2024-04-27 14:11:01, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_001396061 1668 bp mRNA linear PLN 03-MAR-2011 DEFINITION Aspergillus niger CBS 513.88 homeobox and C2H2 transcription factor, mRNA. ACCESSION XM_001396061 VERSION XM_001396061.2 KEYWORDS RefSeq. SOURCE Aspergillus niger CBS 513.88 ORGANISM Aspergillus niger CBS 513.88 Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Circumdati. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NT_166527). On Jan 6, 2011 this sequence version replaced XM_001396061.1. Derived by automatic computational analysis using gene prediction method: Multi-Genome Gnomon. FEATURES Location/Qualifiers source 1..1668 /organism="Aspergillus niger CBS 513.88" /mol_type="mRNA" /db_xref="taxon:425011" gene 1..1668 /locus_tag="ANI_1_2360104" /db_xref="GeneID:4986405" CDS 1..1668 /locus_tag="ANI_1_2360104" /codon_start=1 /product="homeobox and C2H2 transcription factor" /protein_id="XP_001396098.2" /db_xref="GeneID:4986405" /translation="
MAESSHPPPPPSADDDHWAPWLPSAYPDAVPGLVNAEALSSLSPSYSQNDCGSLDMLSSDNFRTSQPDPTDDTTIIPPPDDYVNVSQWLAGAYRPPVPCTYCQQHRLQCLVIRTTPANPNPVTACSSCVALFRECSLARGEKRHPAGFETVFPVFNHLHGVTEWTEEELFPTPHAFPEKTEEDVQQKPRFSRKGAKILRDWLYRNQHAPYPTDEQKAAFAQQTGLTEKQISTWFANARRRHRMVHRTSRPSQIFRSGSPMPIARSAALTPMERWQRSPPDQEPVSESVIQQAIAAADTDAPWNHPSTSGNASPSSHHFASSISSIDSETSQASSESFSSAWSHQSESYVPFPLSDGRPRSQSRRRRPRRQSAAASPYQCTFCVDGFKKKHDWVRHEKSVHLSLESWICSVGSGVLDLAGLEVLRCDFCDYSPLTESHFSTHEFDVCADRPLSERSFRRKDHLIQHFRKFHHCTTVPALRIEACRVVTNDVQSRCGFCQLVLPTWAARADHLAEHFKNGRRMADWSGDWGLDPLYQAMLRDAVLPADRFVYSDGGS"
misc_feature order(565..567,694..696,703..708,715..717) /locus_tag="ANI_1_2360104" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 604..720 /locus_tag="ANI_1_2360104" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" ORIGIN
atggccgaatcctcccatccccctcccccgccatccgccgacgacgaccactgggcgccctggctgccctccgcatacccagatgctgttccaggcttggtaaacgcggaggcgctctcatctctgtctccttcttactcgcagaatgattgcggctcgctggacatgctttcctccgataacttcaggacctcgcagccggatccaactgacgacacgacgatcatccccccgcccgatgactatgtcaatgtctcccagtggctcgctggcgcctatcggcctcctgtcccctgcacctactgtcagcaacaccgactgcagtgccttgtcattcgcaccaccccggccaatccgaaccccgtcaccgcctgttccagttgcgtcgcgctcttccgcgaatgtagcctcgcccgtggcgagaagcgtcaccctgcaggcttcgagaccgtttttcccgtgttcaatcatctacatggcgtaaccgagtggaccgaggaggagctgttccccactccgcacgcatttccagaaaaaacagaagaagacgtacagcagaagccgcggttctctcgaaaaggagccaagatattgcgggattggctgtatcgcaatcaacacgctccgtatcccacagacgaacagaaagctgcgtttgcccagcagaccggcctcactgagaagcagatatctacttggttcgccaatgcccgacggcgccaccgaatggtccaccgcacctcccgaccgagtcagatcttccggagtggctccccaatgcccattgcccggtcggcggccttgactccaatggaacgctggcagcgatccccgccggaccaagagcctgtatccgagtcggttattcagcaagctattgccgctgccgacactgatgctccgtggaatcaccccagcacgtctggcaatgcaagtcccagctctcaccatttcgcgtcctccatttcgagcatcgacagtgaaacgtcgcaggcttcgtctgagagtttctcatccgcctggagtcatcagtccgagagctatgtgccgttcccactgtcagatgggcggccgcgatcccagtcccgtcgcagacggcccagacgccagtcggcagcggcgagcccataccagtgtaccttctgtgtggacggtttcaagaaaaagcatgattgggtccgtcatgaaaagagcgtacacctgtcgttggagtcgtggatatgtagcgtgggatcgggcgttctggatctggccggcttggaggtattacgatgcgatttctgcgattactctccacttactgaatcacatttctcgacccatgagttcgatgtgtgcgcggatcgtccgctatcggaacgttccttccgacgcaaagaccacttgatccagcactttcgcaaatttcatcactgcacgacggtccccgccctacgcattgaggcctgtcgcgttgtcacgaacgatgtgcaaagccggtgtggattttgccaattagtcttgccgacgtgggcagcacgcgcagatcatctggcggagcacttcaagaacggacggcgcatggcggactggtcgggggactgggggctggaccccttgtaccaggccatgttgcgagatgccgtcttgcccgcggatcggtttgtctactccgacggggggtcctga
//
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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