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Previous release (v1)
2026-06-25 10:03:25, GGRNA.v2 : RefSeq release 233 (Jan, 2026)
LOCUS XM_002902419 396 bp mRNA linear PLN 26-JAN-2024
DEFINITION Phytophthora infestans T30-4 secreted RxLR effector peptide
protein, putative (PITG_09915), partial mRNA.
ACCESSION XM_002902419
VERSION XM_002902419.1
DBLINK BioProject: PRJNA49677
BioSample: SAMN02953670
KEYWORDS RefSeq.
SOURCE Phytophthora infestans T30-4
ORGANISM Phytophthora infestans T30-4
Eukaryota; Sar; Stramenopiles; Oomycota; Peronosporomycetes;
Peronosporales; Peronosporaceae; Phytophthora.
REFERENCE 1 (bases 1 to 396)
AUTHORS Nusbaum,C., Haas,B., Kamoun,S., Fry,W., Judelson,H., Ristaino,J.,
Govers,F., Whisson,S., Birch,P., Birren,B., Lander,E., Galagan,J.,
Zody,M., Devon,K., O'Neil,K., Zembek,L., Anderson,S., Jaffe,D.,
Butler,J., Alvarez,P., Gnerre,S., Grabherr,M., Mauceli,E.,
Brockman,W., Young,S., LaButti,K., Sykes,S., DeCaprio,D.,
Crawford,M., Koehrsen,M., Engels,R., Montgomery,P., Pearson,M.,
Howarth,C., Larson,L., White,J., O'Leary,S., Kodira,C., Zeng,Q.,
Yandava,C. and Alvarado,L.
CONSRTM The Broad Institute Genome Sequencing Platform
TITLE Annotation of Phytophthora infestans T30-4
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 396)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-JAN-2024) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 396)
AUTHORS Nusbaum,C., Kamoun,S., Fry,W., Judelson,H., Ristaino,J., Govers,F.,
Whisson,S., Birch,P., Birren,B., Lander,E., Galagan,J., Zody,M.,
Devon,K., O'Neil,K., Zembek,L., Anderson,S., Jaffe,D., Butler,J.,
Alvarez,P., Gnerre,S., Grabherr,M., Mauceli,E., Brockman,W.,
Young,S., LaButti,K., Sykes,S., DeCaprio,D., Crawford,M.,
Koehrsen,M., Engels,R., Montgomery,P., Pearson,M., Howarth,C.,
Larson,L., White,J., O'Leary,S., Kodira,C., Zeng,Q., Yandava,C. and
Alvarado,L.
CONSRTM The Broad Institute Genome Sequencing Platform
TITLE Direct Submission
JOURNAL Submitted (23-OCT-2006) Broad Institute of MIT and Harvard, 7
Cambridge Center, Cambridge, MA 02142, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. This record is derived from an annotated genomic
sequence (NW_003303742).
COMPLETENESS: incomplete on both ends.
FEATURES Location/Qualifiers
source 1..396
/organism="Phytophthora infestans T30-4"
/mol_type="mRNA"
/strain="T30-4"
/type_material="culture from epitype of Botrytis
infestans"
/db_xref="taxon:403677"
/chromosome="Unknown"
gene <1..>396
/locus_tag="PITG_09915"
/db_xref="GeneID:9474690"
CDS 1..396
/locus_tag="PITG_09915"
/codon_start=1
/product="secreted RxLR effector peptide protein,
putative"
/protein_id="XP_002902465.1"
/db_xref="GeneID:9474690"
/translation="
MRISFMLSVAMATLYFAICNATGDFNPITLSAMGSPELVHTLDEVRSDAGTPKRYLRVHGKDGETGAEERGLGELMAKIKYMVENADLRSLLKAILDEILKADDGYRTWVALRYNAHGAGELLNLWSPRRD"
misc_feature 1..>342
/locus_tag="PITG_09915"
/note="RXLR phytopathogen effector protein, Avirulence
activity; Region: RXLR; pfam16810"
/db_xref="CDD:465277"
ORIGIN
atgcgtatctcattcatgctgtctgttgcgatggctaccctctactttgcgatctgtaacgcgactggagacttcaatccaatcacgctgtcagcaatgggatcgccagagctcgtccacacgcttgacgaagtgcgcagcgacgctgggaccccgaaaagatatttacgagtacacggaaaggatggagaaaccggagcggaggagcgaggtcttggtgaactaatggctaagattaaatacatggtggagaatgcagacctcagatcattgcttaaggcaatcctggatgaaatattaaaggccgatgacgggtataggacttgggtggcgcttcggtataacgcacacggcgctggcgagctgttgaacttatggtctccaagaagagattga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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