2024-04-20 15:24:23, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_002808721 2586 bp mRNA linear INV 06-MAY-2020 DEFINITION Plasmodium falciparum 3D7 rhoptry-associated membrane antigen (PF3D7_0707300), partial mRNA. ACCESSION XM_002808721 VERSION XM_002808721.1 DBLINK BioProject: PRJNA148 BioSample: SAMN00102897 KEYWORDS RefSeq. SOURCE Plasmodium falciparum 3D7 ORGANISM Plasmodium falciparum 3D7 Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania). REFERENCE 1 AUTHORS Seeger,K., Murphy,L., Harris,D., Berriman,M., Pain,A., Hall,N., Quail,M. and Barrell,B. JOURNAL Unpublished REFERENCE 2 (bases 1 to 2586) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (06-MAY-2020) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 CONSRTM Pathogen Informatics TITLE Direct Submission JOURNAL Submitted (28-JUN-2019) WTSI, Pathogen Informatics, Wellcome Trust Sanger Institute, CB10 1SA, United Kingdom REFERENCE 4 AUTHORS Aslett,M. TITLE Direct Submission JOURNAL Submitted (10-MAR-2009) P.falciparum Genome Sequencing Consortium, The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK REFERENCE 5 AUTHORS Seeger,K., Murphy,L., Harris,D., Berriman,M., Pain,A., Hall,N., Quail,M. and Barrell,B. TITLE Direct Submission JOURNAL Submitted (20-SEP-2002) P.falciparum Genome Sequencing Consortium, The Welcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_004328). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2586 /organism="Plasmodium falciparum 3D7" /mol_type="mRNA" /isolate="3D7" /db_xref="taxon:36329" /chromosome="7" gene <1..>2586 /locus_tag="PF3D7_0707300" /db_xref="GeneID:9221885" CDS 1..2586 /locus_tag="PF3D7_0707300" /codon_start=1 /product="rhoptry-associated membrane antigen" /protein_id="XP_002808767.1" /db_xref="EnsemblGenomes-Gn:PF3D7_0707300" /db_xref="GeneID:9221885" /db_xref="GOA:C0H4M0" /db_xref="UniProtKB/TrEMBL:C0H4M0" /translation="
MNVLLLSLLVVQNIVTYLEQIKNGISGHYTEDHNIKNNNCISFSDYERSIKNFSISSHAENNYDNIINEYKKIKDINNNINILSSVHRKGRILYDSFLEINKLENDKKEKHEKEDEYEDNDESFLETEEYEDNEDEKYNKDEDDYAESFIETDEYEDNEDDKYNKDEDDYSESFIETDEYDDNEEEQYNKDEDDYTDSFIETDHYENNDDKNEEEEEYNDQDNDYGYNFLETDEYDDSEEYDYDDKEYGESFLEKEEGEEMKDEEMKDEEMKDVEMKDEEMKDEEMKYDEMKNEEMKYDEMKDEVMKDEEMKDEVMKDEEMKDEQMKYEEFKNEESKNEESKNEESKNEESKNEEFKNEESKNEEFKNEEFKNEDMSYDEYMGYKKKEEDESYNTFNGTKKNNTSNSFLEKDLQGDSDDELHSTFYSKNVDKENYDDKNIFYGYSDNDDESFLETDSYEEYEDEDKDVEDEYEESFLQNDEKKMVFYDLYKPEENESYYEKKQKKEEKEEKEEKEQSLNKQNDMEDQEDNEEYKFEEENKEDLLDVQQDEELPSEGKQKVKGKSFDNEHLNEIQNVSDVHAFIQKDMKYLDDLIDEEQTIKDAVKKSAYKGNKKLGNNKKSQMILEEEPEENFEEDADEELNKLMEQEKNIVDKEIKNSKANKSNKKLQFNNTNKQNKMYMKNEYNNKTKNNKNNKFEQQNYDESYMDDDYEQNEEFNDNNQSEDMKETNELDKINDELLTDQGPNEDTLLENNNKIFDNKFVAHKKREKSISPHSYQKVSTKVQNKEDMENKEEKQLINDEAAMTAEELVELENTEDVNTPTMVETEEIDSDENGNKSSSSISYISSIVFLMVTLLYFMN"
misc_feature <358..1260 /locus_tag="PF3D7_0707300" /note="Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]; Region: MDN1; COG5271" /db_xref="CDD:227596" misc_feature <823..2217 /locus_tag="PF3D7_0707300" /note="Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]; Region: MDN1; COG5271" /db_xref="CDD:227596" misc_feature <826..978 /locus_tag="PF3D7_0707300" /note="pentapeptide MXKDX repeat protein; Region: penta_MxKDx; TIGR02953" /db_xref="CDD:131998" ORIGIN
atgaatgttctacttctgtctttgcttgttgtacaaaatatagtaacatatttagaacaaataaaaaatggtataagcggtcattatacagaagatcataatattaagaataataattgtattagcttttctgattatgagagatcaataaaaaacttttctatttcttctcatgcagaaaataattatgataatataataaatgaatataaaaaaataaaagatattaacaacaatataaacatattatcatcagtacatagaaaaggaagaatattgtacgacagctttttagaaataaataagttggaaaatgacaaaaaagagaaacatgaaaaagaagatgaatatgaagataatgatgaaagctttttagaaactgaagaatatgaagataatgaagatgaaaaatataacaaagatgaagatgattatgcagaaagttttattgagactgatgaatatgaagataatgaagatgataaatataataaagatgaagatgattattcagaaagctttattgagactgatgaatatgatgataatgaagaagaacaatataataaagatgaagatgattatacagatagttttattgagacagaccattatgaaaataacgatgataaaaatgaagaagaagaagaatataatgatcaagataatgattatggatataactttttagaaactgacgaatacgatgatagcgaagaatatgattacgacgataaggaatacggagagagtttcctcgaaaaagaagaaggtgaagaaatgaaagatgaagagatgaaagatgaagaaatgaaagatgtagaaatgaaagatgaagagatgaaagatgaagagatgaaatatgacgagatgaaaaatgaagagatgaaatatgacgagatgaaagatgaagtgatgaaagatgaagagatgaaagatgaagtgatgaaagatgaagagatgaaagacgaacaaatgaaatatgaagaattcaaaaatgaagaatccaaaaatgaagaatccaaaaatgaagaatccaaaaatgaagaatccaaaaatgaagaattcaaaaatgaagaatccaaaaatgaagaatttaaaaatgaagaattcaaaaatgaagatatgtcttatgatgaatacatgggatataaaaagaaagaagaagatgaatcatataatacattcaatggtactaagaaaaataacacatccaacagcttcctcgaaaaagatttacaaggagattctgacgatgaattacatagtaccttttattccaaaaatgtagataaagaaaattatgatgataaaaatattttctatggttatagtgataatgatgatgaaagctttttagaaactgattcttatgaagaatatgaagacgaagataaagatgttgaagatgagtatgaagaaagtttcttacaaaatgatgagaaaaaaatggtcttttatgatttatacaagccagaagaaaatgaatcttattatgaaaagaaacaaaagaaagaagaaaaagaagagaaagaagagaaagaacaaagtttgaacaaacaaaacgatatggaagaccaagaagataatgaagaatataaatttgaagaagaaaataaagaagaccttctagatgtccaacaagatgaagaattaccaagtgaaggaaaacaaaaagtaaaaggaaaatcattcgataatgaacatttgaatgaaatacaaaatgttagcgacgtacatgcatttatacaaaaagatatgaaatatttagatgatctcatagatgaagagcaaactattaaagatgccgtcaaaaaaagtgcttataaaggaaataagaaattaggaaataataaaaaatcacaaatgatactggaagaagaaccagaagaaaattttgaagaagatgctgatgaagaattaaataaactaatggaacaagaaaaaaatattgtagataaagaaatcaaaaatagtaaagcaaataaaagcaacaaaaaattacaattcaataacactaataaacaaaacaaaatgtatatgaaaaacgaatataataataagacaaaaaataataaaaacaataaatttgaacaacaaaattatgatgaatcatatatggatgatgattatgaacaaaatgaagaatttaatgataataatcaaagcgaagatatgaaagaaacaaatgaactcgataaaattaatgatgaactattaactgatcaaggaccaaacgaagatacattattagaaaataataataaaattttcgataataaatttgtagcacataaaaaaagagaaaaaagtatatccccacacagttaccaaaaggtatctaccaaagtacaaaataaggaagacatggaaaataaggaagagaaacaattgataaatgatgaagccgctatgactgctgaagaattagtcgaattagaaaacacagaagatgtgaatacacctacaatggtagaaacagaagaaattgattctgatgaaaatggaaataagtcaagcagttcaatatcatacattagttctatagtattccttatggtcacccttttatattttatgaattaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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