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2024-04-20 14:47:41, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_001599656            1309 bp    mRNA    linear   INV 29-FEB-2020
DEFINITION  PREDICTED: Nasonia vitripennis uroporphyrinogen-III synthase
            (LOC100114801), mRNA.
ACCESSION   XM_001599656
VERSION     XM_001599656.6
DBLINK      BioProject: PRJNA594415
KEYWORDS    RefSeq.
SOURCE      Nasonia vitripennis (jewel wasp)
  ORGANISM  Nasonia vitripennis
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita;
            Proctotrupomorpha; Chalcidoidea; Pteromalidae; Pteromalinae;
            Nasonia.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045760.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Feb 29, 2020 this sequence version replaced XM_001599656.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Nasonia vitripennis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1309
                     /organism="Nasonia vitripennis"
                     /mol_type="mRNA"
                     /strain="AsymCx"
                     /db_xref="taxon:7425"
                     /chromosome="4"
                     /map="unlocalized"
                     /sex="male"
                     /tissue_type="whole animal"
                     /dev_stage="adult"
                     /genotype="PSR+"
     gene            1..1309
                     /gene="LOC100114801"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 ESTs, 221 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 111 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:100114801"
                     /db_xref="NASONIABASE:NV17927"
     CDS             296..1075
                     /gene="LOC100114801"
                     /codon_start=1
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="XP_001599706.1"
                     /db_xref="GeneID:100114801"
                     /db_xref="NASONIABASE:NV17927"
                     /translation="
MSINKIKVLLCTGVSSETDNNENQYKKCLTEHGFECEILQVLHFEFINLDDLRNTLLDSESYNGLILTSPRAAAAIAMTKMQNPFSLEPWLEKTTFCIGQATEFVAKEQVGLTNIFGSDSGNAKNLANFIVHTMKEKCKKPLLLPCSDIARDTIPQILLNNKIEVKKIVVYKTKAHHFLAEALNEALNQSPHVLVFYSPSIVDNMLNALSNNKTIFENFKIIAIGPVTEEALENAGIKVDGVAEKPEPTSLTEVIQKII"
     misc_feature    365..1060
                     /gene="LOC100114801"
                     /note="Uroporphyrinogen-III synthase (HemD) catalyzes the
                     asymmetrical cyclization of tetrapyrrole (linear) to
                     uroporphyrinogen-III, the fourth step in the biosynthesis
                     of heme. This ubiquitous enzyme is present in eukaryotes,
                     bacteria and archaea. Mutations in...; Region: HemD;
                     cd06578"
                     /db_xref="CDD:119440"
     misc_feature    order(500..508,596..598,734..736,806..808,812..814,
                     884..898)
                     /gene="LOC100114801"
                     /note="active site"
                     /db_xref="CDD:119440"
ORIGIN      
gcaaataagtatcgattattaccatacaattcaaatttaaacatttttataggttaaattttgagcaggtgtgttccttcgtttcaactgcagtctgctacagtggattggcagtactgcccaaaacgttatgttctacgtaaaccccttgtaaaccctaacgtatacgctcaattgtggacgcaccctgaataatttagcgaactttctgtacataacctacaatgtttaagcggttggcactagataaatactaatagagctgagtttggattttgcatttacaaatctcaaaatgtctattaataaaataaaagttttattatgtaccggagtttcaagtgagacagataacaatgaaaatcagtataaaaaatgtcttacagaacatggctttgaatgtgaaatattgcaagtgctacattttgaatttattaatctagatgatttacgcaatactttgcttgattcggaatcttataatggtttaatactaacaagtccaagagcagctgcagctatagctatgacaaaaatgcaaaatccattttccttggaaccatggctagaaaaaacaacattttgtattggtcaggctacagaatttgttgcaaaggaacaagttgggttaactaatatatttggttctgattctgggaatgccaagaacttagctaatttcattgtacacactatgaaagaaaaatgtaaaaagccactactacttccatgcagtgatattgcaagagatacaataccacaaattttattaaacaataaaatagaagtaaaaaaaattgttgtatataaaacaaaagctcatcattttttagcagaagcattaaatgaagctttaaaccaatcaccacatgttttagtattctatagtccatcaattgtagataatatgttgaatgccttatctaataataagactatatttgaaaatttcaaaattattgcaattggtcctgttactgaagaagctttagaaaatgcaggaatcaaagttgatggagtagctgaaaaaccagaacctacatccttgactgaagtcatacagaaaatcatttaattgcgaagttaggttttgttcataatgaagacaaattatgaagcactgattacatattaatttttgtttatttatgtaaatattttatacatatcgtaatttttataactttaatgaattttaaaattctctatggtaaattgtacatatttttaagaattatacatgccacataaatcttataaattaaaatgtgtattttattttttgataaaagcatcaattctgaaaata
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]