2024-04-20 04:45:40, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_003846808 813 bp mRNA linear PLN 06-FEB-2020 DEFINITION Zymoseptoria tritici IPO323 uncharacterized protein (MYCGRDRAFT_98091), partial mRNA. ACCESSION XM_003846808 VERSION XM_003846808.1 DBLINK BioProject: PRJNA170847 BioSample: SAMN02746078 KEYWORDS RefSeq. SOURCE Zymoseptoria tritici IPO323 (Mycosphaerella graminicola IPO323) ORGANISM Zymoseptoria tritici IPO323 Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Dothideomycetidae; Mycosphaerellales; Mycosphaerellaceae; Zymoseptoria. REFERENCE 1 (bases 1 to 813) AUTHORS Goodwin,S.B., Ben M'barek,S., Dhillon,B., Wittenberg,A.H., Crane,C.F., Hane,J.K., Foster,A.J., Van der Lee,T.A., Grimwood,J., Aerts,A., Antoniw,J., Bailey,A., Bluhm,B., Bowler,J., Bristow,J., van der Burgt,A., Canto-Canche,B., Churchill,A.C., Conde-Ferraez,L., Cools,H.J., Coutinho,P.M., Csukai,M., Dehal,P., De Wit,P., Donzelli,B., van de Geest,H.C., van Ham,R.C., Hammond-Kosack,K.E., Henrissat,B., Kilian,A., Kobayashi,A.K., Koopmann,E., Kourmpetis,Y., Kuzniar,A., Lindquist,E., Lombard,V., Maliepaard,C., Martins,N., Mehrabi,R., Nap,J.P., Ponomarenko,A., Rudd,J.J., Salamov,A., Schmutz,J., Schouten,H.J., Shapiro,H., Stergiopoulos,I., Torriani,S.F., Tu,H., de Vries,R.P., Waalwijk,C., Ware,S.B., Wiebenga,A., Zwiers,L.H., Oliver,R.P., Grigoriev,I.V. and Kema,G.H. TITLE Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis JOURNAL PLoS Genet. 7 (6), E1002070 (2011) PUBMED 21695235 REFERENCE 2 (bases 1 to 813) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (06-FEB-2020) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 813) AUTHORS Aerts,A., Grimwood,J., Salamov,A., Schmutz,J., Tu,H., Shapiro,H., Pitluck,S., Lucas,S., Goodwin,S.B., Ben M'Barek,S., Dhillon,B., Wittenberg,A.H.J., Crane,C.F., Van der Lee,T.A.J., Antoniw,J., Bailey,A., Bluhm,B., Bowler,J., Canto-Canche,B., Churchill,A., Conde-Ferraez,L., Cools,H., Coutinho,P.M., Csukai,M., Dehal,P., De Wit,P., Donzelli,B., Foster,A.J., Hammond-Kosack,K., Hane,J., Henrissat,B., Kilian,A., Koopmann,E., Kourmpetis,Y., Kuzniar,A., Lindquist,E., Lombard,V., Maliepaard,C., Martins,N., Mehrabi,R., Oliver,R., Ponomarenko,A., Rudd,J., Schouten,H.J., Stergiopoulos,I., Torriani,S.F.F., de Vries,R.P., Wiebenga,A., Zwiers,L.-H., Kema,G.H.J. and Grigoriev,I.V. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (18-MAY-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_018198). ##Metadata-START## Organism Display Name :: Mycosphaerella graminicola IPO323 GOLD Stamp ID :: Gi00795 ##Metadata-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..813 /organism="Zymoseptoria tritici IPO323" /mol_type="mRNA" /strain="IPO323" /type_material="culture from epitype of Septoria tritici" /db_xref="taxon:336722" /chromosome="21" gene <1..>813 /locus_tag="MYCGRDRAFT_98091" /db_xref="GeneID:13396643" CDS 1..813 /locus_tag="MYCGRDRAFT_98091" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_003846856.1" /db_xref="GeneID:13396643" /db_xref="JGIDB:Mycgr3_98091" /translation="
MAELDDEELADMGCFALRPLDDVDEVDGFEYKEDDGLDDVDEVDGFGYEEDDGLDDVDEVDGFGYEEDDGLDDVDEVDGFEYEEDDGLDDVDEVDGFEYEEDDGLDDVDEVDGFEYEEDDGLDDVDEVDGFEYEEDDGFDDEEDDGFNNGFSDSGSDDMSDNKMQDRELSPELGRSSFDQDEHVDRTETISFAPAVSQSQPAAATLQKPRYDPVRRFLLELGVQSFHGFPVWRSCRRLDEETLSARQRDYVDVSLDVCERRISADVGEEW"
misc_feature <112..>381 /locus_tag="MYCGRDRAFT_98091" /note="RNA polymerase sigma factor; Provisional; Region: PRK05901" /db_xref="CDD:235640" ORIGIN
atggcagaactcgatgacgaggagctggctgacatgggatgctttgccttgcgtcccttggatgatgtcgatgaggtcgacggtttcgagtataaggaggacgatggcttggatgatgtcgatgaggtcgacggtttcgggtatgaggaggacgatggcttggatgatgtcgatgaggtcgacggtttcgggtatgaggaggacgatggcttggatgatgtcgatgaggtcgacggtttcgagtatgaggaggacgatggcttggatgatgtcgatgaggtcgacggtttcgagtatgaggaggacgatggcttggatgatgtcgatgaggtcgacggtttcgagtatgaggaggacgatggcttggatgatgtcgatgaggtcgatggtttcgagtatgaggaggacgatggcttcgatgatgaggaggacgacggcttcaacaacggcttttccgacagtggctctgacgacatgtccgacaataagatgcaggaccgcgagctgtctccagagctcggccgtagctcttttgatcaagatgagcatgttgatcgcaccgagaccatcagctttgctcctgcggtgtctcagtcgcagccggccgccgcaactctccaaaagccacgctacgacccagtacgcagattcttgctggagctgggcgtgcagagttttcatggttttccggtctggcgaagttgtcggcggctggacgaagagacgttgtcggcgaggcagcgagattatgtcgacgtcagtctcgatgtgtgcgagaggaggatttctgccgatgttggggaagaatggtga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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