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2024-04-20 15:24:23, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_002808721            2586 bp    mRNA    linear   INV 06-MAY-2020
DEFINITION  Plasmodium falciparum 3D7 rhoptry-associated membrane antigen
            (PF3D7_0707300), partial mRNA.
ACCESSION   XM_002808721
VERSION     XM_002808721.1
DBLINK      BioProject: PRJNA148
            BioSample: SAMN00102897
KEYWORDS    RefSeq.
SOURCE      Plasmodium falciparum 3D7
  ORGANISM  Plasmodium falciparum 3D7
            Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida;
            Plasmodiidae; Plasmodium; Plasmodium (Laverania).
REFERENCE   1
  AUTHORS   Seeger,K., Murphy,L., Harris,D., Berriman,M., Pain,A., Hall,N.,
            Quail,M. and Barrell,B.
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2586)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAY-2020) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JUN-2019) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
REFERENCE   4
  AUTHORS   Aslett,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAR-2009) P.falciparum Genome Sequencing Consortium,
            The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus,
            Hinxton, Cambridge CB10 1SA, UK
REFERENCE   5
  AUTHORS   Seeger,K., Murphy,L., Harris,D., Berriman,M., Pain,A., Hall,N.,
            Quail,M. and Barrell,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-SEP-2002) P.falciparum Genome Sequencing Consortium,
            The Welcome Trust Sanger Institute, Wellcome Trust Genome Campus,
            Hinxton, Cambridge CB10 1SA, UK
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_004328).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..2586
                     /organism="Plasmodium falciparum 3D7"
                     /mol_type="mRNA"
                     /isolate="3D7"
                     /db_xref="taxon:36329"
                     /chromosome="7"
     gene            <1..>2586
                     /locus_tag="PF3D7_0707300"
                     /db_xref="GeneID:9221885"
     CDS             1..2586
                     /locus_tag="PF3D7_0707300"
                     /codon_start=1
                     /product="rhoptry-associated membrane antigen"
                     /protein_id="XP_002808767.1"
                     /db_xref="EnsemblGenomes-Gn:PF3D7_0707300"
                     /db_xref="GeneID:9221885"
                     /db_xref="GOA:C0H4M0"
                     /db_xref="UniProtKB/TrEMBL:C0H4M0"
                     /translation="
MNVLLLSLLVVQNIVTYLEQIKNGISGHYTEDHNIKNNNCISFSDYERSIKNFSISSHAENNYDNIINEYKKIKDINNNINILSSVHRKGRILYDSFLEINKLENDKKEKHEKEDEYEDNDESFLETEEYEDNEDEKYNKDEDDYAESFIETDEYEDNEDDKYNKDEDDYSESFIETDEYDDNEEEQYNKDEDDYTDSFIETDHYENNDDKNEEEEEYNDQDNDYGYNFLETDEYDDSEEYDYDDKEYGESFLEKEEGEEMKDEEMKDEEMKDVEMKDEEMKDEEMKYDEMKNEEMKYDEMKDEVMKDEEMKDEVMKDEEMKDEQMKYEEFKNEESKNEESKNEESKNEESKNEEFKNEESKNEEFKNEEFKNEDMSYDEYMGYKKKEEDESYNTFNGTKKNNTSNSFLEKDLQGDSDDELHSTFYSKNVDKENYDDKNIFYGYSDNDDESFLETDSYEEYEDEDKDVEDEYEESFLQNDEKKMVFYDLYKPEENESYYEKKQKKEEKEEKEEKEQSLNKQNDMEDQEDNEEYKFEEENKEDLLDVQQDEELPSEGKQKVKGKSFDNEHLNEIQNVSDVHAFIQKDMKYLDDLIDEEQTIKDAVKKSAYKGNKKLGNNKKSQMILEEEPEENFEEDADEELNKLMEQEKNIVDKEIKNSKANKSNKKLQFNNTNKQNKMYMKNEYNNKTKNNKNNKFEQQNYDESYMDDDYEQNEEFNDNNQSEDMKETNELDKINDELLTDQGPNEDTLLENNNKIFDNKFVAHKKREKSISPHSYQKVSTKVQNKEDMENKEEKQLINDEAAMTAEELVELENTEDVNTPTMVETEEIDSDENGNKSSSSISYISSIVFLMVTLLYFMN"
     misc_feature    <358..1260
                     /locus_tag="PF3D7_0707300"
                     /note="Midasin, AAA ATPase with vWA domain, involved in
                     ribosome maturation [Translation, ribosomal structure and
                     biogenesis]; Region: MDN1; COG5271"
                     /db_xref="CDD:227596"
     misc_feature    <823..2217
                     /locus_tag="PF3D7_0707300"
                     /note="Midasin, AAA ATPase with vWA domain, involved in
                     ribosome maturation [Translation, ribosomal structure and
                     biogenesis]; Region: MDN1; COG5271"
                     /db_xref="CDD:227596"
     misc_feature    <826..978
                     /locus_tag="PF3D7_0707300"
                     /note="pentapeptide MXKDX repeat protein; Region:
                     penta_MxKDx; TIGR02953"
                     /db_xref="CDD:131998"
ORIGIN      
atgaatgttctacttctgtctttgcttgttgtacaaaatatagtaacatatttagaacaaataaaaaatggtataagcggtcattatacagaagatcataatattaagaataataattgtattagcttttctgattatgagagatcaataaaaaacttttctatttcttctcatgcagaaaataattatgataatataataaatgaatataaaaaaataaaagatattaacaacaatataaacatattatcatcagtacatagaaaaggaagaatattgtacgacagctttttagaaataaataagttggaaaatgacaaaaaagagaaacatgaaaaagaagatgaatatgaagataatgatgaaagctttttagaaactgaagaatatgaagataatgaagatgaaaaatataacaaagatgaagatgattatgcagaaagttttattgagactgatgaatatgaagataatgaagatgataaatataataaagatgaagatgattattcagaaagctttattgagactgatgaatatgatgataatgaagaagaacaatataataaagatgaagatgattatacagatagttttattgagacagaccattatgaaaataacgatgataaaaatgaagaagaagaagaatataatgatcaagataatgattatggatataactttttagaaactgacgaatacgatgatagcgaagaatatgattacgacgataaggaatacggagagagtttcctcgaaaaagaagaaggtgaagaaatgaaagatgaagagatgaaagatgaagaaatgaaagatgtagaaatgaaagatgaagagatgaaagatgaagagatgaaatatgacgagatgaaaaatgaagagatgaaatatgacgagatgaaagatgaagtgatgaaagatgaagagatgaaagatgaagtgatgaaagatgaagagatgaaagacgaacaaatgaaatatgaagaattcaaaaatgaagaatccaaaaatgaagaatccaaaaatgaagaatccaaaaatgaagaatccaaaaatgaagaattcaaaaatgaagaatccaaaaatgaagaatttaaaaatgaagaattcaaaaatgaagatatgtcttatgatgaatacatgggatataaaaagaaagaagaagatgaatcatataatacattcaatggtactaagaaaaataacacatccaacagcttcctcgaaaaagatttacaaggagattctgacgatgaattacatagtaccttttattccaaaaatgtagataaagaaaattatgatgataaaaatattttctatggttatagtgataatgatgatgaaagctttttagaaactgattcttatgaagaatatgaagacgaagataaagatgttgaagatgagtatgaagaaagtttcttacaaaatgatgagaaaaaaatggtcttttatgatttatacaagccagaagaaaatgaatcttattatgaaaagaaacaaaagaaagaagaaaaagaagagaaagaagagaaagaacaaagtttgaacaaacaaaacgatatggaagaccaagaagataatgaagaatataaatttgaagaagaaaataaagaagaccttctagatgtccaacaagatgaagaattaccaagtgaaggaaaacaaaaagtaaaaggaaaatcattcgataatgaacatttgaatgaaatacaaaatgttagcgacgtacatgcatttatacaaaaagatatgaaatatttagatgatctcatagatgaagagcaaactattaaagatgccgtcaaaaaaagtgcttataaaggaaataagaaattaggaaataataaaaaatcacaaatgatactggaagaagaaccagaagaaaattttgaagaagatgctgatgaagaattaaataaactaatggaacaagaaaaaaatattgtagataaagaaatcaaaaatagtaaagcaaataaaagcaacaaaaaattacaattcaataacactaataaacaaaacaaaatgtatatgaaaaacgaatataataataagacaaaaaataataaaaacaataaatttgaacaacaaaattatgatgaatcatatatggatgatgattatgaacaaaatgaagaatttaatgataataatcaaagcgaagatatgaaagaaacaaatgaactcgataaaattaatgatgaactattaactgatcaaggaccaaacgaagatacattattagaaaataataataaaattttcgataataaatttgtagcacataaaaaaagagaaaaaagtatatccccacacagttaccaaaaggtatctaccaaagtacaaaataaggaagacatggaaaataaggaagagaaacaattgataaatgatgaagccgctatgactgctgaagaattagtcgaattagaaaacacagaagatgtgaatacacctacaatggtagaaacagaagaaattgattctgatgaaaatggaaataagtcaagcagttcaatatcatacattagttctatagtattccttatggtcacccttttatattttatgaattaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]