2024-05-03 15:57:31, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_002419346 5664 bp mRNA linear PLN 28-AUG-2017 DEFINITION Candida dubliniensis CD36 fatty acid synthase subunit alpha (ec 2.3.1.86) [includes: acyl carrier; 3-oxoacyl-[acyl-carrier-protein] reductase (ec 1.1.1.100) (beta-ketoacyl reductase); 3-oxoacyl-[acyl-carrier-protein] synthase (ec 2.3.1.41) (beta-ketoacyl synthase)], putative (CD36_84800), partial mRNA. ACCESSION XM_002419346 VERSION XM_002419346.1 DBLINK BioProject: PRJNA38659 BioSample: SAMEA2272258 KEYWORDS RefSeq. SOURCE Candida dubliniensis CD36 ORGANISM Candida dubliniensis CD36 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 AUTHORS Jackson,A.P., Gamble,J.A., Yeomans,T., Moran,G.P., Saunders,D., Harris,D., Aslett,M., Barrell,J.F., Butler,G., Citiulo,F., Coleman,D.C., de Groot,P.W., Goodwin,T.J., Quail,M.A., McQuillan,J., Munro,C.A., Pain,A., Poulter,R.T., Rajandream,M.A., Renauld,H., Spiering,M.J., Tivey,A., Gow,N.A., Barrell,B., Sullivan,D.J. and Berriman,M. TITLE Comparative genomics of the fungal pathogens Candida dubliniensis and Candida albicans JOURNAL Genome Res. 19 (12), 2231-2244 (2009) PUBMED 19745113 REFERENCE 2 (bases 1 to 5664) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (28-AUG-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5664) AUTHORS Gamble,J.A. TITLE Direct Submission JOURNAL Submitted (19-JAN-2009) Gamble J.A., Pathogen Sequencing Unit, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UNITED KINGDOM COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_012862). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..5664 /organism="Candida dubliniensis CD36" /mol_type="mRNA" /strain="CD36" /type_material="type material of Candida dubliniensis" /db_xref="taxon:573826" /chromosome="3" gene <1..>5664 /locus_tag="CD36_84800" /db_xref="GeneID:8047215" CDS 1..5664 /locus_tag="CD36_84800" /EC_number="1.1.1.100" /EC_number="2.3.1.86" /EC_number="2.3.1.41" /inference="similar to AA sequence:UniProt:P19097" /inference="similar to AA sequence:UniProt:P43098" /note="In S. cerevisiae: catalyzes the synthesis of long-chain saturated fatty acids" /codon_start=1 /transl_table=12 /product="fatty acid synthase subunit alpha (ec 2.3.1.86) [includes: acyl carrier; 3-oxoacyl-[acyl-carrier-protein] reductase (ec 1.1.1.100) (beta-ketoacyl reductase); 3-oxoacyl-[acyl-carrier-protein] synthase (ec 2.3.1.41) (beta-ketoacyl synthase)], putative" /protein_id="XP_002419391.1" /db_xref="GeneID:8047215" /db_xref="GOA:B9WE74" /db_xref="InterPro:IPR001227" /db_xref="InterPro:IPR002582" /db_xref="InterPro:IPR004568" /db_xref="InterPro:IPR008278" /db_xref="InterPro:IPR014030" /db_xref="InterPro:IPR014031" /db_xref="InterPro:IPR016035" /db_xref="InterPro:IPR016038" /db_xref="InterPro:IPR016039" /db_xref="InterPro:IPR016040" /db_xref="InterPro:IPR018201" /db_xref="InterPro:IPR026025" /db_xref="UniProtKB/TrEMBL:B9WE74" /translation="
MKPEIEQELSHTLLTELLAYQFASPVRWIETQDVFLKQHNTERIIEIGPSPTLSGMANRTIKAKYESYDAALSLQRQVLCYSKDAKEIYYKPDPADLAPKETPKKEENATPAPAAAAAAATAAAPTPAAAPTPAPVSAGPVESIPDEPVKASLLIHVLVAQKLKKPLDAVPMTKAIKDLVNGKSTVQNEILGDLGKEFGSTPEKPEDTPLEELAEQFQDSFSGQLGKTSTSLISRLMSSKMPGGFSITTARKYLESRFGLGAGRQDSVLLMALTNEPANRLAAEADAKAFFDGIAQKYASSAGISLSSGSASGAGAANGGGAVVDSAALDALTAENKKLAKQQLEVLARYLQVDLNKGAKSFIKEKEASAVLQKELDLWEAEHGEFYAKGIQPTFSALKSRTYDSYWNWARQDVLSMYFDIIFGKLTSVDRETINQCIQIMNRANPTLIKFMQYHIDHCPEYKGETYKLAKRLGQQLIDNCKQVLSEDPVYKDVSRITGPKTKVSAKGNIEYEETQKDSVRKFEQYVYEMAQGGAMTKVSQPTIQEDLARVYKAISKQASKDSKLELQRVYEDLLKVVESSKEIETEQLTKDILQAATVPTTPTEEVEDPCTPSSDDEIASLPDKTSIIQPVSSTIPSQTIPFLHIQKKTKDGWEYNKKLSSLYLDGLESAAINGLTFRDKYVLVTGAGAGSIGAEILQGLISGGAKVVVTTSRFSKKVTEYYQNMYARYGAAGSTLIVVPFNQGSKQDVDALVQYIYDEPKKGGLGWDLDAIIPFAAIPENGNGLDNIDSKSEFAHRIMLTNLLRLLGAVKSRKATDTRPAQCILPLSPNHGTFGFDGLYSESKISLETLFNRWYSEDWGSKLTICGAVIGWTRGTGLMSANNIIAEGIEKLGVRTFSQKEMAFNILGLLTPEIVQLCQEEPVMADLNGGLQFIENLKDFTSKLRTDLLETADIRRAVSIESAIEQKVVNGDNVDANYSKVMVEPRANLKFDFPTLKSYDEIKQIAPELEGMLDLENVVVVTGFAEVGPWGNSRTRWEMEAYGEFSLEGAIEMAWIMGFIKYHNGNLKGKPYSGWVDAKTQTPIDEKDIKSKYEEEILEHSGIRLIEPELFNGYDPKKKQMIQEVVVQHDLEPFECSKETAEQYKHEHGEKCEIFEIEESGEYTVRILKGATLYVPKALRFDRLVAGQIPTGWDARTYGIPEDTISQVDPITLYVLVATVEALLSAGITDPYEFYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFADRPVQNDILQESFINTMSAWVNMLLLSSSGPIKTPVGACATAVESVDIGIETILSGKAKVVLVGGYDDFQEEGSYEFANMNATSNSIEEFKHGRTPKEMSRPTTTTRNGFMEAQGSGIQVIMTADLALKMGVPIHAVLAMTATATDKIGRSVPAPGKGILTTAREHHGNLKYPSPLLNIKYRKRQLNKRLEQIKSWEETELSYLQEEAELAKEEFGDEFSMHEFLKERTEEVYRESKRQVSDAKKQWGNSFYKSDPRIAPLRGSLAAFNLTIDDLGVASFHGTSTVANDKNESATINNMMKHLGRSEGNPVFGVFQKYLTGHPKGAAGAWMLNGAIQILETGLVPGNRNADNVDKLLEEYEYVLYPSRSIQTDGIKAVSVTSFGFGQKGAQAVVVHPDYLFAVLDRSTYEEYASKVSARNKKTYRYMHNAITRNTMFVAKDKAPYSDELEQPVYLDPLARVEESKKKLVFSDKTIQSNQSYVGEVAQKTAKALSTLNKSSKGVGVDVELLSAINLDNETFIERNFTGNEIEYCANTAHPQASFTGTWSAKEAVFKALGVESKGAGASLIDIEITRDINGAPKVVLHGEAKKAATKAGVKNVSISISHDDFQATAVALSEF"
misc_feature <16..186 /locus_tag="CD36_84800" /note="Malonyl CoA-acyl carrier protein transacylase [Lipid transport and metabolism]; Region: FabD; COG0331" /db_xref="CDD:223408" misc_feature 277..3510 /locus_tag="CD36_84800" /note="3-oxoacyl-ACP reductase domain of yeast-type FAS1 [Lipid transport and metabolism]; Region: FabG2; COG4982" /db_xref="CDD:227315" misc_feature 3412..4983 /locus_tag="CD36_84800" /note="'elongating' condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases.They are characterized by the utlization of acyl carrier protein (ACP) thioesters as...; Region: elong_cond_enzymes; cd00828" /db_xref="CDD:238424" misc_feature order(3916..3918,4642..4644,4765..4767) /locus_tag="CD36_84800" /note="active site" /db_xref="CDD:238424" misc_feature 5296..5655 /locus_tag="CD36_84800" /note="phosphopantetheine--protein transferase domain; Region: pantethn_trn; TIGR00556" /db_xref="CDD:273136" ORIGIN
atgaaaccagaaattgaacaagagttatcccacactttgttaactgaattattagcatatcaatttgcttctccggttagatggatcgaaactcaggatgtctttttgaaacagcacaacactgaaagaatcattgaaattggaccttcaccaaccttatctggtatggccaatagaactatcaaagccaaatatgaatcttatgatgccgctttatctttgcaacgtcaagttttgtgttactccaaagatgctaaagagatttactacaaaccagatccagcagatcttgctcctaaggaaacaccaaagaaagaggagaatgccacaccagcccccgctgctgctgctgctgctgctactgccgctgccccaaccccagctgctgccccgaccccagcacctgtaagtgctggcccagttgagtctataccagatgaaccagttaaggcttccttattaatccatgttttggttgcacagaaattaaagaaacctttagatgcagttccaatgaccaaggcaattaaggatttggttaatggtaaatccactgttcaaaatgaaattcttggtgatttgggtaaagaatttggttccactcccgagaaaccagaggacactccattggaagaattagctgaacaattccaagattcattcagtggccaattaggaaagacttctacttcattgattagtagattaatgtcctcaaagatgccaggtgggttttccattactacagctagaaaatacttggaatcaagatttggtttgggtgctggtagacaagactctgttttgttgatggctttgacaaatgaaccagccaacagattggccgctgaagctgatgcaaaagctttctttgatggaattgctcaaaagtatgcatcaagtgctggcatttccttgtcttcaggatcagcttctggtgcaggtgctgcaaatggtggtggtgctgttgttgacagtgctgctttagatgcattgacagctgaaaacaagaaattagccaaacagcaattagaagtattagcaagatacttacaggttgacttgaacaaaggagccaaatcttttattaaggaaaaagaagcttctgccgttttgcaaaaggagttagatttgtgggaagctgaacatggagaattttatgctaagggtatccaaccaaccttctcagcattaaagtctagaacctatgattcatattggaattgggctcgacaagacgttttgtcaatgtacttcgacattatttttggaaagttaacttctgtcgatagagaaactattaaccaatgtattcaaattatgaacagagctaatccaactttaatcaagtttatgcaatatcatattgatcattgtccagaatacaaaggtgaaacttataaattggccaagagattgggtcaacaattaattgacaactgtaaacaagttttatctgaagatccagtttacaaagatgtttcgagaatcactggtccaaagactaaagtcagtgctaagggtaacattgagtacgaagaaactcaaaaggactctgttagaaaatttgaacagtacgtgtatgaaatggcccaaggtggtgctatgacaaaagtcagtcaaccaactattcaagaagatttagccagagtttacaaggctatttccaaacaagcttccaaagacagtaaattggagttacaaagagtttatgaggatttattgaaggtggttgaaagttccaaggaaattgaaaccgaacaattgactaaagacattttgcaagctgcaacagttccaacaacaccaacagaagaagtagaagatccttgcactccttcttccgatgatgaaattgcttctttaccagataagacttctatcatccaacctgtctcgtctactattccatctcaaactattccattcttgcacattcagaaaaagaccaaagacggttgggagtacaataagaagttgtcttctctctacttggatggattggaatcagctgccattaatggtttaacctttagagacaagtatgtcttggttactggtgctggtgctggctccattggtgccgaaattttgcaaggtttaatcagtggtggtgccaaagttgttgttacaacctctagattttctaagaaagttaccgagtattatcaaaacatgtatgccagatacggtgcagctggatctaccttaattgttgttcccttcaaccaaggatccaaacaagatgttgatgcattggtccaatacatttatgacgagccaaagaaaggcggtttaggctgggatttggatgcaattattccatttgctgctattccagaaaatggtaatggtctcgacaacattgattctaaatctgaatttgcccacagaatcatgttaacaaaccttttaagattgttgggtgctgtcaaatccagaaaggcaacagatactagaccagctcaatgtattttgccattatctccaaatcacggaacgtttggatttgacgggttgtactccgaatctaaaatctcattggaaactttattcaacagatggtattctgaagactggggatccaagttgaccatttgtggtgccgtcattgggtggactagaggtacaggtttaatgagtgccaacaacattattgctgaaggtattgaaaaattaggtgtcagaactttctcacaaaaagaaatggctttcaatattttaggattattgacaccagagattgtacaattatgtcaagaagaacctgttatggctgacttgaatggtggcttgcagttcatcgaaaacttgaaggatttcacatctaaattgagaacagatttattggaaactgcagacatcagaagagccgtgtctattgaatcagccatcgaacaaaaagttgtcaatggtgataacgtcgatgcaaactattccaaggttatggttgaacctagagccaacttgaaatttgatttcccaactttgaaatcttatgatgaaatcaaacaaattgctccagaattggagggtatgttggacttggagaatgttgttgttgtgacaggttttgctgaagttggtccatggggtaactccagaacaagatgggaaatggaagcctatggtgaattttctttggaaggtgctattgaaatggcttggatcatggggttcattaaatatcacaatggtaatttgaaaggaaaaccatattctggatgggttgatgccaagactcaaactccaatcgacgaaaaagatattaaatccaaatacgaagaagagattttagaacattctggtattagattgattgagccagaattgttcaatggctatgacccaaagaagaaacaaatgattcaagaagttgtggttcaacacgatttagagccatttgaatgttccaaagaaacagccgagcaatacaaacacgaacacggtgaaaaatgtgaaattttcgaaattgaagaaagcggtgaatacacagtcagaatcttgaaaggtgcaactttgtacgttcctaaagctttgagatttgatagattagttgctggtcaaattccaaccggttgggacgctcgtacctatggtattccagaagacactattagtcaagttgacccaattactttgtatgtgttggttgccactgttgaggctttattgtctgctggtatcactgatccatacgaattctacaaatacgttcatgtgtctgaagttggtaattgctctggttctggtatgggaggtgtttctgctttgagaggaatgtttaaagatagatttgctgacagaccagttcaaaatgatattttacaagaatcgtttattaacactatgtctgcttgggtcaatatgttgttgttgtcttcctctggtccaatcaagactccagttggtgcttgtgccactgctgttgaatcggttgacattggtattgaaactattttgtctggtaaggctaaagtggtgttggtaggtggttacgatgacttccaagaagaagggtcctacgaattcgccaacatgaatgctacttctaattctattgaagaattcaaacacggaagaacaccaaaagaaatgtccagaccaaccacgaccaccagaaatggtttcatggaagctcaaggttctggtattcaagttattatgactgctgatttagctcttaaaatgggtgttccaatccatgctgtgttggccatgactgctactgccactgataaaattggtagatctgttccagcaccaggtaagggtatcttgactactgccagagaacatcatggaaacttgaagtacccatctccacttttaaacatcaaatatagaaaaagacaattgaacaaaagattggaacaaatcaaatcctgggaagaaacagaactttcttacttgcaagaagaagccgagttggccaaggaagaatttggtgacgaattttccatgcatgaatttttgaaagaaagaaccgaagaagtgtaccgtgaatcaaagagacaagtttcagacgccaagaaacaatggggtaattcattctacaagtctgatccaagaattgctccattaagagggtctttggctgcctttaacttaaccattgatgatcttggtgttgcatcattccatggtacttctactgttgctaacgataagaatgaatcagctacaatcaacaacatgatgaagcacttgggtagatccgaaggtaacccagtatttggtgtgttccaaaaatacttgacaggtcatccaaaaggtgctgctggtgcttggatgttgaatggtgccattcaaattcttgagacgggtcttgttccaggaaatagaaatgctgataatgttgataaacttttagaggaatacgaatatgtattgtacccatcaagatcaattcaaaccgatggtattaaggctgtttctgttacatcatttggtttcggtcaaaaaggtgcacaagcagttgttgttcatccagattacttgtttgctgttttggatagatccacttatgaagaatacgctagcaaggtttccgctagaaacaaaaagacctaccgttacatgcacaatgcaattaccagaaacaccatgtttgttgccaaagataaggctccatacagtgacgaattggaacaaccagtttatttggatccattggctcgtgttgaagaaagcaagaagaagttggtattcagtgacaaaacaattcaatcgaatcaatcttatgttggtgaagttgctcaaaaaaccgctaaagcgttatcaactttaaacaaatcttcaaaaggagttggagtagatgttgaattgttgtcagcaattaatttggacaacgagacctttattgaaagaaactttactggtaatgaaattgaatactgtgcaaatactgctcatccacaagcctcatttactggaacttggtcagcaaaggaagctgtttttaaagccttaggcgttgaatcaaaaggtgctggagcaagcttgattgatattgaaatcacccgtgacattaatggtgctcctaaagtagttttgcatggtgaggccaaaaaagctgctactaaagctggtgttaaaaacgtaagtatttcaatttctcatgatgatttccaagctactgctgttgctttaagtgaattttag
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@meso_cacase at
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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