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2024-05-03 15:57:31, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_002419346            5664 bp    mRNA    linear   PLN 28-AUG-2017
DEFINITION  Candida dubliniensis CD36 fatty acid synthase subunit alpha (ec
            2.3.1.86) [includes: acyl carrier; 3-oxoacyl-[acyl-carrier-protein]
            reductase (ec 1.1.1.100) (beta-ketoacyl reductase);
            3-oxoacyl-[acyl-carrier-protein] synthase (ec 2.3.1.41)
            (beta-ketoacyl synthase)], putative (CD36_84800), partial mRNA.
ACCESSION   XM_002419346
VERSION     XM_002419346.1
DBLINK      BioProject: PRJNA38659
            BioSample: SAMEA2272258
KEYWORDS    RefSeq.
SOURCE      Candida dubliniensis CD36
  ORGANISM  Candida dubliniensis CD36
            Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
            Saccharomycetes; Saccharomycetales; Debaryomycetaceae;
            Candida/Lodderomyces clade; Candida.
REFERENCE   1
  AUTHORS   Jackson,A.P., Gamble,J.A., Yeomans,T., Moran,G.P., Saunders,D.,
            Harris,D., Aslett,M., Barrell,J.F., Butler,G., Citiulo,F.,
            Coleman,D.C., de Groot,P.W., Goodwin,T.J., Quail,M.A.,
            McQuillan,J., Munro,C.A., Pain,A., Poulter,R.T., Rajandream,M.A.,
            Renauld,H., Spiering,M.J., Tivey,A., Gow,N.A., Barrell,B.,
            Sullivan,D.J. and Berriman,M.
  TITLE     Comparative genomics of the fungal pathogens Candida dubliniensis
            and Candida albicans
  JOURNAL   Genome Res. 19 (12), 2231-2244 (2009)
   PUBMED   19745113
REFERENCE   2  (bases 1 to 5664)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (28-AUG-2017) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 5664)
  AUTHORS   Gamble,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2009) Gamble J.A., Pathogen Sequencing Unit,
            Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus,
            Hinxton, Cambridge, CB10 1SA, UNITED KINGDOM
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_012862).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..5664
                     /organism="Candida dubliniensis CD36"
                     /mol_type="mRNA"
                     /strain="CD36"
                     /type_material="type material of Candida dubliniensis"
                     /db_xref="taxon:573826"
                     /chromosome="3"
     gene            <1..>5664
                     /locus_tag="CD36_84800"
                     /db_xref="GeneID:8047215"
     CDS             1..5664
                     /locus_tag="CD36_84800"
                     /EC_number="1.1.1.100"
                     /EC_number="2.3.1.86"
                     /EC_number="2.3.1.41"
                     /inference="similar to AA sequence:UniProt:P19097"
                     /inference="similar to AA sequence:UniProt:P43098"
                     /note="In S. cerevisiae: catalyzes the synthesis of
                     long-chain saturated fatty acids"
                     /codon_start=1
                     /transl_table=12
                     /product="fatty acid synthase subunit alpha (ec 2.3.1.86)
                     [includes: acyl carrier; 3-oxoacyl-[acyl-carrier-protein]
                     reductase (ec 1.1.1.100) (beta-ketoacyl reductase);
                     3-oxoacyl-[acyl-carrier-protein] synthase (ec 2.3.1.41)
                     (beta-ketoacyl synthase)], putative"
                     /protein_id="XP_002419391.1"
                     /db_xref="GeneID:8047215"
                     /db_xref="GOA:B9WE74"
                     /db_xref="InterPro:IPR001227"
                     /db_xref="InterPro:IPR002582"
                     /db_xref="InterPro:IPR004568"
                     /db_xref="InterPro:IPR008278"
                     /db_xref="InterPro:IPR014030"
                     /db_xref="InterPro:IPR014031"
                     /db_xref="InterPro:IPR016035"
                     /db_xref="InterPro:IPR016038"
                     /db_xref="InterPro:IPR016039"
                     /db_xref="InterPro:IPR016040"
                     /db_xref="InterPro:IPR018201"
                     /db_xref="InterPro:IPR026025"
                     /db_xref="UniProtKB/TrEMBL:B9WE74"
                     /translation="
MKPEIEQELSHTLLTELLAYQFASPVRWIETQDVFLKQHNTERIIEIGPSPTLSGMANRTIKAKYESYDAALSLQRQVLCYSKDAKEIYYKPDPADLAPKETPKKEENATPAPAAAAAAATAAAPTPAAAPTPAPVSAGPVESIPDEPVKASLLIHVLVAQKLKKPLDAVPMTKAIKDLVNGKSTVQNEILGDLGKEFGSTPEKPEDTPLEELAEQFQDSFSGQLGKTSTSLISRLMSSKMPGGFSITTARKYLESRFGLGAGRQDSVLLMALTNEPANRLAAEADAKAFFDGIAQKYASSAGISLSSGSASGAGAANGGGAVVDSAALDALTAENKKLAKQQLEVLARYLQVDLNKGAKSFIKEKEASAVLQKELDLWEAEHGEFYAKGIQPTFSALKSRTYDSYWNWARQDVLSMYFDIIFGKLTSVDRETINQCIQIMNRANPTLIKFMQYHIDHCPEYKGETYKLAKRLGQQLIDNCKQVLSEDPVYKDVSRITGPKTKVSAKGNIEYEETQKDSVRKFEQYVYEMAQGGAMTKVSQPTIQEDLARVYKAISKQASKDSKLELQRVYEDLLKVVESSKEIETEQLTKDILQAATVPTTPTEEVEDPCTPSSDDEIASLPDKTSIIQPVSSTIPSQTIPFLHIQKKTKDGWEYNKKLSSLYLDGLESAAINGLTFRDKYVLVTGAGAGSIGAEILQGLISGGAKVVVTTSRFSKKVTEYYQNMYARYGAAGSTLIVVPFNQGSKQDVDALVQYIYDEPKKGGLGWDLDAIIPFAAIPENGNGLDNIDSKSEFAHRIMLTNLLRLLGAVKSRKATDTRPAQCILPLSPNHGTFGFDGLYSESKISLETLFNRWYSEDWGSKLTICGAVIGWTRGTGLMSANNIIAEGIEKLGVRTFSQKEMAFNILGLLTPEIVQLCQEEPVMADLNGGLQFIENLKDFTSKLRTDLLETADIRRAVSIESAIEQKVVNGDNVDANYSKVMVEPRANLKFDFPTLKSYDEIKQIAPELEGMLDLENVVVVTGFAEVGPWGNSRTRWEMEAYGEFSLEGAIEMAWIMGFIKYHNGNLKGKPYSGWVDAKTQTPIDEKDIKSKYEEEILEHSGIRLIEPELFNGYDPKKKQMIQEVVVQHDLEPFECSKETAEQYKHEHGEKCEIFEIEESGEYTVRILKGATLYVPKALRFDRLVAGQIPTGWDARTYGIPEDTISQVDPITLYVLVATVEALLSAGITDPYEFYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFADRPVQNDILQESFINTMSAWVNMLLLSSSGPIKTPVGACATAVESVDIGIETILSGKAKVVLVGGYDDFQEEGSYEFANMNATSNSIEEFKHGRTPKEMSRPTTTTRNGFMEAQGSGIQVIMTADLALKMGVPIHAVLAMTATATDKIGRSVPAPGKGILTTAREHHGNLKYPSPLLNIKYRKRQLNKRLEQIKSWEETELSYLQEEAELAKEEFGDEFSMHEFLKERTEEVYRESKRQVSDAKKQWGNSFYKSDPRIAPLRGSLAAFNLTIDDLGVASFHGTSTVANDKNESATINNMMKHLGRSEGNPVFGVFQKYLTGHPKGAAGAWMLNGAIQILETGLVPGNRNADNVDKLLEEYEYVLYPSRSIQTDGIKAVSVTSFGFGQKGAQAVVVHPDYLFAVLDRSTYEEYASKVSARNKKTYRYMHNAITRNTMFVAKDKAPYSDELEQPVYLDPLARVEESKKKLVFSDKTIQSNQSYVGEVAQKTAKALSTLNKSSKGVGVDVELLSAINLDNETFIERNFTGNEIEYCANTAHPQASFTGTWSAKEAVFKALGVESKGAGASLIDIEITRDINGAPKVVLHGEAKKAATKAGVKNVSISISHDDFQATAVALSEF"
     misc_feature    <16..186
                     /locus_tag="CD36_84800"
                     /note="Malonyl CoA-acyl carrier protein transacylase
                     [Lipid transport and metabolism]; Region: FabD; COG0331"
                     /db_xref="CDD:223408"
     misc_feature    277..3510
                     /locus_tag="CD36_84800"
                     /note="3-oxoacyl-ACP reductase domain of yeast-type FAS1
                     [Lipid transport and metabolism]; Region: FabG2; COG4982"
                     /db_xref="CDD:227315"
     misc_feature    3412..4983
                     /locus_tag="CD36_84800"
                     /note="'elongating' condensing enzymes are a subclass of
                     decarboxylating condensing enzymes, including
                     beta-ketoacyl [ACP] synthase, type I and II and polyketide
                     synthases.They are characterized by the utlization of acyl
                     carrier protein (ACP) thioesters as...; Region:
                     elong_cond_enzymes; cd00828"
                     /db_xref="CDD:238424"
     misc_feature    order(3916..3918,4642..4644,4765..4767)
                     /locus_tag="CD36_84800"
                     /note="active site"
                     /db_xref="CDD:238424"
     misc_feature    5296..5655
                     /locus_tag="CD36_84800"
                     /note="phosphopantetheine--protein transferase domain;
                     Region: pantethn_trn; TIGR00556"
                     /db_xref="CDD:273136"
ORIGIN      
atgaaaccagaaattgaacaagagttatcccacactttgttaactgaattattagcatatcaatttgcttctccggttagatggatcgaaactcaggatgtctttttgaaacagcacaacactgaaagaatcattgaaattggaccttcaccaaccttatctggtatggccaatagaactatcaaagccaaatatgaatcttatgatgccgctttatctttgcaacgtcaagttttgtgttactccaaagatgctaaagagatttactacaaaccagatccagcagatcttgctcctaaggaaacaccaaagaaagaggagaatgccacaccagcccccgctgctgctgctgctgctgctactgccgctgccccaaccccagctgctgccccgaccccagcacctgtaagtgctggcccagttgagtctataccagatgaaccagttaaggcttccttattaatccatgttttggttgcacagaaattaaagaaacctttagatgcagttccaatgaccaaggcaattaaggatttggttaatggtaaatccactgttcaaaatgaaattcttggtgatttgggtaaagaatttggttccactcccgagaaaccagaggacactccattggaagaattagctgaacaattccaagattcattcagtggccaattaggaaagacttctacttcattgattagtagattaatgtcctcaaagatgccaggtgggttttccattactacagctagaaaatacttggaatcaagatttggtttgggtgctggtagacaagactctgttttgttgatggctttgacaaatgaaccagccaacagattggccgctgaagctgatgcaaaagctttctttgatggaattgctcaaaagtatgcatcaagtgctggcatttccttgtcttcaggatcagcttctggtgcaggtgctgcaaatggtggtggtgctgttgttgacagtgctgctttagatgcattgacagctgaaaacaagaaattagccaaacagcaattagaagtattagcaagatacttacaggttgacttgaacaaaggagccaaatcttttattaaggaaaaagaagcttctgccgttttgcaaaaggagttagatttgtgggaagctgaacatggagaattttatgctaagggtatccaaccaaccttctcagcattaaagtctagaacctatgattcatattggaattgggctcgacaagacgttttgtcaatgtacttcgacattatttttggaaagttaacttctgtcgatagagaaactattaaccaatgtattcaaattatgaacagagctaatccaactttaatcaagtttatgcaatatcatattgatcattgtccagaatacaaaggtgaaacttataaattggccaagagattgggtcaacaattaattgacaactgtaaacaagttttatctgaagatccagtttacaaagatgtttcgagaatcactggtccaaagactaaagtcagtgctaagggtaacattgagtacgaagaaactcaaaaggactctgttagaaaatttgaacagtacgtgtatgaaatggcccaaggtggtgctatgacaaaagtcagtcaaccaactattcaagaagatttagccagagtttacaaggctatttccaaacaagcttccaaagacagtaaattggagttacaaagagtttatgaggatttattgaaggtggttgaaagttccaaggaaattgaaaccgaacaattgactaaagacattttgcaagctgcaacagttccaacaacaccaacagaagaagtagaagatccttgcactccttcttccgatgatgaaattgcttctttaccagataagacttctatcatccaacctgtctcgtctactattccatctcaaactattccattcttgcacattcagaaaaagaccaaagacggttgggagtacaataagaagttgtcttctctctacttggatggattggaatcagctgccattaatggtttaacctttagagacaagtatgtcttggttactggtgctggtgctggctccattggtgccgaaattttgcaaggtttaatcagtggtggtgccaaagttgttgttacaacctctagattttctaagaaagttaccgagtattatcaaaacatgtatgccagatacggtgcagctggatctaccttaattgttgttcccttcaaccaaggatccaaacaagatgttgatgcattggtccaatacatttatgacgagccaaagaaaggcggtttaggctgggatttggatgcaattattccatttgctgctattccagaaaatggtaatggtctcgacaacattgattctaaatctgaatttgcccacagaatcatgttaacaaaccttttaagattgttgggtgctgtcaaatccagaaaggcaacagatactagaccagctcaatgtattttgccattatctccaaatcacggaacgtttggatttgacgggttgtactccgaatctaaaatctcattggaaactttattcaacagatggtattctgaagactggggatccaagttgaccatttgtggtgccgtcattgggtggactagaggtacaggtttaatgagtgccaacaacattattgctgaaggtattgaaaaattaggtgtcagaactttctcacaaaaagaaatggctttcaatattttaggattattgacaccagagattgtacaattatgtcaagaagaacctgttatggctgacttgaatggtggcttgcagttcatcgaaaacttgaaggatttcacatctaaattgagaacagatttattggaaactgcagacatcagaagagccgtgtctattgaatcagccatcgaacaaaaagttgtcaatggtgataacgtcgatgcaaactattccaaggttatggttgaacctagagccaacttgaaatttgatttcccaactttgaaatcttatgatgaaatcaaacaaattgctccagaattggagggtatgttggacttggagaatgttgttgttgtgacaggttttgctgaagttggtccatggggtaactccagaacaagatgggaaatggaagcctatggtgaattttctttggaaggtgctattgaaatggcttggatcatggggttcattaaatatcacaatggtaatttgaaaggaaaaccatattctggatgggttgatgccaagactcaaactccaatcgacgaaaaagatattaaatccaaatacgaagaagagattttagaacattctggtattagattgattgagccagaattgttcaatggctatgacccaaagaagaaacaaatgattcaagaagttgtggttcaacacgatttagagccatttgaatgttccaaagaaacagccgagcaatacaaacacgaacacggtgaaaaatgtgaaattttcgaaattgaagaaagcggtgaatacacagtcagaatcttgaaaggtgcaactttgtacgttcctaaagctttgagatttgatagattagttgctggtcaaattccaaccggttgggacgctcgtacctatggtattccagaagacactattagtcaagttgacccaattactttgtatgtgttggttgccactgttgaggctttattgtctgctggtatcactgatccatacgaattctacaaatacgttcatgtgtctgaagttggtaattgctctggttctggtatgggaggtgtttctgctttgagaggaatgtttaaagatagatttgctgacagaccagttcaaaatgatattttacaagaatcgtttattaacactatgtctgcttgggtcaatatgttgttgttgtcttcctctggtccaatcaagactccagttggtgcttgtgccactgctgttgaatcggttgacattggtattgaaactattttgtctggtaaggctaaagtggtgttggtaggtggttacgatgacttccaagaagaagggtcctacgaattcgccaacatgaatgctacttctaattctattgaagaattcaaacacggaagaacaccaaaagaaatgtccagaccaaccacgaccaccagaaatggtttcatggaagctcaaggttctggtattcaagttattatgactgctgatttagctcttaaaatgggtgttccaatccatgctgtgttggccatgactgctactgccactgataaaattggtagatctgttccagcaccaggtaagggtatcttgactactgccagagaacatcatggaaacttgaagtacccatctccacttttaaacatcaaatatagaaaaagacaattgaacaaaagattggaacaaatcaaatcctgggaagaaacagaactttcttacttgcaagaagaagccgagttggccaaggaagaatttggtgacgaattttccatgcatgaatttttgaaagaaagaaccgaagaagtgtaccgtgaatcaaagagacaagtttcagacgccaagaaacaatggggtaattcattctacaagtctgatccaagaattgctccattaagagggtctttggctgcctttaacttaaccattgatgatcttggtgttgcatcattccatggtacttctactgttgctaacgataagaatgaatcagctacaatcaacaacatgatgaagcacttgggtagatccgaaggtaacccagtatttggtgtgttccaaaaatacttgacaggtcatccaaaaggtgctgctggtgcttggatgttgaatggtgccattcaaattcttgagacgggtcttgttccaggaaatagaaatgctgataatgttgataaacttttagaggaatacgaatatgtattgtacccatcaagatcaattcaaaccgatggtattaaggctgtttctgttacatcatttggtttcggtcaaaaaggtgcacaagcagttgttgttcatccagattacttgtttgctgttttggatagatccacttatgaagaatacgctagcaaggtttccgctagaaacaaaaagacctaccgttacatgcacaatgcaattaccagaaacaccatgtttgttgccaaagataaggctccatacagtgacgaattggaacaaccagtttatttggatccattggctcgtgttgaagaaagcaagaagaagttggtattcagtgacaaaacaattcaatcgaatcaatcttatgttggtgaagttgctcaaaaaaccgctaaagcgttatcaactttaaacaaatcttcaaaaggagttggagtagatgttgaattgttgtcagcaattaatttggacaacgagacctttattgaaagaaactttactggtaatgaaattgaatactgtgcaaatactgctcatccacaagcctcatttactggaacttggtcagcaaaggaagctgtttttaaagccttaggcgttgaatcaaaaggtgctggagcaagcttgattgatattgaaatcacccgtgacattaatggtgctcctaaagtagttttgcatggtgaggccaaaaaagctgctactaaagctggtgttaaaaacgtaagtatttcaatttctcatgatgatttccaagctactgctgttgctttaagtgaattttag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]