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2024-03-29 14:29:18, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_003501391            3767 bp    mRNA    linear   ROD 10-JUL-2020
DEFINITION  PREDICTED: Cricetulus griseus NRDE-2, necessary for RNA
            interference, domain containing (Nrde2), transcript variant X1,
            mRNA.
ACCESSION   XM_003501391
VERSION     XM_003501391.4
DBLINK      BioProject: PRJNA72741
KEYWORDS    RefSeq.
SOURCE      Cricetulus griseus (Chinese hamster)
  ORGANISM  Cricetulus griseus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Cricetidae; Cricetinae; Cricetulus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_003613847.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 10, 2020 this sequence version replaced XM_003501391.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Cricetulus griseus Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3767
                     /organism="Cricetulus griseus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10029"
                     /chromosome="Unknown"
                     /cell_line="CHO-K1"
     gene            1..3767
                     /gene="Nrde2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 109 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:100770339"
     CDS             94..3582
                     /gene="Nrde2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2 isoform X1"
                     /protein_id="XP_003501439.1"
                     /db_xref="GeneID:100770339"
                     /translation="
MALFPAFAGLSEASGGGPSRKELDWLSNPSFCVGSLTALSQQAEEVTALASGGSPLTRSPLKSELSDDSDTSKTLTQISRRKKKEKKKRRKHQHRKKTKRRHERSSSSGSESDTDSGKDRSSRSTKDRQKEAEKPSQESNAVAAGHQSIWLEDIQTLTEVFRTDKKPDPANWEYKSLYRGDIARYKRKGNSCLGINPKKQCISWEGAPAAKKHSHKHLERYFTKKNVGLLHTEGIAVCASTEPLSSEPVTFIPVKDSADAATPVATWLNPLGIYDQSTTQWLQGQGPPEQESKQSDSQQDRESAALKARVEEFNRKVRENPRDTQLWMAFVAFQDEVMKSPGLYALEEGEQEKHRKSLKLLLEKKLAVLERAIESNPSSVDLKLAKLQLCAEFWEPSALAKEWQKLLFLHPNNTDLWQRYLSFCQSQFGTFSVSKLHSLYGKCLSTLSAVKDGSILSHPVLPGTEEAMFALFLQQCHFLRQAGHSEKVISLFQAMVDFTFFKPDSVKELPTKVQVEFFEPFWDSGEPRVGEKGARGWRAWMHQQERGGWVLVNPDEDEEEPEEDDQEIKDKTLPKWQIWLAVERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSPGLQFQLIEAFLQFLGVPSGFLPPASCLYLAMDESSIFDSELYDEKPLTYFNPSFSGISCVGYMEQLGCPRWTKGHSREGEEFVRNVFHLVLPLFSGKQKSQLCLSWLRYEVAKVIWCLHTKKKRLKSQGKNCKKLAKNLLKEPENRNNFCLWKQYAHLEWLLGNIEDARKVFDTALSLAGSSELKDRELCELSLLYAELEMELSPDSRGTSTGRAVHVLTRLTESSPYGPYTGQVMATQILKARKAYEHALQDCLGQTCASGPATAESLDCLGSLVRCFMLFQYLTIGIDAAVHIYGQVFAKLKGSVLPEGLGPKDSTSSQSLSSVLEAVTLMHTSLLRFHMNTSVYPLAPLRETLAEALKLYPGNQVLWRAYVQIQNKSHSANKTRRFLDGVTRSAKHLEPRLFAIEAEKMRKRLVESVQRVGGKEIHATIPETGLTHRIRALFENAIRSDKGSQCPLLWRMYLKFLVSLGNKERSKGVFYKALQSCPWAKVLYMDAMEYFPDELQEILDVMTEKELRVRLPLEELELLLED"
     misc_feature    574..861
                     /gene="Nrde2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(574..597,604..609,619..624,628..630,634..678,
                     685..693,697..705,727..735,745..750,754..759,766..786,
                     811..822,832..861)
                     /gene="Nrde2"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    1027..2025
                     /gene="Nrde2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
ORIGIN      
tttcccagagtgcatcgcgaggcagagtcgtccaaccagcgctctccaggcggcgccatttctgtggagggagtggcggtgcggcctgtgaacatggcgctgttcccggcctttgcgggcttaagtgaggcctccggtggtgggccatccaggaaagaattagactggctgagcaacccaagcttttgtgttggaagtctaacggctctgagccaacaagcggaagaggtcacagcccttgcttctggagggtcaccactgacaaggagtcctctgaagtcagagctctcagatgatagtgacactagcaagacactcacgcagataagcagaagaaagaagaaggagaaaaagaagagaaggaaacatcagcaccgcaagaagactaagagaaggcacgagcggtccagcagcagcggctctgagtcagacacagattccgggaaggacaggtcttccagaagcaccaaggacaggcagaaggaagccgagaaacccagtcaagaaagtaatgctgttgctgctggacaccaatccatttggctggaagacattcagactctgacggaagtcttcaggacagataagaagccagatcctgccaactgggagtataaatctctctaccgaggggatatagcaaggtacaagaggaaagggaactcctgcctgggcattaatcctaagaaacagtgtatatcctgggaaggagctcctgcggctaagaagcattcacacaagcacttggagcgctatttcaccaagaagaatgtgggattattgcacactgagggcattgccgtgtgtgctagcactgagcccctctcctctgagccagtcacatttatcccagtgaaggactctgctgatgcggctactcctgttgcaacgtggctgaatcctctggggatttacgatcagtcaactacacagtggttacaaggacagggtccaccagagcaagaatcaaagcagtcagactcacagcaggacagggagagtgctgctcttaaagccagggtggaggagttcaacagaaaggtgcgggagaatccccgggacactcagctgtggatggcctttgtagcgttccaggacgaggtcatgaagagtcctggcctgtatgcccttgaggaaggagagcaggagaagcacaggaagtccctgaaactcctcctggagaagaagctggccgtactagagcgcgccatcgagagcaacccgagcagtgtggacctgaagctcgccaagctgcagctgtgtgcagagttttgggagcccagtgcgctggccaaggagtggcagaagctcctctttctgcaccccaacaacacggacctgtggcagcgctacctctccttttgccagagtcagtttggcaccttttctgtgtccaaactccacagtctatacggcaagtgcttgagtaccttgtctgctgtcaaggacggtagcatcttatcccacccggtgctgccgggcacggaggaggccatgtttgcactttttcttcagcagtgtcactttctacggcaggctggccactcggagaaggtcatctctttgttccaggccatggttgacttcaccttcttcaagcctgacagtgtgaaagagctgcctaccaaagtacaggtggaattctttgaacccttctgggatagcggagagccccgtgttggggagaagggagcacgaggctggcgggcatggatgcaccagcaggagcgtgggggctgggtgcttgtcaacccagatgaggatgaagaggagccagaagaggatgaccaggagataaaagataagactctgcccaagtggcagatctggcttgctgttgagcgttctcgagaccagaggcactggcggccctggcgcccagataagaccaagaagcaaacagaggaagactgtgaggatccagagagacaggtgctatttgatgatattggacagtctctgatcagactttccagcccgggtcttcagttccagctcattgaggcctttctgcagttcttgggcgtgccttctggcttccttcctccagcctcctgtctttacctggccatggacgagagcagcatctttgacagtgagctctatgacgaaaagcccttaacttacttcaacccttccttttcggggattagctgtgttggctacatggagcagctgggctgtcctcgctggaccaaaggtcacagccgagagggcgaggagtttgtccgcaacgtcttccaccttgtgctgcctctgttctcgggcaagcagaagtctcagctctgcctctcctggttgcggtacgaggttgccaaggtcatttggtgtctacacactaaaaagaagcgattaaagtctcagggaaagaactgcaaaaaactagccaagaatctcctcaaagagccagaaaaccgcaacaacttttgcctctggaagcagtatgcacacctggagtggttgcttggcaacatagaggatgccagaaaagtgtttgacacagcactcagcctggcaggcagcagtgagctgaaggaccgtgaactctgtgaactcagtctgctttatgccgagctggagatggaactgtcgcctgactcgagaggtacctccacaggccgagctgtccatgtgttaactcgactgactgagagcagtccctatggtccctacactgggcaggtcatggccactcagattctgaaggctcgaaaggcttatgaacatgcgctgcaggactgtctgggacagacctgtgcctctggcccagctactgcagagtccttggactgcctggggagcttggtcagatgcttcatgcttttccagtatttgactatagggatcgatgctgctgtgcacatatatggacaggtgttcgccaagctgaagggctctgttctcccagaaggccttgggcccaaggacagcaccagctcccagagtttgagcagtgttctcgaagctgtcaccctgatgcatacaagtctgctgcgattccacatgaacactagtgtgtaccctctggctcccctccgagagacgcttgcagaggcactaaagctatatccaggcaatcaggttctctggagggcatatgtacagattcagaataagtcccacagtgctaacaagaccaggaggttcttggacggagtcaccaggtctgccaaacacctggagcctcggctgtttgcaatcgaagctgagaagatgaggaaaaggctagtggaatctgtccagagggtaggtggtaaagagatccacgccaccattccggagacaggcctcacacatcggatcagggccttgtttgaaaatgcaattcggagcgacaagggcagccagtgtcccctgctgtggaggatgtatttgaagtttttggtttccttaggaaacaaggagagaagcaaaggtgtgttctacaaggcgctccagagctgtccttgggcaaaggtgctgtacatggatgccatggagtacttcccagacgagctgcaagagatcctggatgtgatgactgagaaggagcttcgtgtacgcctgcccctagaggagctggaactactgctggaggactagagtaagaccaggtgctgtgctggtctgcagaacagtgaggacaagggggctcaggagagctgcagccgtgcaagggctttctccactgtctgggtggggtttggacttactgttttacatattatatatgtgaccaactttatgtacagatggagtcatgccagtgataaaccttttatggttga
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]