaataaaaatgtatttaattttgagtatataattgcaatgagaagcctgaatttgctcaccaaatatttattgcatcttcatccttattataatgaaataaaatagattacaatgatgttgatatatttagctgtggggtcaattagaataaatttctgtcctcacaagatcacctagtaactctgaaacattaaatcagggataactcaagcctggatgttaatatccaaccttcactccattctacaaaccaccagcaagatgtcagtaggtgaagcccctggtaatgtaaaactgtatttaaaacactggtaatattaaatgataagatcacacaagtataaatatcttcaaagattagcaataaaaataagaaaaacagtgattaagatgaatttttcttaagattgattttttttaatcagacttaattcagaaaggcctaatattgggtatg
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]