2024-04-25 17:10:57, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_002936732 7902 bp mRNA linear VRT 18-DEC-2019 DEFINITION PREDICTED: Xenopus tropicalis ATPase, Cu++ transporting, beta polypeptide (atp7b), mRNA. ACCESSION XM_002936732 VERSION XM_002936732.5 DBLINK BioProject: PRJNA205740 KEYWORDS RefSeq. SOURCE Xenopus tropicalis (tropical clawed frog) ORGANISM Xenopus tropicalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030678.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2019 this sequence version replaced XM_002936732.4. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Xenopus tropicalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7902 /organism="Xenopus tropicalis" /mol_type="mRNA" /strain="Nigerian" /db_xref="taxon:8364" /chromosome="2" /sex="female" /tissue_type="liver and blood" /dev_stage="adult" /note="F17 inbred" gene 1..7902 /gene="atp7b" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns" /db_xref="GeneID:100497797" /db_xref="Xenbase:XB-GENE-6044681" CDS 394..4797 /gene="atp7b" /codon_start=1 /product="copper-transporting ATPase 2" /protein_id="XP_002936778.3" /db_xref="GeneID:100497797" /db_xref="Xenbase:XB-GENE-6044681" /translation="
MFPKRILDEEEGVQLLSTENEKCSTKRRSSPQFCVNNTFSDSPVSVWKEAKKPSCAFDNRGYEGSPDDLCSLPDDVGSVVVAIQGMTCQSCVQSIEGRISKVSGVVGINVCLEQNNAIVNYLQTEITPHKICEEIEDMGFDASLSEQSGMPSSVKSSYYGDNVIKIRVEGMTCQSCVNTIEGKIGKIQGVQKIKVSLTGQEAVITYQSHIIQAEDLRKYIEDMGFEASIKNKPDPTKLGTIDIERLQNSIAENHSGHTNSNTVTLGIDGMRCKSCVHNIEGYVSGLAGIQSIRVSLKNKNAVVCLSQGSTSLLSLKESIENLPPGKFKVTLPVGVEKGQSLARNSTHSSHRDQSMGGNMAIISIGGMTCQSCVSSIENMISQRKGVLHILVSLDEGNGNIFYNPCETNAEELRAAIEDMGFHSTLVSDNSPSISCSEYNSKEEENKQTPPKATRQISGSRDYILDVLPKKSHPDFANEKYDTAPEKCFLQITGMTCASCVSNIERNLKKKDGIVSVLVALMSGKAEVKFYPDRIEPLEIAQLVEDLGFGASVMEDYTASDGNVELIITGMTCASCVHNIESRLMRTPGILQASVALATCKAQVKFDPEIVGPRDIIRIIEGIGFQASLAKRDPTAHKLDHKEEIKQWRNSFLFSLLFGIPVIILMIYMLAANKDHHNTMVLDRNIVPGLSIINLVFFILCTFVQTLGGRYFYVQAYKSLKHKATNMDVLIVLATTIAYIYSVVILTVAMVEKADKSPETFFDTPPMLFMFIALGRWLEHIAKSKTSEALAKLISLQATEAAVVTFGANQIILREEQVAVELVQRGDIVKVVPGGKFPVDGKVIEGTSMADESLITGEPMPVRKKPGSMVIAGSINAHGTVLVEATHVGSETTLAQIVKLVEEAQMSKAPIQQLADKISGYFVPFIIIISVVTLVTWIIIGFVNFDIIIKYFPSYSKNISKTEVIIRVAFQTSITVLSIACPCALGLATPTAVMVGTGVAAQNGILIKGGEPLEMAHKIKAVMFDKTGTITHGVPKVMRVLLLGDVVKMPLKRMLAVVGTAEASSEHPLGMAVTKYCKEELGTELLGYCTDFQAVPGCGISCKVNNIESVLVQNEEGLNEQNSYRNSLIGTTDSSLIITPELLGAQAPLAHTVLIGNREWMRRNGLHISTDVDEAMSSHEMKGQTAVLVAIDGELCGMIAIADTVKQEAALAVHTLKSMGIDVVLITGDNRKTAKAIATQVGIKKVFAEVLPSHKVAKVQALQSDNKRVAMVGDGVNDSPALARADVGIAIGTGTDVAIEAADIVLIRNDLLDVVASIHLSKRTVRRIRLNFVFALIYNLLGIPIAAGVFMPAGLVLQPWMGSAAMAASSVSVVLSSLQLKCYRKPDSDRYEARAQGHMKPLTPSQISVHIGMDDRWRDLPKTKAWDQISYISQVSRASQKPKRHGSLVEQQDKWSLLINETHEDQMI"
misc_feature 631..822 /gene="atp7b" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(649..657,664..666) /gene="atp7b" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 886..1077 /gene="atp7b" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(904..912,919..921) /gene="atp7b" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1183..1359 /gene="atp7b" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1201..1209,1216..1218) /gene="atp7b" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1477..1665 /gene="atp7b" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1492..1500,1507..1509) /gene="atp7b" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1858..2046 /gene="atp7b" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1873..1881,1888..1890) /gene="atp7b" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 2083..2274 /gene="atp7b" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(2101..2109,2116..2118) /gene="atp7b" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 2338..4473 /gene="atp7b" /note="P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B; Region: P-type_ATPase_Cu-like; cd02094" /db_xref="CDD:319783" misc_feature order(3331..3333,3337..3339,4402..4404) /gene="atp7b" /note="putative Cu binding site [ion binding]; other site" /db_xref="CDD:319783" misc_feature order(3463..3471,3673..3675,3853..3861,3949..3951, 4069..4077,4135..4137,4144..4146,4153..4155,4210..4212, 4219..4221) /gene="atp7b" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:319783" ORIGIN
tgcagaagtgcgcagcgcggcataaacagcgttcatgtcatataacctggctgtagcgtctagtatgggtttcacgtttatctgtaacttccaaaatgaaagttttaattaaaagttgttattggtggaagtggaacacgtgggtaaatgcattcaaatgcaaatacatgagtattccctgagtgacagtggttgggcgggttgcgcttgttttatttccccagcaacctggcgagtatcataaaggtcacgttggctgctgctgcttcctattgatcaaccggtttgtgggtccatagttcaaccccagagtaatgcacacatattctctcacatacagtcctgctgtgcggggaggcagagggacacagccaaacacctagggaaagaaagatgtttcctaaaaggattttagatgaagaggagggagtacagttgttaagcacagagaatgaaaaatgttcaaccaaaagaagatcctcaccacaattttgtgtgaacaataccttttccgactctccggtatctgtctggaaagaagcaaagaaacctagttgtgcttttgataacaggggctatgagggaagcccagacgacctctgctctttgcctgatgatgttggctcagtagtggtggcaattcaaggcatgacttgccagtcatgtgtgcagtccatcgaaggaagaatatctaaagtttcaggtgtagtaggcataaatgtatgcttggaacagaataatgccattgtcaactatttacagacagagataacgccacataaaatttgtgaagaaattgaagacatgggttttgatgcaagtttatcagaacagagtgggatgccgtcatctgtaaaatcctcatactatggtgacaatgtaataaaaattagggtagaaggcatgacgtgccagtcttgtgtcaacaccatagaaggcaaaataggcaaaattcagggtgtgcagaaaatcaaagtgtcgcttaccggtcaagaagcagtcatcacatatcagtcacacattattcaagcagaagacctgaggaaatacatagaagacatgggatttgaagcttcaattaaaaacaaaccagatccaacaaagcttgggacaattgacattgaacgcttgcagaacagcattgcagaaaaccattcaggtcatacaaacagcaacactgtgactctagggatagatggcatgcgctgtaaatcctgtgtgcacaacattgaaggatatgtatctggccttgccggtattcagagcatcagagtctccctcaagaacaaaaatgctgttgtgtgtctttcccaaggttctacctcactcttatccctaaaagaaagcatagaaaatctgcctccagggaaatttaaagtaacacttccagtgggagtagaaaagggccaatcattagcaaggaacagtacccattcttctcatagagaccagagtatgggtggaaatatggcaataatcagtattggggggatgacctgtcaatcttgtgtatcatcaattgaaaacatgatctcacaaagaaagggtgtactgcatatattggtgtctttagatgaggggaatgggaacattttctacaatccatgtgaaacaaacgcagaggagttacgagcagccatagaagatatgggatttcactccactcttgtgtctgataactcaccttctatcagctgtagtgagtataactccaaggaagaggaaaacaagcaaacccccccaaaggctacaaggcaaatcagtggcagtcgagattacatactggatgtgctgcccaagaaatctcacccggactttgctaatgagaaatatgacactgctcctgagaaatgtttcttgcagatcacaggaatgacgtgcgcatcgtgtgtttctaacattgagaggaacctgaaaaagaaagatggaattgtgtccgtgcttgtagcactgatgtctggtaaggcagaggtcaagttctacccagacagaattgagccactggaaatagcacaacttgttgaagacctgggatttggggcatcagtaatggaagattacacagccagcgatggcaacgtggagttaattattacaggaatgacatgcgcttcttgtgttcacaacattgagtccaggctaatgagaacccctggcattttgcaagcatcagtcgctctagctacgtgcaaagcccaggtcaagtttgatccagagattgttggtccacgagatataattagaattattgagggaattggctttcaagcatctttggccaaaagagatccaacagctcataaacttgaccacaaggaggaaataaagcagtggagaaattccttccttttcagtcttctatttgggatccctgttataattctcatgatttacatgttggctgctaacaaagatcatcacaacacaatggtgcttgacagaaatattgttcctggtttatcaataataaatcttgtcttcttcattctctgtaccttcgttcagacccttggaggcaggtatttttatgttcaagcctataaatctctgaagcacaaggcaactaatatggatgtgctgattgtcctggccaccacaattgcctacatttactctgtggtcattctgacagtggccatggtggagaaggccgacaaaagccctgagactttctttgatacccctcccatgctgttcatgtttattgccctgggaagatggctggagcatattgcaaagagtaaaacctccgaagctctcgccaagctgatatccttacaagctacagaggccgcagttgttacatttggtgcaaatcaaataattctaagagaggagcaggtagctgtagaattagttcaaagaggagatatcgtcaaggttgtccctgggggtaaattccctgttgatggaaaggttatagaaggaacctcaatggcagatgaatctctcattacaggtgagccgatgcccgtaaggaagaagcctggcagcatggttattgctggttccatcaacgcacatggcacagttcttgttgaagctacacatgttggatctgaaactactttggcacagattgtcaaacttgtggaggaagctcaaatgtccaaggcacctatccagcagctggcagataaaataagtggatactttgttccctttatcatcattatttctgttgtgactttggtgacttggataattattggctttgtaaattttgacatcataattaaatattttccgagttacagtaaaaatatttctaagacagaggttataatacgtgtggcatttcagacctccatcacggtgctgagcatcgcctgtccctgtgctttgggcctggcaacacccacagcagtaatggttggtacaggagtggcagctcagaatggcatccttattaaaggcggtgaaccactagagatggctcacaagataaaggcagtgatgtttgacaagaccggcaccataacacatggggtacctaaagtcatgcgagtgctgctgctaggcgacgtggtgaagatgcctctgaaaaggatgcttgctgtggtggggacggcggaagccagcagcgaacatcctctgggaatggcagtcacaaaatactgcaaggaggaacttggtacagaattgttaggatattgtacagatttccaggctgtccctggatgtggcatcagctgtaaagtgaataatatagagagtgttctagtgcagaatgaagaaggactaaatgaacagaattcttacagaaattctctcatcggaaccacagacagctctttgattatcactcctgaattattaggtgcccaagccccactagcccacactgttttaattggcaatcgagaatggatgagacgcaatgggctacacatctctactgatgttgatgaggccatgtccagccatgagatgaaaggacaaacagcagtactagtggcaatagatggtgagctgtgcgggatgattgccattgcagacacagtgaaacaggaggcagctctcgctgtacataccctgaaaagtatgggaatagacgtggttctaattacaggcgacaacagaaaaacagcgaaagctatcgctacccaggttggcatcaaaaaagtttttgcagaagttcttccctcccataaagttgccaaggttcaagctctccagagtgataacaagagggtggccatggtaggagatggagtgaatgactcgcccgcgcttgccagagctgatgtcggcattgctattggcactgggacggatgtggccattgaagctgctgatatagttcttatcaggaatgatttattagatgtggttgccagtatccacctctcaaagaggacagtgagacgaatacgactcaactttgtatttgctttgatatataatcttcttggcatacctattgctgcaggtgtgttcatgccagcgggacttgtgttacaaccttggatgggctccgctgcaatggcagcttcctctgtctctgtggttctgtcctcattgcagttaaaatgctaccggaaaccagactctgacaggtacgaagctcgtgcacagggacacatgaagccactcaccccatcacagattagtgttcacattgggatggatgaccggtggagggatctgccaaagacaaaagcctgggatcagatcagctacatcagccaagtgtccagagcatctcagaagccgaaacggcacggctctcttgtagagcaacaagacaagtggtcgctacttatcaatgaaacacatgaggaccagatgatctaaatccctgtgtaaagggaagtggcatcatattatgaaactgatcactctgaatctgccttgtgtgccatctggggttggattacccttgctttctgtctagtagtgaatagggaacagttgtgtatttttcattctatttacactgtagtggctttaaaggaagctttttaaaagcatataatagtgggtaaggaacagacaag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@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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