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2024-04-27 14:11:01, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_001396061            1668 bp    mRNA    linear   PLN 03-MAR-2011
DEFINITION  Aspergillus niger CBS 513.88 homeobox and C2H2 transcription
            factor, mRNA.
ACCESSION   XM_001396061
VERSION     XM_001396061.2
KEYWORDS    RefSeq.
SOURCE      Aspergillus niger CBS 513.88
  ORGANISM  Aspergillus niger CBS 513.88
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae;
            Aspergillus; Aspergillus subgen. Circumdati.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NT_166527).
            
            On Jan 6, 2011 this sequence version replaced XM_001396061.1.
            Derived by automatic computational analysis using gene prediction
            method: Multi-Genome Gnomon.
FEATURES             Location/Qualifiers
     source          1..1668
                     /organism="Aspergillus niger CBS 513.88"
                     /mol_type="mRNA"
                     /db_xref="taxon:425011"
     gene            1..1668
                     /locus_tag="ANI_1_2360104"
                     /db_xref="GeneID:4986405"
     CDS             1..1668
                     /locus_tag="ANI_1_2360104"
                     /codon_start=1
                     /product="homeobox and C2H2 transcription factor"
                     /protein_id="XP_001396098.2"
                     /db_xref="GeneID:4986405"
                     /translation="
MAESSHPPPPPSADDDHWAPWLPSAYPDAVPGLVNAEALSSLSPSYSQNDCGSLDMLSSDNFRTSQPDPTDDTTIIPPPDDYVNVSQWLAGAYRPPVPCTYCQQHRLQCLVIRTTPANPNPVTACSSCVALFRECSLARGEKRHPAGFETVFPVFNHLHGVTEWTEEELFPTPHAFPEKTEEDVQQKPRFSRKGAKILRDWLYRNQHAPYPTDEQKAAFAQQTGLTEKQISTWFANARRRHRMVHRTSRPSQIFRSGSPMPIARSAALTPMERWQRSPPDQEPVSESVIQQAIAAADTDAPWNHPSTSGNASPSSHHFASSISSIDSETSQASSESFSSAWSHQSESYVPFPLSDGRPRSQSRRRRPRRQSAAASPYQCTFCVDGFKKKHDWVRHEKSVHLSLESWICSVGSGVLDLAGLEVLRCDFCDYSPLTESHFSTHEFDVCADRPLSERSFRRKDHLIQHFRKFHHCTTVPALRIEACRVVTNDVQSRCGFCQLVLPTWAARADHLAEHFKNGRRMADWSGDWGLDPLYQAMLRDAVLPADRFVYSDGGS"
     misc_feature    order(565..567,694..696,703..708,715..717)
                     /locus_tag="ANI_1_2360104"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    604..720
                     /locus_tag="ANI_1_2360104"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
ORIGIN      
atggccgaatcctcccatccccctcccccgccatccgccgacgacgaccactgggcgccctggctgccctccgcatacccagatgctgttccaggcttggtaaacgcggaggcgctctcatctctgtctccttcttactcgcagaatgattgcggctcgctggacatgctttcctccgataacttcaggacctcgcagccggatccaactgacgacacgacgatcatccccccgcccgatgactatgtcaatgtctcccagtggctcgctggcgcctatcggcctcctgtcccctgcacctactgtcagcaacaccgactgcagtgccttgtcattcgcaccaccccggccaatccgaaccccgtcaccgcctgttccagttgcgtcgcgctcttccgcgaatgtagcctcgcccgtggcgagaagcgtcaccctgcaggcttcgagaccgtttttcccgtgttcaatcatctacatggcgtaaccgagtggaccgaggaggagctgttccccactccgcacgcatttccagaaaaaacagaagaagacgtacagcagaagccgcggttctctcgaaaaggagccaagatattgcgggattggctgtatcgcaatcaacacgctccgtatcccacagacgaacagaaagctgcgtttgcccagcagaccggcctcactgagaagcagatatctacttggttcgccaatgcccgacggcgccaccgaatggtccaccgcacctcccgaccgagtcagatcttccggagtggctccccaatgcccattgcccggtcggcggccttgactccaatggaacgctggcagcgatccccgccggaccaagagcctgtatccgagtcggttattcagcaagctattgccgctgccgacactgatgctccgtggaatcaccccagcacgtctggcaatgcaagtcccagctctcaccatttcgcgtcctccatttcgagcatcgacagtgaaacgtcgcaggcttcgtctgagagtttctcatccgcctggagtcatcagtccgagagctatgtgccgttcccactgtcagatgggcggccgcgatcccagtcccgtcgcagacggcccagacgccagtcggcagcggcgagcccataccagtgtaccttctgtgtggacggtttcaagaaaaagcatgattgggtccgtcatgaaaagagcgtacacctgtcgttggagtcgtggatatgtagcgtgggatcgggcgttctggatctggccggcttggaggtattacgatgcgatttctgcgattactctccacttactgaatcacatttctcgacccatgagttcgatgtgtgcgcggatcgtccgctatcggaacgttccttccgacgcaaagaccacttgatccagcactttcgcaaatttcatcactgcacgacggtccccgccctacgcattgaggcctgtcgcgttgtcacgaacgatgtgcaaagccggtgtggattttgccaattagtcttgccgacgtgggcagcacgcgcagatcatctggcggagcacttcaagaacggacggcgcatggcggactggtcgggggactgggggctggaccccttgtaccaggccatgttgcgagatgccgtcttgcccgcggatcggtttgtctactccgacggggggtcctga
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]