2021-01-20 06:27:59, GGRNA.v2 : RefSeq release 203 (Nov, 2020)
LOCUS XM_003103769 2709 bp mRNA linear INV 13-OCT-2010 DEFINITION Caenorhabditis remanei hypothetical protein (CRE_09584) mRNA, complete cds. ACCESSION XM_003103769 VERSION XM_003103769.1 KEYWORDS RefSeq. SOURCE Caenorhabditis remanei ORGANISM Caenorhabditis remanei Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 2709) AUTHORS Wilson,R.K. CONSRTM The Caenorhabditis remanei Sequencing Consortium TITLE PCAP assembly of the Caenorhabditis remanei genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 2709) AUTHORS Wilson,R.K. CONSRTM The Caenorhabditis remanei Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (17-JUL-2007) Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_003319658). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2709 /organism="Caenorhabditis remanei" /mol_type="mRNA" /strain="PB4641" /db_xref="taxon:31234" gene <1..>2709 /locus_tag="CRE_09584" /db_xref="GeneID:9802270" /db_xref="WormBase:WBGene00059681" CDS 1..2709 /locus_tag="CRE_09584" /note="contains similarity to Pfam domains PF02170 (PAZ domain), PF08699 (Domain of unknown function (DUF1785)), PF02171 (Piwi domain); contains similarity to Interpro domains IPR014811 (Region of unknown function DUF1785), IPR003165 (Stem cell self-renewal protein Piwi), IPR003100 (Argonaute and Dicer protein, PAZ)" /codon_start=1 /product="hypothetical protein" /protein_id="XP_003103817.1" /db_xref="InterPro:IPR003100" /db_xref="InterPro:IPR003165" /db_xref="InterPro:IPR014811" /db_xref="PFAM:PF02170" /db_xref="PFAM:PF02171" /db_xref="PFAM:PF08699" /db_xref="WormBase:CRE09584" /db_xref="GeneID:9802270" /db_xref="WormBase:WBGene00059681" /translation="
METEIELASDPTIQLLSAMTSMRVDSGGAPGPPPASATSSLARSGVQFSCPRRPNHGVEGRAILLRANHFSVRIPGGTIQHYNVDVMPDKCPRRVNREIIGCLISSFTRYFTNVRPVYDGKNSMYTRDLLPFGRDRMDFDVTLPGESAVERQFQVSLKWAGEISLTSLEDAMEGRINQVPYETVKAVDVILRHLPSLKYSPVGRSFFSPPAGYETGQSYPESKLGGGREVWFGFHQSIRPSQWKMMLNIDVSATAFYRAMPVIEFLAEVLELPIQALAERRVLSDSQRVKFTKEIRGLKIEINHCGTMRRKYRVCNVTRRPAQTQTFPLTLENGSSIEKTVLKYFQDKYGLTLKYPHLPCLQVGQEAKHTYLPIEVCCVVSGQRCIKKLTDSQTSTMIKATARTAPERERDIANLVRKAEFSADPFAHEFGITINPAMTEVKGRVLMAPKLLYGGRQNSTAVPNQGVWDLRGKQFHTGIEVRVWAIVCFADQNHVKENDLRAFTQHLQRISHDAGMPIIGNPCFCKYAVGVEQVEPMFKYLKQNYPELQLVVIVLPGKTPVYDKKCERTCGNTDRILVLKSKQRVWISGHTYIYTLKSNVLETPSSESPLNVSRPKNVTRTTPQTLSNICMKMNMKLGGVNCVLYPNVRPKIFSESVIFLGCDITHPPAGDSRKPSVAAVVGSMDAHTVEVRGDCESSAKSTGNYPRRCRRMVSPEGQFFNVLQYELRAIREACMMLETGYQPGITFIAVQKRHHTRLFSVDKNDRVGKAFNIPPGTIVDVGITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNDMSADQLQQLTYQMCHTYARCTRSVSIPAPAYYAHLVAMRARFHLVDRDHESGEGSQPSGTSDDSTFSSMARAVQVHPKANKVMYFA"
misc_feature 73..2559 /locus_tag="CRE_09584" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 157..573 /locus_tag="CRE_09584" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 604..774 /locus_tag="CRE_09584" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 775..1140 /locus_tag="CRE_09584" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(934..936,979..981,1021..1023,1033..1035,1087..1089, 1108..1110,1114..1116) /locus_tag="CRE_09584" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1273..2580 /locus_tag="CRE_09584" /note="Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1684..1686,1786..1788,1834..1842,1849..1851, 1873..1875,1882..1884,1894..1896,1906..1908) /locus_tag="CRE_09584" /note="5' RNA guide strand anchoring site; other site" /db_xref="CDD:240015" misc_feature order(1987..1989,1993..1995,2131..2133,2548..2550) /locus_tag="CRE_09584" /note="active site" /db_xref="CDD:240015" ORIGIN
atggagactgagatagagctcgcctccgacccgaccatccaattgctctccgccatgacatcaatgcgtgtggacagtggtggagcaccaggaccaccaccagcttctgccacttcttccctcgctcgctcgggagtccaattcagttgcccacgtcgtccgaatcatggagtcgaaggacgtgccatcctccttcgtgccaaccacttctccgtccggattccaggcggtaccatccagcactacaatgtcgatgtgatgcctgataagtgtccgcgacgtgtcaatcgcgaaatcatcggatgcctcatctcatccttcactcgctacttcaccaacgtccgccctgtgtacgatgggaagaacagtatgtacacccgcgatcttctaccattcggaagagatcgtatggatttcgacgtgacgctcccaggagaatcagcggtggaacgtcaattccaagtctccctaaaatgggctggagagatctcgttgacaagtttggaagacgcgatggagggacgtatcaaccaggttccatacgagactgtcaaagcggttgatgtgattttgagacacttgccgtcactcaagtactcaccggttggaagatccttcttctcgccaccagctggatatgaaactggacaaagttatccggagagcaagctcggcggaggacgtgaagtatggtttggattccatcaatcgattcgtccatctcaatggaaaatgatgttgaatatcgatgtctctgccaccgcattctatcgtgccatgccagtcattgaattcctcgccgaagtcctggagcttccgattcaagctcttgccgagcgtcgtgtgctctctgactctcaacgagtcaagtttacaaaagagatccggggtctcaagattgagataaatcactgtggaacgatgcgacgaaagtatcgagtgtgcaatgtgacgagacgtccagctcagacgcagacgttcccgttgacactggagaatgggtcgtcgattgagaagactgtgttgaagtacttccaggataagtatggattgacattgaagtatccacacttgccatgtcttcaggttggtcaagaggcaaagcacacgtatctccccatcgaagtctgctgcgttgtctccggtcaacgttgcatcaagaagctcaccgactcccagacgtccacaatgatcaaggcgaccgcccgtaccgctccagaacgtgagcgtgacattgcgaatctcgtccgtaaagccgagttctctgccgacccattcgctcatgaatttggaataaccatcaatccagcgatgactgaagtcaaggggcgtgtcctcatggcaccgaaactcttgtacggaggtcgacagaactcgacagccgtgccgaatcaaggagtttgggatctgagaggaaaacagttccacactggaatagaagttcgcgtatgggcgatcgtctgcttcgccgatcagaatcatgtgaaggagaacgatttgagagcattcactcaacacctccaacgtatttctcatgacgctggaatgccaattatcgggaacccgtgcttctgcaaatatgctgtcggcgtggaacaagtcgagccgatgttcaagtatttgaagcagaactatccagagcttcagttggtcgtcattgttcttccaggaaagacgcctgtttatgacaaaaaatgcgaacggacatgtggaaatacagacagaattctagttttaaagagcaagcagagagtctggatatctggacacacatacatttacacactgaaatcaaacgtgttggagacaccgtcctcggaatcgccactcaatgtatccaggcccaaaaacgtgacccgcacaacgccacagacgctctcgaacatttgcatgaagatgaacatgaaactgggcggagtcaactgtgtcctctaccccaacgtccgcccgaagatattcagcgagtcggtcatcttcctcggctgtgacatcactcatccaccagccggtgactcacgaaaaccatcggtcgccgcagtggtcggatccatggatgctcataccgtcgaagtacgcggcgactgtgagagttcagccaaatcgacaggaaattatcctcggagatgtcggcgaatggtgtctccggagggacagtttttcaacgtcctacagtatgagcttcgtgcgattcgagaggcctgcatgatgctggaaaccggatatcaacctggaatcaccttcatcgctgtgcagaagagacatcacacccggttgttctctgtggataagaatgatcgagtgggaaaggcgttcaatattccgcctggaacaattgtcgatgttggaatcacccacccgaccgaattcgacttctacctttgttcacacgctggaatccaaggaacatcccgcccgtctcactatcatgtgctttgggatgataacgatatgtcggcagatcagttgcaacagttgacttatcaaatgtgccatacctatgctcggtgcacacggtcggtgtcgataccggcgccagcgtactacgcgcacttggtggcgatgcgcgcgagattccacttggtggatagggaccacgagtcgggagaggggtcgcaaccatcgggaacttcggatgactcgacattctcgagcatggctagagctgttcaggtccacccgaaggcaaacaaagtgatgtactttgcttag
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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