2024-04-19 08:14:00, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_002902419 396 bp mRNA linear PLN 22-JUL-2010 DEFINITION Phytophthora infestans T30-4 secreted RxLR effector peptide protein, putative (PITG_09915) mRNA, complete cds. ACCESSION XM_002902419 VERSION XM_002902419.1 KEYWORDS RefSeq. SOURCE Phytophthora infestans T30-4 ORGANISM Phytophthora infestans T30-4 Eukaryota; Sar; Stramenopiles; Oomycota; Peronosporales; Peronosporaceae; Phytophthora. REFERENCE 1 (bases 1 to 396) AUTHORS Nusbaum,C., Haas,B., Kamoun,S., Fry,W., Judelson,H., Ristaino,J., Govers,F., Whisson,S., Birch,P., Birren,B., Lander,E., Galagan,J., Zody,M., Devon,K., O'Neil,K., Zembek,L., Anderson,S., Jaffe,D., Butler,J., Alvarez,P., Gnerre,S., Grabherr,M., Mauceli,E., Brockman,W., Young,S., LaButti,K., Sykes,S., DeCaprio,D., Crawford,M., Koehrsen,M., Engels,R., Montgomery,P., Pearson,M., Howarth,C., Larson,L., White,J., O'Leary,S., Kodira,C., Zeng,Q., Yandava,C. and Alvarado,L. CONSRTM The Broad Institute Genome Sequencing Platform TITLE Annotation of Phytophthora infestans T30-4 JOURNAL Unpublished REFERENCE 2 (bases 1 to 396) AUTHORS Nusbaum,C., Kamoun,S., Fry,W., Judelson,H., Ristaino,J., Govers,F., Whisson,S., Birch,P., Birren,B., Lander,E., Galagan,J., Zody,M., Devon,K., O'Neil,K., Zembek,L., Anderson,S., Jaffe,D., Butler,J., Alvarez,P., Gnerre,S., Grabherr,M., Mauceli,E., Brockman,W., Young,S., LaButti,K., Sykes,S., DeCaprio,D., Crawford,M., Koehrsen,M., Engels,R., Montgomery,P., Pearson,M., Howarth,C., Larson,L., White,J., O'Leary,S., Kodira,C., Zeng,Q., Yandava,C. and Alvarado,L. CONSRTM The Broad Institute Genome Sequencing Platform TITLE Direct Submission JOURNAL Submitted (23-OCT-2006) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_003303742). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..396 /organism="Phytophthora infestans T30-4" /mol_type="mRNA" /strain="T30-4" /db_xref="taxon:403677" gene <1..>396 /locus_tag="PITG_09915" /db_xref="GeneID:9474690" CDS 1..396 /locus_tag="PITG_09915" /codon_start=1 /product="secreted RxLR effector peptide protein, putative" /protein_id="XP_002902465.1" /db_xref="GeneID:9474690" /translation="
MRISFMLSVAMATLYFAICNATGDFNPITLSAMGSPELVHTLDEVRSDAGTPKRYLRVHGKDGETGAEERGLGELMAKIKYMVENADLRSLLKAILDEILKADDGYRTWVALRYNAHGAGELLNLWSPRRD"
misc_feature 1..>342 /locus_tag="PITG_09915" /note="RXLR phytopathogen effector protein, Avirulence activity; Region: RXLR; pfam16810" /db_xref="CDD:435595" ORIGIN
atgcgtatctcattcatgctgtctgttgcgatggctaccctctactttgcgatctgtaacgcgactggagacttcaatccaatcacgctgtcagcaatgggatcgccagagctcgtccacacgcttgacgaagtgcgcagcgacgctgggaccccgaaaagatatttacgagtacacggaaaggatggagaaaccggagcggaggagcgaggtcttggtgaactaatggctaagattaaatacatggtggagaatgcagacctcagatcattgcttaaggcaatcctggatgaaatattaaaggccgatgacgggtataggacttgggtggcgcttcggtataacgcacacggcgctggcgagctgttgaacttatggtctccaagaagagattga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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