2024-03-29 14:29:18, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_003501391 3767 bp mRNA linear ROD 10-JUL-2020 DEFINITION PREDICTED: Cricetulus griseus NRDE-2, necessary for RNA interference, domain containing (Nrde2), transcript variant X1, mRNA. ACCESSION XM_003501391 VERSION XM_003501391.4 DBLINK BioProject: PRJNA72741 KEYWORDS RefSeq. SOURCE Cricetulus griseus (Chinese hamster) ORGANISM Cricetulus griseus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613847.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XM_003501391.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3767 /organism="Cricetulus griseus" /mol_type="mRNA" /db_xref="taxon:10029" /chromosome="Unknown" /cell_line="CHO-K1" gene 1..3767 /gene="Nrde2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 109 samples with support for all annotated introns" /db_xref="GeneID:100770339" CDS 94..3582 /gene="Nrde2" /codon_start=1 /product="nuclear exosome regulator NRDE2 isoform X1" /protein_id="XP_003501439.1" /db_xref="GeneID:100770339" /translation="
MALFPAFAGLSEASGGGPSRKELDWLSNPSFCVGSLTALSQQAEEVTALASGGSPLTRSPLKSELSDDSDTSKTLTQISRRKKKEKKKRRKHQHRKKTKRRHERSSSSGSESDTDSGKDRSSRSTKDRQKEAEKPSQESNAVAAGHQSIWLEDIQTLTEVFRTDKKPDPANWEYKSLYRGDIARYKRKGNSCLGINPKKQCISWEGAPAAKKHSHKHLERYFTKKNVGLLHTEGIAVCASTEPLSSEPVTFIPVKDSADAATPVATWLNPLGIYDQSTTQWLQGQGPPEQESKQSDSQQDRESAALKARVEEFNRKVRENPRDTQLWMAFVAFQDEVMKSPGLYALEEGEQEKHRKSLKLLLEKKLAVLERAIESNPSSVDLKLAKLQLCAEFWEPSALAKEWQKLLFLHPNNTDLWQRYLSFCQSQFGTFSVSKLHSLYGKCLSTLSAVKDGSILSHPVLPGTEEAMFALFLQQCHFLRQAGHSEKVISLFQAMVDFTFFKPDSVKELPTKVQVEFFEPFWDSGEPRVGEKGARGWRAWMHQQERGGWVLVNPDEDEEEPEEDDQEIKDKTLPKWQIWLAVERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSPGLQFQLIEAFLQFLGVPSGFLPPASCLYLAMDESSIFDSELYDEKPLTYFNPSFSGISCVGYMEQLGCPRWTKGHSREGEEFVRNVFHLVLPLFSGKQKSQLCLSWLRYEVAKVIWCLHTKKKRLKSQGKNCKKLAKNLLKEPENRNNFCLWKQYAHLEWLLGNIEDARKVFDTALSLAGSSELKDRELCELSLLYAELEMELSPDSRGTSTGRAVHVLTRLTESSPYGPYTGQVMATQILKARKAYEHALQDCLGQTCASGPATAESLDCLGSLVRCFMLFQYLTIGIDAAVHIYGQVFAKLKGSVLPEGLGPKDSTSSQSLSSVLEAVTLMHTSLLRFHMNTSVYPLAPLRETLAEALKLYPGNQVLWRAYVQIQNKSHSANKTRRFLDGVTRSAKHLEPRLFAIEAEKMRKRLVESVQRVGGKEIHATIPETGLTHRIRALFENAIRSDKGSQCPLLWRMYLKFLVSLGNKERSKGVFYKALQSCPWAKVLYMDAMEYFPDELQEILDVMTEKELRVRLPLEELELLLED"
misc_feature 574..861 /gene="Nrde2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(574..597,604..609,619..624,628..630,634..678, 685..693,697..705,727..735,745..750,754..759,766..786, 811..822,832..861) /gene="Nrde2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1027..2025 /gene="Nrde2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
tttcccagagtgcatcgcgaggcagagtcgtccaaccagcgctctccaggcggcgccatttctgtggagggagtggcggtgcggcctgtgaacatggcgctgttcccggcctttgcgggcttaagtgaggcctccggtggtgggccatccaggaaagaattagactggctgagcaacccaagcttttgtgttggaagtctaacggctctgagccaacaagcggaagaggtcacagcccttgcttctggagggtcaccactgacaaggagtcctctgaagtcagagctctcagatgatagtgacactagcaagacactcacgcagataagcagaagaaagaagaaggagaaaaagaagagaaggaaacatcagcaccgcaagaagactaagagaaggcacgagcggtccagcagcagcggctctgagtcagacacagattccgggaaggacaggtcttccagaagcaccaaggacaggcagaaggaagccgagaaacccagtcaagaaagtaatgctgttgctgctggacaccaatccatttggctggaagacattcagactctgacggaagtcttcaggacagataagaagccagatcctgccaactgggagtataaatctctctaccgaggggatatagcaaggtacaagaggaaagggaactcctgcctgggcattaatcctaagaaacagtgtatatcctgggaaggagctcctgcggctaagaagcattcacacaagcacttggagcgctatttcaccaagaagaatgtgggattattgcacactgagggcattgccgtgtgtgctagcactgagcccctctcctctgagccagtcacatttatcccagtgaaggactctgctgatgcggctactcctgttgcaacgtggctgaatcctctggggatttacgatcagtcaactacacagtggttacaaggacagggtccaccagagcaagaatcaaagcagtcagactcacagcaggacagggagagtgctgctcttaaagccagggtggaggagttcaacagaaaggtgcgggagaatccccgggacactcagctgtggatggcctttgtagcgttccaggacgaggtcatgaagagtcctggcctgtatgcccttgaggaaggagagcaggagaagcacaggaagtccctgaaactcctcctggagaagaagctggccgtactagagcgcgccatcgagagcaacccgagcagtgtggacctgaagctcgccaagctgcagctgtgtgcagagttttgggagcccagtgcgctggccaaggagtggcagaagctcctctttctgcaccccaacaacacggacctgtggcagcgctacctctccttttgccagagtcagtttggcaccttttctgtgtccaaactccacagtctatacggcaagtgcttgagtaccttgtctgctgtcaaggacggtagcatcttatcccacccggtgctgccgggcacggaggaggccatgtttgcactttttcttcagcagtgtcactttctacggcaggctggccactcggagaaggtcatctctttgttccaggccatggttgacttcaccttcttcaagcctgacagtgtgaaagagctgcctaccaaagtacaggtggaattctttgaacccttctgggatagcggagagccccgtgttggggagaagggagcacgaggctggcgggcatggatgcaccagcaggagcgtgggggctgggtgcttgtcaacccagatgaggatgaagaggagccagaagaggatgaccaggagataaaagataagactctgcccaagtggcagatctggcttgctgttgagcgttctcgagaccagaggcactggcggccctggcgcccagataagaccaagaagcaaacagaggaagactgtgaggatccagagagacaggtgctatttgatgatattggacagtctctgatcagactttccagcccgggtcttcagttccagctcattgaggcctttctgcagttcttgggcgtgccttctggcttccttcctccagcctcctgtctttacctggccatggacgagagcagcatctttgacagtgagctctatgacgaaaagcccttaacttacttcaacccttccttttcggggattagctgtgttggctacatggagcagctgggctgtcctcgctggaccaaaggtcacagccgagagggcgaggagtttgtccgcaacgtcttccaccttgtgctgcctctgttctcgggcaagcagaagtctcagctctgcctctcctggttgcggtacgaggttgccaaggtcatttggtgtctacacactaaaaagaagcgattaaagtctcagggaaagaactgcaaaaaactagccaagaatctcctcaaagagccagaaaaccgcaacaacttttgcctctggaagcagtatgcacacctggagtggttgcttggcaacatagaggatgccagaaaagtgtttgacacagcactcagcctggcaggcagcagtgagctgaaggaccgtgaactctgtgaactcagtctgctttatgccgagctggagatggaactgtcgcctgactcgagaggtacctccacaggccgagctgtccatgtgttaactcgactgactgagagcagtccctatggtccctacactgggcaggtcatggccactcagattctgaaggctcgaaaggcttatgaacatgcgctgcaggactgtctgggacagacctgtgcctctggcccagctactgcagagtccttggactgcctggggagcttggtcagatgcttcatgcttttccagtatttgactatagggatcgatgctgctgtgcacatatatggacaggtgttcgccaagctgaagggctctgttctcccagaaggccttgggcccaaggacagcaccagctcccagagtttgagcagtgttctcgaagctgtcaccctgatgcatacaagtctgctgcgattccacatgaacactagtgtgtaccctctggctcccctccgagagacgcttgcagaggcactaaagctatatccaggcaatcaggttctctggagggcatatgtacagattcagaataagtcccacagtgctaacaagaccaggaggttcttggacggagtcaccaggtctgccaaacacctggagcctcggctgtttgcaatcgaagctgagaagatgaggaaaaggctagtggaatctgtccagagggtaggtggtaaagagatccacgccaccattccggagacaggcctcacacatcggatcagggccttgtttgaaaatgcaattcggagcgacaagggcagccagtgtcccctgctgtggaggatgtatttgaagtttttggtttccttaggaaacaaggagagaagcaaaggtgtgttctacaaggcgctccagagctgtccttgggcaaaggtgctgtacatggatgccatggagtacttcccagacgagctgcaagagatcctggatgtgatgactgagaaggagcttcgtgtacgcctgcccctagaggagctggaactactgctggaggactagagtaagaccaggtgctgtgctggtctgcagaacagtgaggacaagggggctcaggagagctgcagccgtgcaagggctttctccactgtctgggtggggtttggacttactgttttacatattatatatgtgaccaactttatgtacagatggagtcatgccagtgataaaccttttatggttga
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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