GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2020-03-31 05:02:08, GGRNA.v2 : RefSeq release 99 (Mar, 2020)

LOCUS       XM_002902419             396 bp    mRNA    linear   PLN 22-JUL-2010
DEFINITION  Phytophthora infestans T30-4 secreted RxLR effector peptide
            protein, putative (PITG_09915) mRNA, complete cds.
ACCESSION   XM_002902419
VERSION     XM_002902419.1
KEYWORDS    RefSeq.
SOURCE      Phytophthora infestans T30-4
  ORGANISM  Phytophthora infestans T30-4
            Eukaryota; Stramenopiles; Oomycetes; Peronosporales; Phytophthora.
REFERENCE   1  (bases 1 to 396)
  AUTHORS   Nusbaum,C., Haas,B., Kamoun,S., Fry,W., Judelson,H., Ristaino,J.,
            Govers,F., Whisson,S., Birch,P., Birren,B., Lander,E., Galagan,J.,
            Zody,M., Devon,K., O'Neil,K., Zembek,L., Anderson,S., Jaffe,D.,
            Butler,J., Alvarez,P., Gnerre,S., Grabherr,M., Mauceli,E.,
            Brockman,W., Young,S., LaButti,K., Sykes,S., DeCaprio,D.,
            Crawford,M., Koehrsen,M., Engels,R., Montgomery,P., Pearson,M.,
            Howarth,C., Larson,L., White,J., O'Leary,S., Kodira,C., Zeng,Q.,
            Yandava,C. and Alvarado,L.
  CONSRTM   The Broad Institute Genome Sequencing Platform
  TITLE     Annotation of Phytophthora infestans T30-4
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 396)
  AUTHORS   Nusbaum,C., Kamoun,S., Fry,W., Judelson,H., Ristaino,J., Govers,F.,
            Whisson,S., Birch,P., Birren,B., Lander,E., Galagan,J., Zody,M.,
            Devon,K., O'Neil,K., Zembek,L., Anderson,S., Jaffe,D., Butler,J.,
            Alvarez,P., Gnerre,S., Grabherr,M., Mauceli,E., Brockman,W.,
            Young,S., LaButti,K., Sykes,S., DeCaprio,D., Crawford,M.,
            Koehrsen,M., Engels,R., Montgomery,P., Pearson,M., Howarth,C.,
            Larson,L., White,J., O'Leary,S., Kodira,C., Zeng,Q., Yandava,C. and
            Alvarado,L.
  CONSRTM   The Broad Institute Genome Sequencing Platform
  TITLE     Direct Submission
  JOURNAL   Submitted (23-OCT-2006) Broad Institute of MIT and Harvard, 7
            Cambridge Center, Cambridge, MA 02142, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_003303742).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..396
                     /organism="Phytophthora infestans T30-4"
                     /mol_type="mRNA"
                     /strain="T30-4"
                     /db_xref="taxon:403677"
     gene            <1..>396
                     /locus_tag="PITG_09915"
                     /db_xref="GeneID:9474690"
     CDS             1..396
                     /locus_tag="PITG_09915"
                     /codon_start=1
                     /product="secreted RxLR effector peptide protein,
                     putative"
                     /protein_id="XP_002902465.1"
                     /db_xref="GeneID:9474690"
                     /translation="
MRISFMLSVAMATLYFAICNATGDFNPITLSAMGSPELVHTLDEVRSDAGTPKRYLRVHGKDGETGAEERGLGELMAKIKYMVENADLRSLLKAILDEILKADDGYRTWVALRYNAHGAGELLNLWSPRRD"
     misc_feature    88..387
                     /locus_tag="PITG_09915"
                     /note="RXLR phytopathogen effector protein, Avirulence
                     activity; Region: RXLR; pfam16810"
                     /db_xref="CDD:293415"
ORIGIN      
atgcgtatctcattcatgctgtctgttgcgatggctaccctctactttgcgatctgtaacgcgactggagacttcaatccaatcacgctgtcagcaatgggatcgccagagctcgtccacacgcttgacgaagtgcgcagcgacgctgggaccccgaaaagatatttacgagtacacggaaaggatggagaaaccggagcggaggagcgaggtcttggtgaactaatggctaagattaaatacatggtggagaatgcagacctcagatcattgcttaaggcaatcctggatgaaatattaaaggccgatgacgggtataggacttgggtggcgcttcggtataacgcacacggcgctggcgagctgttgaacttatggtctccaagaagagattga
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]